Wall clock time and date at job start Tue Mar 31 2020 07:14:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50705 * 119.99299 * 2 1 4 4 C 1.53007 * 109.46931 * 125.00042 * 3 2 1 5 5 C 1.50698 * 109.47201 * 179.97438 * 4 3 2 6 6 O 1.21284 * 119.99662 * 359.97438 * 5 4 3 7 7 N 1.34770 * 120.00185 * 179.97438 * 5 4 3 8 8 C 1.46836 * 120.75456 * 0.02562 * 7 5 4 9 9 C 1.53158 * 108.52329 * 125.39824 * 8 7 5 10 10 C 1.52503 * 109.74678 * 54.54165 * 9 8 7 11 11 H 1.08994 * 108.93340 * 181.04487 * 10 9 8 12 12 O 1.42687 * 110.62688 * 61.34223 * 10 9 8 13 13 C 1.43079 * 113.87028 * 174.64002 * 12 10 9 14 14 C 1.53234 * 109.44557 * 61.64622 * 13 12 10 15 15 N 1.47169 * 108.70184 * 308.42000 * 14 13 12 16 16 C 1.36926 * 121.22710 * 230.95824 * 15 14 13 17 17 H 1.08001 * 120.00493 * 153.55474 * 16 15 14 18 18 C 1.38816 * 120.00093 * 333.55120 * 16 15 14 19 19 N 1.31617 * 119.99720 * 343.45260 * 18 16 15 20 20 Si 1.86797 * 120.00318 * 163.44777 * 18 16 15 21 21 H 1.48505 * 109.46961 * 90.00146 * 20 18 16 22 22 H 1.48496 * 109.47352 * 210.00360 * 20 18 16 23 23 H 1.48505 * 109.47088 * 330.00855 * 20 18 16 24 24 C 1.47598 * 117.55136 * 50.93684 * 15 14 13 25 25 H 1.08996 * 110.31513 * 187.70855 * 24 15 14 26 26 C 1.46798 * 120.72199 * 179.97438 * 7 5 4 27 27 H 1.07995 * 120.00789 * 0.02562 * 1 2 3 28 28 H 1.08005 * 119.99235 * 179.97438 * 1 2 3 29 29 H 1.08001 * 120.00890 * 179.97438 * 2 1 3 30 30 H 1.08994 * 109.47393 * 4.99728 * 3 2 1 31 31 H 1.08994 * 109.46905 * 244.99525 * 3 2 1 32 32 H 1.08994 * 109.47338 * 59.99652 * 4 3 2 33 33 H 1.09007 * 109.47073 * 299.99662 * 4 3 2 34 34 H 1.09003 * 109.55472 * 5.71364 * 8 7 5 35 35 H 1.09001 * 109.65105 * 245.13421 * 8 7 5 36 36 H 1.09001 * 109.41620 * 294.47461 * 9 8 7 37 37 H 1.08999 * 109.41494 * 174.61111 * 9 8 7 38 38 H 1.08997 * 109.48190 * 181.64039 * 13 12 10 39 39 H 1.09007 * 109.47465 * 301.65371 * 13 12 10 40 40 H 1.08999 * 109.59322 * 68.18651 * 14 13 12 41 41 H 1.09001 * 109.59859 * 188.49603 * 14 13 12 42 42 H 0.97005 * 119.99997 * 179.97438 * 19 18 16 43 43 H 1.09003 * 109.52211 * 114.41883 * 26 7 5 44 44 H 1.08997 * 109.57521 * 354.26145 * 26 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0633 1.3052 0.0000 4 6 3.0349 1.3333 1.1817 5 6 3.7887 2.6382 1.1814 6 8 3.5707 3.4642 0.3205 7 7 4.7051 2.8873 2.1377 8 6 4.9826 1.8988 3.1875 9 6 6.4855 1.6043 3.1934 10 6 7.2653 2.9068 3.3384 11 1 8.3321 2.6840 3.3224 12 8 6.9452 3.5497 4.5714 13 6 7.7278 4.7180 4.8355 14 6 7.4757 5.7592 3.7398 15 7 7.6668 5.1198 2.4282 16 6 8.4782 5.6788 1.4774 17 1 8.9487 5.0531 0.7333 18 6 8.6960 7.0497 1.4697 19 7 7.8944 7.8471 2.1433 20 14 10.1268 7.7627 0.5034 21 1 9.6834 8.0761 -0.8788 22 1 10.6007 9.0049 1.1648 23 1 11.2338 6.7739 0.4559 24 6 6.9520 3.8534 2.1755 25 1 7.2797 3.4155 1.2327 26 6 5.4489 4.1528 2.1522 27 1 -0.5401 0.9352 -0.0004 28 1 -0.5399 -0.9354 -0.0004 29 1 1.8501 -0.9352 0.0004 30 1 1.3584 2.1317 0.0895 31 1 2.6211 1.4027 -0.9313 32 1 3.7399 0.5068 1.0922 33 1 2.4771 1.2358 2.1131 34 1 4.4303 0.9821 2.9805 35 1 4.6839 2.2993 4.1562 36 1 6.7632 1.1179 2.2582 37 1 6.7223 0.9453 4.0287 38 1 7.4461 5.1332 5.8031 39 1 8.7849 4.4522 4.8479 40 1 6.4551 6.1334 3.8191 41 1 8.1778 6.5854 3.8522 42 1 8.0468 8.8051 2.1382 43 1 5.1778 4.7245 3.0398 44 1 5.2063 4.7292 1.2595 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001176949879.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:14:28 Heat of formation + Delta-G solvation = -55.642307 kcal Electronic energy + Delta-G solvation = -24926.450876 eV Core-core repulsion = 21458.144694 eV Total energy + Delta-G solvation = -3468.306182 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.53147 -40.10531 -37.19681 -36.48474 -36.22998 -33.58261 -33.06570 -31.83051 -30.81318 -29.24016 -26.70775 -25.64838 -24.87112 -24.11229 -22.90153 -20.79638 -20.60918 -19.58602 -18.90432 -18.11230 -17.14478 -17.04098 -16.85294 -16.78675 -16.24670 -16.05679 -15.70245 -15.33576 -14.92994 -14.79534 -14.58358 -14.32032 -13.92060 -13.72391 -13.44821 -13.38757 -13.09946 -13.02705 -12.81593 -12.58081 -12.44469 -12.25972 -12.11746 -11.96479 -11.86038 -11.84721 -11.66776 -11.22069 -10.82121 -10.75935 -10.52380 -10.17785 -9.67381 -8.72363 -7.94863 -5.42372 1.42372 1.43205 1.43748 1.53422 1.66547 2.05340 2.45130 2.89640 3.19964 3.44335 3.55966 3.86815 3.98674 4.02932 4.14649 4.19914 4.22100 4.25761 4.35283 4.46047 4.50135 4.53251 4.56593 4.64213 4.71539 4.83241 4.87375 4.92369 4.95832 4.99116 5.06639 5.11557 5.23112 5.26052 5.31468 5.48543 5.56486 5.58568 5.79108 5.96404 6.24410 6.34880 6.53418 7.02108 7.22874 7.69296 8.23651 9.10102 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.019695 B = 0.004231 C = 0.003723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1421.346394 B = 6616.257288 C = 7519.436574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.153 4.153 3 C -0.081 4.081 4 C -0.119 4.119 5 C 0.498 3.502 6 O -0.602 6.602 7 N -0.607 5.607 8 C 0.108 3.892 9 C -0.116 4.116 10 C 0.084 3.916 11 H 0.049 0.951 12 O -0.382 6.382 13 C 0.053 3.947 14 C 0.145 3.855 15 N -0.604 5.604 16 C -0.268 4.268 17 H 0.066 0.934 18 C -0.047 4.047 19 N -0.932 5.932 20 Si 0.971 3.029 21 H -0.289 1.289 22 H -0.288 1.288 23 H -0.267 1.267 24 C 0.131 3.869 25 H 0.062 0.938 26 C 0.124 3.876 27 H 0.088 0.912 28 H 0.115 0.885 29 H 0.132 0.868 30 H 0.051 0.949 31 H 0.061 0.939 32 H 0.128 0.872 33 H 0.119 0.881 34 H 0.129 0.871 35 H 0.074 0.926 36 H 0.093 0.907 37 H 0.113 0.887 38 H 0.108 0.892 39 H 0.046 0.954 40 H -0.001 1.001 41 H 0.067 0.933 42 H 0.252 0.748 43 H 0.046 0.954 44 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.776 -19.542 4.423 21.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.171 4.171 3 C -0.119 4.119 4 C -0.158 4.158 5 C 0.289 3.711 6 O -0.483 6.483 7 N -0.339 5.339 8 C -0.013 4.013 9 C -0.154 4.154 10 C 0.025 3.975 11 H 0.067 0.933 12 O -0.301 6.301 13 C -0.025 4.025 14 C 0.019 3.981 15 N -0.327 5.327 16 C -0.398 4.398 17 H 0.084 0.916 18 C -0.243 4.243 19 N -0.577 5.577 20 Si 0.798 3.202 21 H -0.216 1.216 22 H -0.214 1.214 23 H -0.192 1.192 24 C 0.023 3.977 25 H 0.080 0.920 26 C -0.002 4.002 27 H 0.106 0.894 28 H 0.134 0.866 29 H 0.150 0.850 30 H 0.070 0.930 31 H 0.080 0.920 32 H 0.146 0.854 33 H 0.137 0.863 34 H 0.147 0.853 35 H 0.092 0.908 36 H 0.111 0.889 37 H 0.132 0.868 38 H 0.126 0.874 39 H 0.065 0.935 40 H 0.017 0.983 41 H 0.085 0.915 42 H 0.061 0.939 43 H 0.065 0.935 44 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -7.989 -18.993 4.127 21.014 hybrid contribution 0.906 1.834 -0.940 2.251 sum -7.082 -17.160 3.186 18.835 Atomic orbital electron populations 1.24041 0.96090 1.02399 1.00753 1.22973 0.96103 0.97829 1.00186 1.20469 0.97617 0.96038 0.97747 1.21684 0.98907 0.93395 1.01849 1.21748 0.79372 0.90172 0.79816 1.90683 1.67445 1.50742 1.39455 1.48354 1.38677 1.18218 1.28698 1.21987 0.96500 0.92439 0.90372 1.21866 0.94354 0.94297 1.04881 1.22290 0.98637 0.92679 0.83928 0.93322 1.87729 1.62550 1.41398 1.38413 1.23151 0.94692 0.85978 0.98696 1.21287 0.97989 0.94725 0.84070 1.44544 1.51896 1.24033 1.12222 1.19459 1.20089 0.90353 1.09857 0.91594 1.25830 1.01168 0.96458 1.00824 1.70179 1.37826 1.03011 1.46722 0.85239 0.79512 0.77685 0.77763 1.21562 1.21427 1.19165 1.21766 0.89845 0.88457 0.97620 0.92007 1.21661 0.92892 0.85872 0.99774 0.89403 0.86650 0.85003 0.93010 0.92014 0.85398 0.86261 0.85291 0.90772 0.88865 0.86833 0.87373 0.93521 0.98290 0.91516 0.93902 0.93534 0.94367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.82 14.32 67.78 0.97 -1.85 16 2 C -0.15 -2.29 9.52 25.65 0.24 -2.04 16 3 C -0.08 -1.71 4.95 29.85 0.15 -1.56 16 4 C -0.12 -2.24 4.03 29.85 0.12 -2.12 16 5 C 0.50 15.95 7.70 87.66 0.67 16.63 16 6 O -0.60 -26.20 15.40 -3.04 -0.05 -26.25 16 7 N -0.61 -19.27 2.96 -819.36 -2.42 -21.70 16 8 C 0.11 2.27 6.17 86.37 0.53 2.80 16 9 C -0.12 -2.48 5.83 30.48 0.18 -2.30 16 10 C 0.08 2.76 2.72 30.49 0.08 2.85 16 11 H 0.05 1.65 8.12 -2.39 -0.02 1.63 16 12 O -0.38 -13.29 9.59 -148.98 -1.43 -14.72 16 13 C 0.05 1.96 6.97 72.06 0.50 2.46 16 14 C 0.14 7.02 4.93 86.33 0.43 7.45 16 15 N -0.60 -30.81 2.71 -672.43 -1.82 -32.63 16 16 C -0.27 -15.04 9.69 84.04 0.81 -14.23 16 17 H 0.07 3.64 7.88 -2.91 -0.02 3.62 16 18 C -0.05 -2.66 4.96 84.86 0.42 -2.24 16 19 N -0.93 -55.85 11.14 21.65 0.24 -55.61 16 20 Si 0.97 45.55 29.58 68.60 2.03 47.58 16 21 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 22 H -0.29 -13.39 7.11 99.48 0.71 -12.69 16 23 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 24 C 0.13 5.55 3.02 44.94 0.14 5.69 16 25 H 0.06 2.72 7.99 -2.39 -0.02 2.71 16 26 C 0.12 5.32 5.62 86.42 0.49 5.81 16 27 H 0.09 1.39 7.84 -2.91 -0.02 1.37 16 28 H 0.12 1.21 8.06 -2.91 -0.02 1.19 16 29 H 0.13 1.38 8.06 -2.91 -0.02 1.35 16 30 H 0.05 1.30 7.75 -2.39 -0.02 1.28 16 31 H 0.06 1.52 8.10 -2.39 -0.02 1.50 16 32 H 0.13 1.56 7.71 -2.39 -0.02 1.54 16 33 H 0.12 1.65 7.93 -2.38 -0.02 1.63 16 34 H 0.13 1.49 5.94 -2.39 -0.01 1.48 16 35 H 0.07 1.64 7.94 -2.39 -0.02 1.62 16 36 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 37 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 38 H 0.11 3.43 8.14 -2.39 -0.02 3.41 16 39 H 0.05 1.70 8.14 -2.38 -0.02 1.68 16 40 H 0.00 -0.05 7.17 -2.39 -0.02 -0.07 16 41 H 0.07 3.60 6.14 -2.39 -0.01 3.59 16 42 H 0.25 14.59 8.31 -92.70 -0.77 13.82 16 43 H 0.05 2.17 6.56 -2.39 -0.02 2.15 16 44 H 0.04 2.00 7.00 -2.39 -0.02 1.98 16 Total: -1.00 -75.00 344.21 3.25 -71.75 By element: Atomic # 1 Polarization: 13.25 SS G_CDS: 0.97 Total: 14.22 kcal Atomic # 6 Polarization: 11.61 SS G_CDS: 5.74 Total: 17.35 kcal Atomic # 7 Polarization: -105.93 SS G_CDS: -4.01 Total: -109.94 kcal Atomic # 8 Polarization: -39.49 SS G_CDS: -1.48 Total: -40.97 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 2.03 Total: 47.58 kcal Total: -75.00 3.25 -71.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176949879.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.107 kcal (2) G-P(sol) polarization free energy of solvation -75.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds