Wall clock time and date at job start Tue Mar 31 2020 07:14:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50706 * 119.99763 * 2 1 4 4 C 1.52993 * 109.47077 * 125.00227 * 3 2 1 5 5 C 1.50706 * 109.47077 * 179.97438 * 4 3 2 6 6 O 1.21284 * 119.99897 * 0.02562 * 5 4 3 7 7 N 1.34781 * 120.00057 * 179.97438 * 5 4 3 8 8 C 1.46846 * 120.40987 * 359.72388 * 7 5 4 9 9 C 1.53787 * 109.01375 * 127.71385 * 8 7 5 10 10 C 1.52780 * 108.74691 * 54.06525 * 9 8 7 11 11 H 1.08998 * 108.96469 * 56.80355 * 10 9 8 12 12 O 1.42609 * 111.11246 * 177.33814 * 10 9 8 13 13 C 1.43144 * 113.63303 * 183.60912 * 12 10 9 14 14 C 1.53200 * 109.74294 * 298.31663 * 13 12 10 15 15 N 1.47352 * 108.79814 * 51.20908 * 14 13 12 16 16 C 1.36938 * 121.30047 * 129.78506 * 15 14 13 17 17 H 1.07999 * 119.99604 * 206.92944 * 16 15 14 18 18 C 1.38806 * 120.00245 * 26.94085 * 16 15 14 19 19 N 1.31619 * 120.00661 * 14.42810 * 18 16 15 20 20 Si 1.86806 * 119.99877 * 194.43475 * 18 16 15 21 21 H 1.48493 * 109.47392 * 94.96160 * 20 18 16 22 22 H 1.48503 * 109.47258 * 214.96175 * 20 18 16 23 23 H 1.48506 * 109.46914 * 334.96159 * 20 18 16 24 24 C 1.46875 * 117.39032 * 309.75908 * 15 14 13 25 25 H 1.09002 * 110.20048 * 292.03185 * 24 15 14 26 26 C 1.47126 * 120.40916 * 180.02562 * 7 5 4 27 27 H 1.07999 * 120.00065 * 359.97438 * 1 2 3 28 28 H 1.07999 * 119.99726 * 180.02562 * 1 2 3 29 29 H 1.07999 * 120.00552 * 180.02562 * 2 1 3 30 30 H 1.08999 * 109.46945 * 245.00630 * 3 2 1 31 31 H 1.09001 * 109.46726 * 5.00336 * 3 2 1 32 32 H 1.09000 * 109.47352 * 299.99518 * 4 3 2 33 33 H 1.09001 * 109.47253 * 60.00432 * 4 3 2 34 34 H 1.08996 * 109.50364 * 247.69636 * 8 7 5 35 35 H 1.09000 * 109.50886 * 7.83826 * 8 7 5 36 36 H 1.08994 * 109.72175 * 294.21889 * 9 8 7 37 37 H 1.09005 * 109.51044 * 173.77981 * 9 8 7 38 38 H 1.09002 * 109.42770 * 58.39578 * 13 12 10 39 39 H 1.08998 * 109.42970 * 178.29097 * 13 12 10 40 40 H 1.09004 * 109.57917 * 171.00473 * 14 13 12 41 41 H 1.08999 * 109.58297 * 291.41255 * 14 13 12 42 42 H 0.96996 * 120.00817 * 180.02562 * 19 18 16 43 43 H 1.08997 * 109.73155 * 352.87041 * 26 7 5 44 44 H 1.08993 * 109.73186 * 113.50518 * 26 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 3.0350 1.3332 1.1815 5 6 3.7889 2.6381 1.1812 6 8 3.5703 3.4645 0.3208 7 7 4.7054 2.8872 2.1375 8 6 4.9722 1.8959 3.1876 9 6 6.4846 1.6241 3.2474 10 6 7.2162 2.9544 3.4185 11 1 6.8425 3.4516 4.3136 12 8 8.6229 2.7549 3.5415 13 6 9.3543 3.9607 3.7864 14 6 9.1690 4.9261 2.6113 15 7 7.7283 5.0695 2.3373 16 6 7.1459 6.3033 2.2196 17 1 6.0987 6.4303 2.4515 18 6 7.9012 7.3904 1.8022 19 7 9.0816 7.1995 1.2521 20 14 7.2425 9.1247 2.0215 21 1 7.7664 9.6968 3.2877 22 1 7.6788 9.9680 0.8795 23 1 5.7588 9.0880 2.0713 24 6 6.9417 3.8374 2.1946 25 1 7.2329 3.3078 1.2875 26 6 5.4462 4.1583 2.1461 27 1 -0.5400 0.9353 0.0004 28 1 -0.5400 -0.9353 0.0004 29 1 1.8501 -0.9352 -0.0004 30 1 2.6211 1.4027 -0.9314 31 1 1.3584 2.1316 0.0896 32 1 2.4773 1.2357 2.1130 33 1 3.7400 0.5067 1.0919 34 1 4.6306 2.2822 4.1479 35 1 4.4436 0.9708 2.9577 36 1 6.8090 1.1449 2.3238 37 1 6.7045 0.9747 4.0949 38 1 8.9876 4.4278 4.7005 39 1 10.4128 3.7264 3.8985 40 1 9.5909 5.8981 2.8671 41 1 9.6709 4.5284 1.7292 42 1 9.6096 7.9592 0.9608 43 1 5.2200 4.7221 1.2411 44 1 5.1656 4.7418 3.0229 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001176949878.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:14:25 Heat of formation + Delta-G solvation = -35.237122 kcal Electronic energy + Delta-G solvation = -24811.931962 eV Core-core repulsion = 21344.510616 eV Total energy + Delta-G solvation = -3467.421346 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.16860 -38.63428 -36.17139 -35.41652 -34.70736 -32.00234 -31.39073 -30.75642 -29.70345 -27.15890 -25.56534 -23.97281 -23.86784 -21.97070 -21.25348 -19.97070 -19.69375 -18.71809 -17.06526 -16.82004 -15.91884 -15.68698 -15.35532 -15.20944 -14.97820 -14.54581 -14.13873 -13.90689 -13.69299 -13.48617 -13.07175 -12.86356 -12.81105 -12.58105 -12.35518 -12.14984 -11.83063 -11.37321 -11.18357 -11.16704 -11.00120 -10.95273 -10.82138 -10.60746 -10.26520 -10.20131 -9.99373 -9.67740 -9.60703 -9.42001 -8.99427 -8.54933 -8.34619 -6.74769 -5.84086 -3.30053 2.07617 2.83128 3.18174 3.35247 3.42797 3.44328 4.22740 4.42383 4.50896 4.78228 4.84747 4.99546 5.06590 5.13878 5.21715 5.27641 5.35289 5.39337 5.44143 5.56366 5.66707 5.69486 5.73495 5.83874 5.90320 5.93776 6.05978 6.09535 6.14174 6.24562 6.32670 6.43801 6.46018 6.58957 6.64980 6.71363 6.87078 7.13234 7.50853 7.62686 7.70952 7.88339 8.31663 8.39999 9.09613 9.72652 10.29940 11.23815 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.016830 B = 0.004539 C = 0.003742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1663.340101 B = 6167.078193 C = 7479.847271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.151 4.151 3 C -0.081 4.081 4 C -0.134 4.134 5 C 0.510 3.490 6 O -0.539 6.539 7 N -0.613 5.613 8 C 0.112 3.888 9 C -0.125 4.125 10 C 0.077 3.923 11 H 0.052 0.948 12 O -0.390 6.390 13 C 0.039 3.961 14 C 0.142 3.858 15 N -0.588 5.588 16 C -0.257 4.257 17 H 0.073 0.927 18 C 0.006 3.994 19 N -0.903 5.903 20 Si 0.905 3.095 21 H -0.287 1.287 22 H -0.290 1.290 23 H -0.277 1.277 24 C 0.138 3.862 25 H 0.036 0.964 26 C 0.123 3.877 27 H 0.096 0.904 28 H 0.095 0.905 29 H 0.108 0.892 30 H 0.081 0.919 31 H 0.074 0.926 32 H 0.092 0.908 33 H 0.093 0.907 34 H 0.070 0.930 35 H 0.087 0.913 36 H 0.073 0.927 37 H 0.078 0.922 38 H 0.040 0.960 39 H 0.081 0.919 40 H 0.097 0.903 41 H 0.027 0.973 42 H 0.255 0.745 43 H 0.101 0.899 44 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.794 -14.583 4.512 18.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.169 4.169 3 C -0.119 4.119 4 C -0.174 4.174 5 C 0.298 3.702 6 O -0.416 6.416 7 N -0.347 5.347 8 C -0.012 4.012 9 C -0.164 4.164 10 C 0.017 3.983 11 H 0.070 0.930 12 O -0.309 6.309 13 C -0.039 4.039 14 C 0.016 3.984 15 N -0.313 5.313 16 C -0.386 4.386 17 H 0.090 0.910 18 C -0.193 4.193 19 N -0.547 5.547 20 Si 0.734 3.266 21 H -0.214 1.214 22 H -0.216 1.216 23 H -0.202 1.202 24 C 0.030 3.970 25 H 0.054 0.946 26 C 0.001 3.999 27 H 0.115 0.885 28 H 0.114 0.886 29 H 0.126 0.874 30 H 0.099 0.901 31 H 0.093 0.907 32 H 0.110 0.890 33 H 0.111 0.889 34 H 0.088 0.912 35 H 0.105 0.895 36 H 0.092 0.908 37 H 0.097 0.903 38 H 0.059 0.941 39 H 0.099 0.901 40 H 0.115 0.885 41 H 0.045 0.955 42 H 0.065 0.935 43 H 0.120 0.880 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -9.719 -14.147 3.956 17.614 hybrid contribution -0.135 1.126 0.168 1.146 sum -9.854 -13.021 4.124 16.842 Atomic orbital electron populations 1.23866 0.96002 1.01793 1.01689 1.23004 0.96070 0.98434 0.99439 1.20528 0.97868 0.95223 0.98268 1.21645 0.98851 0.96047 1.00864 1.20662 0.79795 0.88884 0.80864 1.90716 1.65650 1.48299 1.36919 1.48317 1.39609 1.19069 1.27722 1.21788 0.95738 0.92286 0.91363 1.21931 0.93712 0.97477 1.03234 1.22415 0.82251 0.95048 0.98581 0.93043 1.87736 1.17955 1.32022 1.93175 1.23339 0.94884 0.86325 0.99322 1.21469 0.84972 0.98636 0.93298 1.44043 1.04283 1.00085 1.82855 1.19175 0.95743 0.84374 1.39337 0.90955 1.25075 0.97499 0.98783 0.97966 1.70004 1.12717 1.29737 1.42201 0.86227 0.78617 0.84395 0.77313 1.21415 1.21617 1.20210 1.21289 0.90963 0.89558 0.95219 0.94640 1.21763 0.90460 0.83450 1.04225 0.88536 0.88632 0.87365 0.90091 0.90707 0.89011 0.88860 0.91196 0.89472 0.90831 0.90300 0.94130 0.90072 0.88455 0.95457 0.93485 0.88027 0.91088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.60 14.32 29.01 0.42 -1.19 16 2 C -0.15 -1.31 9.52 -36.02 -0.34 -1.66 16 3 C -0.08 -0.88 4.95 -27.88 -0.14 -1.02 16 4 C -0.13 -1.40 4.02 -27.88 -0.11 -1.51 16 5 C 0.51 7.94 7.69 -10.98 -0.08 7.85 16 6 O -0.54 -10.77 15.38 5.55 0.09 -10.69 16 7 N -0.61 -9.49 2.97 -172.41 -0.51 -10.01 16 8 C 0.11 1.28 6.34 -3.44 -0.02 1.25 16 9 C -0.12 -1.66 5.84 -26.43 -0.15 -1.82 16 10 C 0.08 1.38 2.47 -26.64 -0.07 1.31 16 11 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 12 O -0.39 -7.64 10.49 -35.23 -0.37 -8.01 16 13 C 0.04 0.77 6.96 37.26 0.26 1.03 16 14 C 0.14 3.39 5.42 -3.47 -0.02 3.37 16 15 N -0.59 -14.67 3.04 -164.33 -0.50 -15.17 16 16 C -0.26 -6.91 8.89 -15.06 -0.13 -7.04 16 17 H 0.07 1.90 6.26 -52.49 -0.33 1.57 16 18 C 0.01 0.16 5.01 -17.43 -0.09 0.07 16 19 N -0.90 -25.96 11.06 55.49 0.61 -25.35 16 20 Si 0.90 21.66 29.58 -169.99 -5.03 16.63 16 21 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 22 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 23 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 24 C 0.14 2.93 3.03 -67.51 -0.20 2.73 16 25 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 26 C 0.12 2.41 4.48 -3.69 -0.02 2.39 16 27 H 0.10 0.79 7.84 -52.49 -0.41 0.38 16 28 H 0.10 0.64 8.06 -52.49 -0.42 0.22 16 29 H 0.11 0.79 8.06 -52.49 -0.42 0.37 16 30 H 0.08 0.97 8.10 -51.93 -0.42 0.55 16 31 H 0.07 0.89 7.75 -51.93 -0.40 0.48 16 32 H 0.09 0.78 7.94 -51.93 -0.41 0.37 16 33 H 0.09 0.80 7.67 -51.93 -0.40 0.40 16 34 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.09 0.71 5.90 -51.93 -0.31 0.40 16 36 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.08 1.40 8.14 -51.93 -0.42 0.97 16 40 H 0.10 2.53 6.16 -51.93 -0.32 2.21 16 41 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 43 H 0.10 2.33 6.79 -51.93 -0.35 1.98 16 44 H 0.07 1.40 7.38 -51.93 -0.38 1.01 16 LS Contribution 344.15 15.07 5.19 5.19 Total: -1.00 -31.85 344.15 -8.33 -40.18 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: -7.10 Total: 1.44 kcal Atomic # 6 Polarization: 6.49 SS G_CDS: -0.71 Total: 5.78 kcal Atomic # 7 Polarization: -50.13 SS G_CDS: -0.40 Total: -50.52 kcal Atomic # 8 Polarization: -18.41 SS G_CDS: -0.28 Total: -18.69 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.03 Total: 16.63 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -31.85 -8.33 -40.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176949878.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.943 kcal (2) G-P(sol) polarization free energy of solvation -31.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds