Wall clock time and date at job start Tue Mar 31 2020 07:14:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50705 * 119.99299 * 2 1 4 4 C 1.53007 * 109.46931 * 125.00042 * 3 2 1 5 5 C 1.50698 * 109.47201 * 179.97438 * 4 3 2 6 6 O 1.21284 * 119.99662 * 359.97438 * 5 4 3 7 7 N 1.34770 * 120.00185 * 179.97438 * 5 4 3 8 8 C 1.46836 * 120.75456 * 0.02562 * 7 5 4 9 9 C 1.53158 * 108.52329 * 125.39824 * 8 7 5 10 10 C 1.52503 * 109.74678 * 54.54165 * 9 8 7 11 11 H 1.08994 * 108.93340 * 181.04487 * 10 9 8 12 12 O 1.42687 * 110.62688 * 61.34223 * 10 9 8 13 13 C 1.43079 * 113.87028 * 174.64002 * 12 10 9 14 14 C 1.53234 * 109.44557 * 61.64622 * 13 12 10 15 15 N 1.47169 * 108.70184 * 308.42000 * 14 13 12 16 16 C 1.36926 * 121.22710 * 230.95824 * 15 14 13 17 17 H 1.08001 * 120.00493 * 153.55474 * 16 15 14 18 18 C 1.38816 * 120.00093 * 333.55120 * 16 15 14 19 19 N 1.31617 * 119.99720 * 343.45260 * 18 16 15 20 20 Si 1.86797 * 120.00318 * 163.44777 * 18 16 15 21 21 H 1.48505 * 109.46961 * 90.00146 * 20 18 16 22 22 H 1.48496 * 109.47352 * 210.00360 * 20 18 16 23 23 H 1.48505 * 109.47088 * 330.00855 * 20 18 16 24 24 C 1.47598 * 117.55136 * 50.93684 * 15 14 13 25 25 H 1.08996 * 110.31513 * 187.70855 * 24 15 14 26 26 C 1.46798 * 120.72199 * 179.97438 * 7 5 4 27 27 H 1.07995 * 120.00789 * 0.02562 * 1 2 3 28 28 H 1.08005 * 119.99235 * 179.97438 * 1 2 3 29 29 H 1.08001 * 120.00890 * 179.97438 * 2 1 3 30 30 H 1.08994 * 109.47393 * 4.99728 * 3 2 1 31 31 H 1.08994 * 109.46905 * 244.99525 * 3 2 1 32 32 H 1.08994 * 109.47338 * 59.99652 * 4 3 2 33 33 H 1.09007 * 109.47073 * 299.99662 * 4 3 2 34 34 H 1.09003 * 109.55472 * 5.71364 * 8 7 5 35 35 H 1.09001 * 109.65105 * 245.13421 * 8 7 5 36 36 H 1.09001 * 109.41620 * 294.47461 * 9 8 7 37 37 H 1.08999 * 109.41494 * 174.61111 * 9 8 7 38 38 H 1.08997 * 109.48190 * 181.64039 * 13 12 10 39 39 H 1.09007 * 109.47465 * 301.65371 * 13 12 10 40 40 H 1.08999 * 109.59322 * 68.18651 * 14 13 12 41 41 H 1.09001 * 109.59859 * 188.49603 * 14 13 12 42 42 H 0.97005 * 119.99997 * 179.97438 * 19 18 16 43 43 H 1.09003 * 109.52211 * 114.41883 * 26 7 5 44 44 H 1.08997 * 109.57521 * 354.26145 * 26 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0633 1.3052 0.0000 4 6 3.0349 1.3333 1.1817 5 6 3.7887 2.6382 1.1814 6 8 3.5707 3.4642 0.3205 7 7 4.7051 2.8873 2.1377 8 6 4.9826 1.8988 3.1875 9 6 6.4855 1.6043 3.1934 10 6 7.2653 2.9068 3.3384 11 1 8.3321 2.6840 3.3224 12 8 6.9452 3.5497 4.5714 13 6 7.7278 4.7180 4.8355 14 6 7.4757 5.7592 3.7398 15 7 7.6668 5.1198 2.4282 16 6 8.4782 5.6788 1.4774 17 1 8.9487 5.0531 0.7333 18 6 8.6960 7.0497 1.4697 19 7 7.8944 7.8471 2.1433 20 14 10.1268 7.7627 0.5034 21 1 9.6834 8.0761 -0.8788 22 1 10.6007 9.0049 1.1648 23 1 11.2338 6.7739 0.4559 24 6 6.9520 3.8534 2.1755 25 1 7.2797 3.4155 1.2327 26 6 5.4489 4.1528 2.1522 27 1 -0.5401 0.9352 -0.0004 28 1 -0.5399 -0.9354 -0.0004 29 1 1.8501 -0.9352 0.0004 30 1 1.3584 2.1317 0.0895 31 1 2.6211 1.4027 -0.9313 32 1 3.7399 0.5068 1.0922 33 1 2.4771 1.2358 2.1131 34 1 4.4303 0.9821 2.9805 35 1 4.6839 2.2993 4.1562 36 1 6.7632 1.1179 2.2582 37 1 6.7223 0.9453 4.0287 38 1 7.4461 5.1332 5.8031 39 1 8.7849 4.4522 4.8479 40 1 6.4551 6.1334 3.8191 41 1 8.1778 6.5854 3.8522 42 1 8.0468 8.8051 2.1382 43 1 5.1778 4.7245 3.0398 44 1 5.2063 4.7292 1.2595 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001176949879.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:14:29 Heat of formation + Delta-G solvation = -35.435609 kcal Electronic energy + Delta-G solvation = -24925.574648 eV Core-core repulsion = 21458.144694 eV Total energy + Delta-G solvation = -3467.429953 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.13164 -38.64255 -35.86633 -35.34849 -34.63928 -31.91802 -31.51611 -30.72832 -29.39127 -27.44670 -25.39811 -24.08763 -23.45147 -22.62473 -21.43871 -19.94023 -19.26019 -18.20230 -17.05087 -16.77287 -15.88594 -15.52221 -15.43180 -15.18829 -15.01626 -14.50732 -14.37837 -13.79324 -13.69315 -13.41977 -13.18534 -12.80525 -12.47316 -12.43020 -12.28103 -12.10604 -11.89126 -11.36045 -11.14493 -11.12364 -11.07259 -10.91632 -10.76661 -10.59225 -10.27522 -10.17683 -9.99909 -9.65669 -9.57011 -9.34840 -9.00212 -8.59536 -8.20945 -6.76094 -5.86697 -3.30589 2.10521 2.93451 3.31895 3.35496 3.41247 3.43481 4.31211 4.40980 4.58494 4.82707 4.93384 5.03900 5.13435 5.17729 5.19051 5.29616 5.35007 5.43997 5.51001 5.64897 5.69675 5.77513 5.80157 5.88421 6.01279 6.04487 6.08197 6.10675 6.15515 6.30110 6.35399 6.43121 6.46623 6.62023 6.69696 6.76478 6.97800 7.08246 7.47628 7.70139 7.79943 7.87909 8.29632 8.51824 9.08163 9.69826 10.27343 11.20940 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.019695 B = 0.004231 C = 0.003723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1421.346394 B = 6616.257288 C = 7519.436574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.151 4.151 3 C -0.081 4.081 4 C -0.133 4.133 5 C 0.507 3.493 6 O -0.545 6.545 7 N -0.607 5.607 8 C 0.112 3.888 9 C -0.123 4.123 10 C 0.080 3.920 11 H 0.051 0.949 12 O -0.387 6.387 13 C 0.039 3.961 14 C 0.138 3.862 15 N -0.585 5.585 16 C -0.256 4.256 17 H 0.068 0.932 18 C 0.005 3.995 19 N -0.900 5.900 20 Si 0.906 3.094 21 H -0.286 1.286 22 H -0.289 1.289 23 H -0.279 1.279 24 C 0.134 3.866 25 H 0.074 0.926 26 C 0.105 3.895 27 H 0.096 0.904 28 H 0.095 0.905 29 H 0.108 0.892 30 H 0.074 0.926 31 H 0.080 0.920 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.079 0.921 35 H 0.075 0.925 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.081 0.919 39 H 0.041 0.959 40 H 0.028 0.972 41 H 0.096 0.904 42 H 0.256 0.744 43 H 0.067 0.933 44 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.698 -15.583 3.255 17.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.169 4.169 3 C -0.119 4.119 4 C -0.174 4.174 5 C 0.295 3.705 6 O -0.422 6.422 7 N -0.341 5.341 8 C -0.011 4.011 9 C -0.161 4.161 10 C 0.021 3.979 11 H 0.069 0.931 12 O -0.307 6.307 13 C -0.038 4.038 14 C 0.012 3.988 15 N -0.307 5.307 16 C -0.385 4.385 17 H 0.086 0.914 18 C -0.194 4.194 19 N -0.544 5.544 20 Si 0.735 3.265 21 H -0.212 1.212 22 H -0.215 1.215 23 H -0.204 1.204 24 C 0.025 3.975 25 H 0.092 0.908 26 C -0.018 4.018 27 H 0.115 0.885 28 H 0.113 0.887 29 H 0.126 0.874 30 H 0.092 0.908 31 H 0.098 0.902 32 H 0.110 0.890 33 H 0.109 0.891 34 H 0.097 0.903 35 H 0.093 0.907 36 H 0.095 0.905 37 H 0.096 0.904 38 H 0.099 0.901 39 H 0.059 0.941 40 H 0.046 0.954 41 H 0.114 0.886 42 H 0.066 0.934 43 H 0.086 0.914 44 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -7.905 -14.967 2.928 17.177 hybrid contribution 0.964 0.599 -0.526 1.251 sum -6.941 -14.368 2.401 16.136 Atomic orbital electron populations 1.23863 0.96009 1.01774 1.01754 1.23009 0.96071 0.98444 0.99387 1.20525 0.97891 0.95155 0.98285 1.21633 0.98808 0.96182 1.00730 1.20643 0.79917 0.88828 0.81128 1.90703 1.65872 1.48437 1.37213 1.48285 1.39208 1.19151 1.27436 1.21620 0.95912 0.91782 0.91770 1.21798 0.95150 0.96720 1.02481 1.22215 0.97687 0.91816 0.86224 0.93075 1.87711 1.62631 1.42090 1.38236 1.23332 0.94137 0.86934 0.99437 1.21456 1.00615 0.93946 0.82772 1.44299 1.51375 1.22996 1.12037 1.19154 1.19791 0.89954 1.09594 0.91387 1.25064 0.98788 0.96118 0.99398 1.70019 1.36204 1.03164 1.44984 0.86250 0.82247 0.78430 0.79572 1.21233 1.21477 1.20435 1.21607 0.90457 0.89211 0.96185 0.90808 1.22284 0.92132 0.84060 1.03347 0.88540 0.88656 0.87403 0.90752 0.90157 0.89041 0.89130 0.90317 0.90671 0.90488 0.90435 0.90134 0.94109 0.95359 0.88639 0.93436 0.91444 0.89338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.67 14.32 29.02 0.42 -1.26 16 2 C -0.15 -1.36 9.52 -36.02 -0.34 -1.70 16 3 C -0.08 -0.91 4.95 -27.88 -0.14 -1.05 16 4 C -0.13 -1.48 4.03 -27.88 -0.11 -1.59 16 5 C 0.51 8.26 7.70 -10.99 -0.08 8.17 16 6 O -0.54 -11.29 15.40 5.55 0.09 -11.20 16 7 N -0.61 -9.92 2.96 -172.91 -0.51 -10.43 16 8 C 0.11 1.41 6.17 -3.78 -0.02 1.39 16 9 C -0.12 -1.59 5.83 -26.90 -0.16 -1.74 16 10 C 0.08 1.39 2.72 -26.89 -0.07 1.32 16 11 H 0.05 0.92 8.12 -51.93 -0.42 0.50 16 12 O -0.39 -7.12 9.59 -35.23 -0.34 -7.45 16 13 C 0.04 0.75 6.97 37.28 0.26 1.01 16 14 C 0.14 3.20 4.93 -3.56 -0.02 3.18 16 15 N -0.58 -14.33 2.71 -163.89 -0.44 -14.78 16 16 C -0.26 -6.92 9.69 -15.06 -0.15 -7.06 16 17 H 0.07 1.82 7.88 -52.49 -0.41 1.40 16 18 C 0.01 0.15 4.96 -17.43 -0.09 0.06 16 19 N -0.90 -25.69 11.14 55.49 0.62 -25.07 16 20 Si 0.91 21.52 29.58 -169.99 -5.03 16.49 16 21 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 22 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 23 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 24 C 0.13 2.78 3.02 -67.09 -0.20 2.58 16 25 H 0.07 1.58 7.99 -51.93 -0.42 1.16 16 26 C 0.11 2.17 5.62 -3.74 -0.02 2.15 16 27 H 0.10 0.82 7.84 -52.49 -0.41 0.41 16 28 H 0.10 0.66 8.06 -52.48 -0.42 0.24 16 29 H 0.11 0.81 8.06 -52.49 -0.42 0.39 16 30 H 0.07 0.92 7.75 -51.93 -0.40 0.52 16 31 H 0.08 0.99 8.10 -51.93 -0.42 0.57 16 32 H 0.09 0.82 7.71 -51.93 -0.40 0.42 16 33 H 0.09 0.85 7.93 -51.92 -0.41 0.44 16 34 H 0.08 0.72 5.94 -51.93 -0.31 0.41 16 35 H 0.08 0.99 7.94 -51.93 -0.41 0.57 16 36 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 37 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 39 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.03 0.70 7.17 -51.93 -0.37 0.33 16 41 H 0.10 2.45 6.14 -51.93 -0.32 2.13 16 42 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 43 H 0.07 1.48 6.56 -51.93 -0.34 1.14 16 44 H 0.09 2.13 7.00 -51.93 -0.36 1.77 16 LS Contribution 344.21 15.07 5.19 5.19 Total: -1.00 -31.22 344.21 -8.25 -39.47 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: -7.09 Total: 2.33 kcal Atomic # 6 Polarization: 6.19 SS G_CDS: -0.73 Total: 5.46 kcal Atomic # 7 Polarization: -49.94 SS G_CDS: -0.34 Total: -50.28 kcal Atomic # 8 Polarization: -18.40 SS G_CDS: -0.25 Total: -18.66 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.03 Total: 16.49 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -31.22 -8.25 -39.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176949879.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.031 kcal (2) G-P(sol) polarization free energy of solvation -31.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds