Wall clock time and date at job start Tue Mar 31 2020 07:14:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50706 * 119.99763 * 2 1 4 4 C 1.52993 * 109.47077 * 125.00227 * 3 2 1 5 5 C 1.50706 * 109.47077 * 179.97438 * 4 3 2 6 6 O 1.21284 * 119.99897 * 0.02562 * 5 4 3 7 7 N 1.34781 * 120.00057 * 179.97438 * 5 4 3 8 8 C 1.46846 * 120.40987 * 359.72388 * 7 5 4 9 9 C 1.53787 * 109.01375 * 127.71385 * 8 7 5 10 10 C 1.52780 * 108.74691 * 54.06525 * 9 8 7 11 11 H 1.08998 * 108.96469 * 56.80355 * 10 9 8 12 12 O 1.42609 * 111.11246 * 177.33814 * 10 9 8 13 13 C 1.43144 * 113.63303 * 183.60912 * 12 10 9 14 14 C 1.53200 * 109.74294 * 298.31663 * 13 12 10 15 15 N 1.47352 * 108.79814 * 51.20908 * 14 13 12 16 16 C 1.36938 * 121.30047 * 129.78506 * 15 14 13 17 17 H 1.07999 * 119.99604 * 206.92944 * 16 15 14 18 18 C 1.38806 * 120.00245 * 26.94085 * 16 15 14 19 19 N 1.31619 * 120.00661 * 14.42810 * 18 16 15 20 20 Si 1.86806 * 119.99877 * 194.43475 * 18 16 15 21 21 H 1.48493 * 109.47392 * 94.96160 * 20 18 16 22 22 H 1.48503 * 109.47258 * 214.96175 * 20 18 16 23 23 H 1.48506 * 109.46914 * 334.96159 * 20 18 16 24 24 C 1.46875 * 117.39032 * 309.75908 * 15 14 13 25 25 H 1.09002 * 110.20048 * 292.03185 * 24 15 14 26 26 C 1.47126 * 120.40916 * 180.02562 * 7 5 4 27 27 H 1.07999 * 120.00065 * 359.97438 * 1 2 3 28 28 H 1.07999 * 119.99726 * 180.02562 * 1 2 3 29 29 H 1.07999 * 120.00552 * 180.02562 * 2 1 3 30 30 H 1.08999 * 109.46945 * 245.00630 * 3 2 1 31 31 H 1.09001 * 109.46726 * 5.00336 * 3 2 1 32 32 H 1.09000 * 109.47352 * 299.99518 * 4 3 2 33 33 H 1.09001 * 109.47253 * 60.00432 * 4 3 2 34 34 H 1.08996 * 109.50364 * 247.69636 * 8 7 5 35 35 H 1.09000 * 109.50886 * 7.83826 * 8 7 5 36 36 H 1.08994 * 109.72175 * 294.21889 * 9 8 7 37 37 H 1.09005 * 109.51044 * 173.77981 * 9 8 7 38 38 H 1.09002 * 109.42770 * 58.39578 * 13 12 10 39 39 H 1.08998 * 109.42970 * 178.29097 * 13 12 10 40 40 H 1.09004 * 109.57917 * 171.00473 * 14 13 12 41 41 H 1.08999 * 109.58297 * 291.41255 * 14 13 12 42 42 H 0.96996 * 120.00817 * 180.02562 * 19 18 16 43 43 H 1.08997 * 109.73155 * 352.87041 * 26 7 5 44 44 H 1.08993 * 109.73186 * 113.50518 * 26 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 3.0350 1.3332 1.1815 5 6 3.7889 2.6381 1.1812 6 8 3.5703 3.4645 0.3208 7 7 4.7054 2.8872 2.1375 8 6 4.9722 1.8959 3.1876 9 6 6.4846 1.6241 3.2474 10 6 7.2162 2.9544 3.4185 11 1 6.8425 3.4516 4.3136 12 8 8.6229 2.7549 3.5415 13 6 9.3543 3.9607 3.7864 14 6 9.1690 4.9261 2.6113 15 7 7.7283 5.0695 2.3373 16 6 7.1459 6.3033 2.2196 17 1 6.0987 6.4303 2.4515 18 6 7.9012 7.3904 1.8022 19 7 9.0816 7.1995 1.2521 20 14 7.2425 9.1247 2.0215 21 1 7.7664 9.6968 3.2877 22 1 7.6788 9.9680 0.8795 23 1 5.7588 9.0880 2.0713 24 6 6.9417 3.8374 2.1946 25 1 7.2329 3.3078 1.2875 26 6 5.4462 4.1583 2.1461 27 1 -0.5400 0.9353 0.0004 28 1 -0.5400 -0.9353 0.0004 29 1 1.8501 -0.9352 -0.0004 30 1 2.6211 1.4027 -0.9314 31 1 1.3584 2.1316 0.0896 32 1 2.4773 1.2357 2.1130 33 1 3.7400 0.5067 1.0919 34 1 4.6306 2.2822 4.1479 35 1 4.4436 0.9708 2.9577 36 1 6.8090 1.1449 2.3238 37 1 6.7045 0.9747 4.0949 38 1 8.9876 4.4278 4.7005 39 1 10.4128 3.7264 3.8985 40 1 9.5909 5.8981 2.8671 41 1 9.6709 4.5284 1.7292 42 1 9.6096 7.9592 0.9608 43 1 5.2200 4.7221 1.2411 44 1 5.1656 4.7418 3.0229 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001176949878.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:14:25 Heat of formation + Delta-G solvation = -56.415642 kcal Electronic energy + Delta-G solvation = -24812.850332 eV Core-core repulsion = 21344.510616 eV Total energy + Delta-G solvation = -3468.339716 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.51013 -40.11953 -37.49416 -36.57116 -36.24587 -33.59886 -32.99797 -31.88104 -31.06462 -28.94780 -27.01079 -25.48217 -25.06567 -23.49237 -22.71173 -21.42156 -20.63940 -19.92083 -18.71317 -18.28712 -17.18316 -17.08909 -16.85322 -16.68104 -16.27450 -15.97325 -15.60857 -15.41933 -15.05156 -14.77522 -14.60503 -14.50962 -14.01974 -13.76263 -13.46006 -13.33900 -13.04493 -12.94489 -12.83462 -12.69693 -12.40959 -12.30661 -12.08329 -11.96871 -11.90723 -11.85146 -11.73791 -11.26562 -10.83872 -10.76569 -10.54663 -10.18012 -9.68761 -8.77535 -7.93863 -5.43169 1.42262 1.42934 1.43678 1.52773 1.63065 1.96838 2.44461 2.82261 3.20976 3.43472 3.52999 3.83539 3.94527 4.01631 4.07823 4.17300 4.19528 4.22881 4.36642 4.42268 4.48665 4.49815 4.52939 4.56924 4.66217 4.74959 4.83736 4.87309 4.95910 5.00170 5.10770 5.11776 5.12542 5.25119 5.31384 5.44482 5.53143 5.59380 5.79506 5.96081 6.23371 6.32630 6.44266 7.02094 7.18517 7.69659 8.24369 9.12066 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.016830 B = 0.004539 C = 0.003742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1663.340101 B = 6167.078193 C = 7479.847271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.154 4.154 3 C -0.081 4.081 4 C -0.120 4.120 5 C 0.501 3.499 6 O -0.596 6.596 7 N -0.613 5.613 8 C 0.109 3.891 9 C -0.117 4.117 10 C 0.080 3.920 11 H 0.056 0.944 12 O -0.392 6.392 13 C 0.052 3.948 14 C 0.146 3.854 15 N -0.607 5.607 16 C -0.261 4.261 17 H 0.074 0.926 18 C -0.049 4.049 19 N -0.936 5.936 20 Si 0.968 3.032 21 H -0.278 1.278 22 H -0.296 1.296 23 H -0.271 1.271 24 C 0.134 3.866 25 H 0.003 0.997 26 C 0.137 3.863 27 H 0.089 0.911 28 H 0.114 0.886 29 H 0.130 0.870 30 H 0.059 0.941 31 H 0.055 0.945 32 H 0.125 0.875 33 H 0.125 0.875 34 H 0.091 0.909 35 H 0.135 0.865 36 H 0.067 0.933 37 H 0.115 0.885 38 H 0.050 0.950 39 H 0.109 0.891 40 H 0.072 0.928 41 H -0.005 1.005 42 H 0.251 0.749 43 H 0.056 0.944 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.441 -17.514 6.855 22.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.172 4.172 3 C -0.119 4.119 4 C -0.160 4.160 5 C 0.292 3.708 6 O -0.477 6.477 7 N -0.346 5.346 8 C -0.012 4.012 9 C -0.156 4.156 10 C 0.020 3.980 11 H 0.074 0.926 12 O -0.311 6.311 13 C -0.025 4.025 14 C 0.020 3.980 15 N -0.332 5.332 16 C -0.391 4.391 17 H 0.092 0.908 18 C -0.244 4.244 19 N -0.582 5.582 20 Si 0.796 3.204 21 H -0.205 1.205 22 H -0.222 1.222 23 H -0.196 1.196 24 C 0.027 3.973 25 H 0.021 0.979 26 C 0.014 3.986 27 H 0.108 0.892 28 H 0.133 0.867 29 H 0.148 0.852 30 H 0.077 0.923 31 H 0.073 0.927 32 H 0.143 0.857 33 H 0.143 0.857 34 H 0.109 0.891 35 H 0.153 0.847 36 H 0.086 0.914 37 H 0.133 0.867 38 H 0.068 0.932 39 H 0.127 0.873 40 H 0.090 0.910 41 H 0.013 0.987 42 H 0.061 0.939 43 H 0.074 0.926 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -11.382 -17.136 6.341 21.526 hybrid contribution 0.344 2.017 -0.635 2.142 sum -11.037 -15.119 5.706 19.569 Atomic orbital electron populations 1.24041 0.96038 1.02438 1.00623 1.22963 0.96127 0.97818 1.00307 1.20471 0.97648 0.96114 0.97679 1.21705 0.98890 0.93234 1.02135 1.21746 0.79376 0.90131 0.79584 1.90695 1.67339 1.50551 1.39108 1.48423 1.38932 1.18266 1.28986 1.22202 0.94909 0.93127 0.90977 1.21984 0.94136 0.94926 1.04506 1.22530 0.81900 0.97207 0.96331 0.92620 1.87747 1.18880 1.31520 1.92953 1.23171 0.96766 0.85488 0.97119 1.21332 0.84325 0.98443 0.93901 1.44349 1.04978 1.00874 1.82980 1.19470 0.95875 0.85482 1.38257 0.90844 1.25841 0.97955 1.02346 0.98290 1.70163 1.13956 1.30340 1.43737 0.85239 0.78182 0.79911 0.77083 1.20469 1.22240 1.19588 1.21448 0.91473 0.88527 0.95874 0.97933 1.21238 0.90003 0.85605 1.01775 0.89234 0.86736 0.85223 0.92261 0.92652 0.85660 0.85729 0.89071 0.84706 0.91394 0.86690 0.93191 0.87301 0.90974 0.98713 0.93942 0.92572 0.91259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.66 14.32 67.78 0.97 -1.69 16 2 C -0.15 -2.22 9.52 25.65 0.24 -1.98 16 3 C -0.08 -1.65 4.95 29.85 0.15 -1.50 16 4 C -0.12 -2.11 4.02 29.85 0.12 -1.99 16 5 C 0.50 15.19 7.69 87.66 0.67 15.86 16 6 O -0.60 -24.88 15.38 -3.04 -0.05 -24.92 16 7 N -0.61 -18.14 2.97 -817.76 -2.43 -20.57 16 8 C 0.11 1.99 6.34 86.58 0.55 2.54 16 9 C -0.12 -2.66 5.84 30.79 0.18 -2.48 16 10 C 0.08 2.72 2.47 30.65 0.08 2.80 16 11 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 12 O -0.39 -14.68 10.49 -148.98 -1.56 -16.25 16 13 C 0.05 2.01 6.96 72.05 0.50 2.51 16 14 C 0.15 7.24 5.42 86.28 0.47 7.71 16 15 N -0.61 -31.46 3.04 -673.82 -2.05 -33.51 16 16 C -0.26 -14.57 8.89 84.03 0.75 -13.82 16 17 H 0.07 4.00 6.26 -2.91 -0.02 3.98 16 18 C -0.05 -2.78 5.01 84.86 0.43 -2.35 16 19 N -0.94 -56.34 11.06 21.65 0.24 -56.10 16 20 Si 0.97 45.87 29.58 68.60 2.03 47.90 16 21 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 22 H -0.30 -14.20 7.11 99.48 0.71 -13.49 16 23 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 24 C 0.13 5.85 3.03 45.06 0.14 5.99 16 25 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 26 C 0.14 5.55 4.48 86.27 0.39 5.93 16 27 H 0.09 1.33 7.84 -2.91 -0.02 1.31 16 28 H 0.11 1.14 8.06 -2.91 -0.02 1.12 16 29 H 0.13 1.34 8.06 -2.91 -0.02 1.32 16 30 H 0.06 1.44 8.10 -2.39 -0.02 1.42 16 31 H 0.05 1.31 7.75 -2.39 -0.02 1.29 16 32 H 0.13 1.45 7.94 -2.39 -0.02 1.43 16 33 H 0.12 1.49 7.67 -2.39 -0.02 1.47 16 34 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.14 1.28 5.90 -2.39 -0.01 1.26 16 36 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 37 H 0.11 1.91 8.14 -2.38 -0.02 1.89 16 38 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 39 H 0.11 3.57 8.14 -2.39 -0.02 3.55 16 40 H 0.07 3.93 6.16 -2.38 -0.01 3.92 16 41 H -0.01 -0.29 8.14 -2.39 -0.02 -0.31 16 42 H 0.25 14.62 8.31 -92.71 -0.77 13.85 16 43 H 0.06 2.76 6.79 -2.39 -0.02 2.74 16 44 H 0.07 2.78 7.38 -2.39 -0.02 2.76 16 Total: -1.00 -76.06 344.15 2.77 -73.29 By element: Atomic # 1 Polarization: 11.67 SS G_CDS: 0.97 Total: 12.63 kcal Atomic # 6 Polarization: 11.91 SS G_CDS: 5.63 Total: 17.53 kcal Atomic # 7 Polarization: -105.94 SS G_CDS: -4.24 Total: -110.19 kcal Atomic # 8 Polarization: -39.56 SS G_CDS: -1.61 Total: -41.17 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 2.03 Total: 47.90 kcal Total: -76.06 2.77 -73.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176949878.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.874 kcal (2) G-P(sol) polarization free energy of solvation -76.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds