Wall clock time and date at job start Tue Mar 31 2020 06:37:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34167 * 127.02619 * 2 1 4 4 O 1.34215 * 109.12756 * 179.97438 * 3 2 1 5 5 C 1.33659 * 110.90432 * 359.72630 * 4 3 2 6 6 C 1.36410 * 108.39655 * 0.44682 * 5 4 3 7 7 C 1.47380 * 127.19187 * 179.83490 * 6 5 4 8 8 O 1.21613 * 120.00134 * 179.68673 * 7 6 5 9 9 N 1.34777 * 119.99615 * 359.68363 * 7 6 5 10 10 C 1.46499 * 119.99665 * 179.72401 * 9 7 6 11 11 C 1.53004 * 109.47198 * 180.27868 * 10 9 7 12 12 C 1.52997 * 109.47000 * 179.97438 * 11 10 9 13 13 C 1.53004 * 109.47000 * 180.02562 * 12 11 10 14 14 C 1.53000 * 109.47510 * 180.02562 * 13 12 11 15 15 C 1.52996 * 109.47271 * 180.02562 * 14 13 12 16 16 N 1.46499 * 109.46959 * 179.97438 * 15 14 13 17 17 C 1.36936 * 119.99757 * 179.97438 * 16 15 14 18 18 H 1.07992 * 120.00471 * 359.97438 * 17 16 15 19 19 C 1.38817 * 119.99709 * 179.97438 * 17 16 15 20 20 N 1.31614 * 120.00319 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99862 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.47118 * 60.00358 * 21 19 17 23 23 H 1.48504 * 109.47036 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.47259 * 300.00259 * 21 19 17 25 25 H 1.09001 * 109.47196 * 270.02446 * 1 2 3 26 26 H 1.09004 * 109.46949 * 30.02361 * 1 2 3 27 27 H 1.08999 * 109.47310 * 150.02593 * 1 2 3 28 28 H 1.08008 * 125.44000 * 359.97438 * 3 2 1 29 29 H 1.07998 * 125.79979 * 180.28875 * 5 4 3 30 30 H 0.97001 * 120.00485 * 0.02562 * 9 7 6 31 31 H 1.09009 * 109.47454 * 300.27637 * 10 9 7 32 32 H 1.08998 * 109.47492 * 60.27932 * 10 9 7 33 33 H 1.08995 * 109.46638 * 300.00121 * 11 10 9 34 34 H 1.09006 * 109.47139 * 60.00254 * 11 10 9 35 35 H 1.08995 * 109.47672 * 299.99669 * 12 11 10 36 36 H 1.09007 * 109.47288 * 60.00489 * 12 11 10 37 37 H 1.09008 * 109.47165 * 300.00083 * 13 12 11 38 38 H 1.08998 * 109.47285 * 60.00156 * 13 12 11 39 39 H 1.09000 * 109.46793 * 300.00282 * 14 13 12 40 40 H 1.08998 * 109.47049 * 59.99608 * 14 13 12 41 41 H 1.08994 * 109.47190 * 299.99512 * 15 14 13 42 42 H 1.08998 * 109.47408 * 59.99824 * 15 14 13 43 43 H 0.97000 * 120.00380 * 0.02562 * 16 15 14 44 44 H 0.96996 * 120.00448 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3149 1.0711 0.0000 4 8 3.5921 0.6587 0.0006 5 6 3.6622 -0.6761 0.0069 6 6 2.3922 -1.1739 0.0006 7 6 1.9912 -2.5921 0.0008 8 8 0.8123 -2.8907 0.0005 9 7 2.9311 -3.5581 0.0013 10 6 2.5325 -4.9678 0.0076 11 6 3.7819 -5.8510 0.0139 12 6 3.3656 -7.3232 0.0211 13 6 4.6149 -8.2065 0.0280 14 6 4.1987 -9.6788 0.0346 15 6 5.4481 -10.5619 0.0421 16 7 5.0495 -11.9716 0.0490 17 6 6.0044 -12.9531 0.0560 18 1 7.0513 -12.6880 0.0559 19 6 5.6267 -14.2888 0.0631 20 7 4.3509 -14.6121 0.0626 21 14 6.9293 -15.6277 0.0718 22 1 7.7751 -15.4876 1.2844 23 1 6.2710 -16.9588 0.0779 24 1 7.7775 -15.5011 -1.1406 25 1 -0.3634 0.0004 1.0277 26 1 -0.3633 0.8898 -0.5142 27 1 -0.3634 -0.8902 -0.5134 28 1 1.9896 2.1010 -0.0004 29 1 4.5701 -1.2610 0.0131 30 1 3.8714 -3.3199 0.0019 31 1 1.9378 -5.1733 0.8978 32 1 1.9406 -5.1820 -0.8822 33 1 4.3765 -5.6455 -0.8762 34 1 4.3738 -5.6369 0.9038 35 1 2.7712 -7.5285 0.9114 36 1 2.7734 -7.5378 -0.8686 37 1 5.2098 -8.0014 -0.8621 38 1 5.2067 -7.9919 0.9178 39 1 3.6037 -9.8841 0.9244 40 1 3.6072 -9.8931 -0.8555 41 1 6.0434 -10.3567 -0.8475 42 1 6.0392 -10.3475 0.9324 43 1 4.1092 -12.2099 0.0480 44 1 4.0869 -15.5454 0.0672 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001179276053.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:15 Heat of formation + Delta-G solvation = -42.297062 kcal Electronic energy + Delta-G solvation = -21695.905630 eV Core-core repulsion = 18228.178142 eV Total energy + Delta-G solvation = -3467.727488 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.01932 -39.73430 -36.84495 -35.43523 -34.23765 -34.00028 -32.13421 -31.05253 -29.76982 -27.63856 -27.00130 -24.58603 -23.40127 -22.24301 -21.27662 -20.92438 -20.63350 -20.24928 -18.42948 -16.97307 -16.69988 -16.33841 -16.20067 -16.10742 -15.20531 -15.19173 -14.63148 -14.21919 -13.85177 -13.76208 -13.46286 -13.43823 -13.36423 -12.93516 -12.92035 -12.70635 -12.35725 -11.92593 -11.73974 -11.36901 -11.19096 -10.91329 -10.72406 -10.72116 -10.46735 -10.26663 -10.25556 -10.00014 -9.96581 -9.62783 -9.40826 -9.14765 -8.83070 -6.87862 -5.72869 -3.01361 0.88777 1.59275 2.45048 2.78916 3.00339 3.46163 3.49963 3.51540 4.03940 4.16525 4.49863 4.56843 4.65354 4.73766 4.82016 4.94526 4.98270 5.22722 5.32376 5.35814 5.38386 5.44897 5.50638 5.56247 5.59911 5.63767 5.69512 5.72993 5.93610 5.95849 6.04405 6.09959 6.13529 6.34138 6.34902 6.42536 6.48278 6.49350 6.92737 6.96782 7.12495 7.72354 7.87871 8.46461 9.56976 10.16770 10.51272 11.50163 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.053411 B = 0.001596 C = 0.001554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 524.109507 B =17541.563337 C =18018.684338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C -0.132 4.132 3 C -0.047 4.047 4 O -0.172 6.172 5 C 0.021 3.979 6 C -0.234 4.234 7 C 0.585 3.415 8 O -0.532 6.532 9 N -0.728 5.728 10 C 0.119 3.881 11 C -0.131 4.131 12 C -0.116 4.116 13 C -0.113 4.113 14 C -0.127 4.127 15 C 0.152 3.848 16 N -0.735 5.735 17 C -0.240 4.240 18 H 0.069 0.931 19 C -0.015 4.015 20 N -0.935 5.935 21 Si 0.908 3.092 22 H -0.286 1.286 23 H -0.291 1.291 24 H -0.286 1.286 25 H 0.070 0.930 26 H 0.065 0.935 27 H 0.082 0.918 28 H 0.208 0.792 29 H 0.211 0.789 30 H 0.397 0.603 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.060 0.940 38 H 0.060 0.940 39 H 0.060 0.940 40 H 0.060 0.940 41 H 0.016 0.984 42 H 0.016 0.984 43 H 0.383 0.617 44 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.493 34.544 -0.158 34.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.134 4.134 3 C -0.113 4.113 4 O -0.067 6.067 5 C -0.049 4.049 6 C -0.239 4.239 7 C 0.372 3.628 8 O -0.409 6.409 9 N -0.379 5.379 10 C -0.004 4.004 11 C -0.169 4.169 12 C -0.154 4.154 13 C -0.151 4.151 14 C -0.165 4.165 15 C 0.025 3.975 16 N -0.379 5.379 17 C -0.372 4.372 18 H 0.087 0.913 19 C -0.211 4.211 20 N -0.583 5.583 21 Si 0.739 3.261 22 H -0.213 1.213 23 H -0.217 1.217 24 H -0.213 1.213 25 H 0.089 0.911 26 H 0.084 0.916 27 H 0.101 0.899 28 H 0.225 0.775 29 H 0.227 0.773 30 H 0.231 0.769 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.079 0.921 40 H 0.079 0.921 41 H 0.034 0.966 42 H 0.034 0.966 43 H 0.217 0.783 44 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -3.973 34.410 -0.162 34.639 hybrid contribution 0.827 -0.910 0.020 1.230 sum -3.146 33.500 -0.142 33.648 Atomic orbital electron populations 1.20253 0.88230 1.03302 1.02687 1.21449 0.97384 0.90328 1.04210 1.23752 0.79591 0.99794 1.08151 1.83791 1.29734 1.22287 1.70843 1.24428 0.98749 0.81255 1.00488 1.21456 0.93444 0.94324 1.14639 1.17269 0.85600 0.83722 0.76208 1.90785 1.17310 1.83291 1.49556 1.45896 1.09322 1.06692 1.76021 1.21476 0.97641 0.78523 1.02805 1.21834 0.96756 0.95535 1.02750 1.21518 0.98692 0.92538 1.02696 1.21500 0.96880 0.94857 1.01881 1.21730 0.99156 0.93574 1.02016 1.20654 0.94116 0.85270 0.97509 1.42387 1.06606 0.99444 1.89476 1.19218 0.88891 0.86450 1.42617 0.91271 1.24752 0.96100 0.97144 1.03131 1.69650 1.13908 1.16935 1.57847 0.86252 0.80616 0.81401 0.77824 1.21285 1.21663 1.21292 0.91107 0.91648 0.89878 0.77534 0.77257 0.76880 0.91164 0.91156 0.91247 0.91259 0.91583 0.91578 0.92107 0.92102 0.92081 0.92076 0.96610 0.96607 0.78329 0.93490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.67 10.00 36.01 0.36 -0.31 16 2 C -0.13 -1.09 6.37 -102.50 -0.65 -1.74 16 3 C -0.05 -0.28 11.96 29.30 0.35 0.07 16 4 O -0.17 -1.13 10.52 7.64 0.08 -1.05 16 5 C 0.02 0.12 11.61 30.07 0.35 0.47 16 6 C -0.23 -2.02 6.31 -103.28 -0.65 -2.67 16 7 C 0.58 6.14 7.81 -12.54 -0.10 6.04 16 8 O -0.53 -7.56 15.41 5.27 0.08 -7.48 16 9 N -0.73 -5.63 5.55 -61.39 -0.34 -5.97 16 10 C 0.12 1.02 5.67 -4.04 -0.02 1.00 16 11 C -0.13 -0.99 5.33 -26.73 -0.14 -1.14 16 12 C -0.12 -1.15 5.21 -26.73 -0.14 -1.29 16 13 C -0.11 -1.36 5.21 -26.73 -0.14 -1.50 16 14 C -0.13 -2.06 5.33 -26.73 -0.14 -2.20 16 15 C 0.15 3.15 6.26 -4.04 -0.03 3.13 16 16 N -0.74 -19.43 5.60 -59.92 -0.34 -19.77 16 17 C -0.24 -6.97 9.99 -15.06 -0.15 -7.12 16 18 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 19 C -0.02 -0.46 5.50 -17.43 -0.10 -0.55 16 20 N -0.93 -28.91 13.06 55.49 0.72 -28.19 16 21 Si 0.91 22.77 29.55 -169.99 -5.02 17.75 16 22 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 23 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 24 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 25 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.08 0.81 6.91 -51.93 -0.36 0.45 16 28 H 0.21 0.50 8.06 -52.48 -0.42 0.08 16 29 H 0.21 0.33 7.47 -52.49 -0.39 -0.07 16 30 H 0.40 1.80 7.44 -40.82 -0.30 1.50 16 31 H 0.07 0.68 8.14 -51.92 -0.42 0.26 16 32 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.06 0.71 8.14 -51.92 -0.42 0.29 16 38 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 42 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 43 H 0.38 10.58 7.67 -40.82 -0.31 10.27 16 44 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 LS Contribution 371.28 15.07 5.60 5.60 Total: -1.00 -35.71 371.28 -7.68 -43.38 By element: Atomic # 1 Polarization: 10.81 SS G_CDS: -7.26 Total: 3.55 kcal Atomic # 6 Polarization: -6.61 SS G_CDS: -1.20 Total: -7.81 kcal Atomic # 7 Polarization: -53.97 SS G_CDS: 0.05 Total: -53.93 kcal Atomic # 8 Polarization: -8.70 SS G_CDS: 0.16 Total: -8.53 kcal Atomic # 14 Polarization: 22.77 SS G_CDS: -5.02 Total: 17.75 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -35.71 -7.68 -43.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001179276053.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.086 kcal (2) G-P(sol) polarization free energy of solvation -35.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds