Wall clock time and date at job start Tue Mar 31 2020 06:37:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34167 * 127.02619 * 2 1 4 4 O 1.34215 * 109.12756 * 179.97438 * 3 2 1 5 5 C 1.33659 * 110.90432 * 359.72630 * 4 3 2 6 6 C 1.36410 * 108.39655 * 0.44682 * 5 4 3 7 7 C 1.47380 * 127.19187 * 179.83490 * 6 5 4 8 8 O 1.21613 * 120.00134 * 179.68673 * 7 6 5 9 9 N 1.34777 * 119.99615 * 359.68363 * 7 6 5 10 10 C 1.46499 * 119.99665 * 179.72401 * 9 7 6 11 11 C 1.53004 * 109.47198 * 180.27868 * 10 9 7 12 12 C 1.52997 * 109.47000 * 179.97438 * 11 10 9 13 13 C 1.53004 * 109.47000 * 180.02562 * 12 11 10 14 14 C 1.53000 * 109.47510 * 180.02562 * 13 12 11 15 15 C 1.52996 * 109.47271 * 180.02562 * 14 13 12 16 16 N 1.46499 * 109.46959 * 179.97438 * 15 14 13 17 17 C 1.36936 * 119.99757 * 179.97438 * 16 15 14 18 18 H 1.07992 * 120.00471 * 359.97438 * 17 16 15 19 19 C 1.38817 * 119.99709 * 179.97438 * 17 16 15 20 20 N 1.31614 * 120.00319 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99862 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.47118 * 60.00358 * 21 19 17 23 23 H 1.48504 * 109.47036 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.47259 * 300.00259 * 21 19 17 25 25 H 1.09001 * 109.47196 * 270.02446 * 1 2 3 26 26 H 1.09004 * 109.46949 * 30.02361 * 1 2 3 27 27 H 1.08999 * 109.47310 * 150.02593 * 1 2 3 28 28 H 1.08008 * 125.44000 * 359.97438 * 3 2 1 29 29 H 1.07998 * 125.79979 * 180.28875 * 5 4 3 30 30 H 0.97001 * 120.00485 * 0.02562 * 9 7 6 31 31 H 1.09009 * 109.47454 * 300.27637 * 10 9 7 32 32 H 1.08998 * 109.47492 * 60.27932 * 10 9 7 33 33 H 1.08995 * 109.46638 * 300.00121 * 11 10 9 34 34 H 1.09006 * 109.47139 * 60.00254 * 11 10 9 35 35 H 1.08995 * 109.47672 * 299.99669 * 12 11 10 36 36 H 1.09007 * 109.47288 * 60.00489 * 12 11 10 37 37 H 1.09008 * 109.47165 * 300.00083 * 13 12 11 38 38 H 1.08998 * 109.47285 * 60.00156 * 13 12 11 39 39 H 1.09000 * 109.46793 * 300.00282 * 14 13 12 40 40 H 1.08998 * 109.47049 * 59.99608 * 14 13 12 41 41 H 1.08994 * 109.47190 * 299.99512 * 15 14 13 42 42 H 1.08998 * 109.47408 * 59.99824 * 15 14 13 43 43 H 0.97000 * 120.00380 * 0.02562 * 16 15 14 44 44 H 0.96996 * 120.00448 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3149 1.0711 0.0000 4 8 3.5921 0.6587 0.0006 5 6 3.6622 -0.6761 0.0069 6 6 2.3922 -1.1739 0.0006 7 6 1.9912 -2.5921 0.0008 8 8 0.8123 -2.8907 0.0005 9 7 2.9311 -3.5581 0.0013 10 6 2.5325 -4.9678 0.0076 11 6 3.7819 -5.8510 0.0139 12 6 3.3656 -7.3232 0.0211 13 6 4.6149 -8.2065 0.0280 14 6 4.1987 -9.6788 0.0346 15 6 5.4481 -10.5619 0.0421 16 7 5.0495 -11.9716 0.0490 17 6 6.0044 -12.9531 0.0560 18 1 7.0513 -12.6880 0.0559 19 6 5.6267 -14.2888 0.0631 20 7 4.3509 -14.6121 0.0626 21 14 6.9293 -15.6277 0.0718 22 1 7.7751 -15.4876 1.2844 23 1 6.2710 -16.9588 0.0779 24 1 7.7775 -15.5011 -1.1406 25 1 -0.3634 0.0004 1.0277 26 1 -0.3633 0.8898 -0.5142 27 1 -0.3634 -0.8902 -0.5134 28 1 1.9896 2.1010 -0.0004 29 1 4.5701 -1.2610 0.0131 30 1 3.8714 -3.3199 0.0019 31 1 1.9378 -5.1733 0.8978 32 1 1.9406 -5.1820 -0.8822 33 1 4.3765 -5.6455 -0.8762 34 1 4.3738 -5.6369 0.9038 35 1 2.7712 -7.5285 0.9114 36 1 2.7734 -7.5378 -0.8686 37 1 5.2098 -8.0014 -0.8621 38 1 5.2067 -7.9919 0.9178 39 1 3.6037 -9.8841 0.9244 40 1 3.6072 -9.8931 -0.8555 41 1 6.0434 -10.3567 -0.8475 42 1 6.0392 -10.3475 0.9324 43 1 4.1092 -12.2099 0.0480 44 1 4.0869 -15.5454 0.0672 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001179276053.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:14 Heat of formation + Delta-G solvation = -66.630790 kcal Electronic energy + Delta-G solvation = -21696.960820 eV Core-core repulsion = 18228.178142 eV Total energy + Delta-G solvation = -3468.782678 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.50884 -40.50161 -37.90883 -36.76234 -35.34781 -34.79250 -33.59145 -32.09531 -30.97507 -28.29332 -28.14352 -25.96705 -24.55958 -23.37619 -22.22548 -21.98705 -21.36932 -20.94510 -19.14251 -18.95105 -17.25066 -17.06327 -16.97163 -16.77366 -16.59750 -16.18505 -15.69443 -15.37231 -15.24788 -15.20095 -14.41567 -14.34815 -14.11166 -13.95531 -13.88395 -13.43414 -13.42400 -13.03494 -12.93180 -12.63063 -12.47728 -12.38676 -12.20946 -12.01041 -11.80774 -11.79279 -11.49427 -11.33759 -11.06026 -10.92481 -10.62589 -10.11493 -9.61380 -9.01585 -7.96193 -5.25960 0.35740 1.06893 1.46643 1.50614 1.56920 2.00565 2.18087 2.29867 2.55914 3.36989 3.60293 3.66025 3.72419 3.97539 4.02125 4.10815 4.25056 4.29628 4.33439 4.36564 4.50024 4.59525 4.64149 4.77306 4.78605 4.84672 4.95117 4.98080 4.98237 5.04473 5.06316 5.07317 5.16040 5.29277 5.33919 5.41224 5.47727 5.49726 5.54230 5.57138 5.99738 6.26210 6.52100 7.18826 7.31588 8.09044 8.31754 9.27377 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.053411 B = 0.001596 C = 0.001554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 524.109507 B =17541.563337 C =18018.684338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.168 4.168 3 C -0.033 4.033 4 O -0.175 6.175 5 C 0.048 3.952 6 C -0.273 4.273 7 C 0.580 3.420 8 O -0.583 6.583 9 N -0.712 5.712 10 C 0.121 3.879 11 C -0.116 4.116 12 C -0.114 4.114 13 C -0.103 4.103 14 C -0.118 4.118 15 C 0.148 3.852 16 N -0.752 5.752 17 C -0.253 4.253 18 H 0.076 0.924 19 C -0.078 4.078 20 N -0.971 5.971 21 Si 0.979 3.021 22 H -0.276 1.276 23 H -0.294 1.294 24 H -0.276 1.276 25 H 0.067 0.933 26 H 0.088 0.912 27 H 0.052 0.948 28 H 0.242 0.758 29 H 0.252 0.748 30 H 0.415 0.585 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.061 0.939 36 H 0.061 0.939 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.053 0.947 40 H 0.053 0.947 41 H 0.019 0.981 42 H 0.019 0.981 43 H 0.372 0.628 44 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.020 36.425 -0.160 36.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.170 4.170 3 C -0.099 4.099 4 O -0.069 6.069 5 C -0.023 4.023 6 C -0.277 4.277 7 C 0.369 3.631 8 O -0.464 6.464 9 N -0.365 5.365 10 C -0.002 4.002 11 C -0.154 4.154 12 C -0.152 4.152 13 C -0.141 4.141 14 C -0.156 4.156 15 C 0.022 3.978 16 N -0.394 5.394 17 C -0.385 4.385 18 H 0.094 0.906 19 C -0.270 4.270 20 N -0.622 5.622 21 Si 0.807 3.193 22 H -0.202 1.202 23 H -0.220 1.220 24 H -0.202 1.202 25 H 0.085 0.915 26 H 0.106 0.894 27 H 0.071 0.929 28 H 0.258 0.742 29 H 0.268 0.732 30 H 0.253 0.747 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.103 0.897 34 H 0.103 0.897 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.088 0.912 38 H 0.089 0.911 39 H 0.072 0.928 40 H 0.072 0.928 41 H 0.037 0.963 42 H 0.037 0.963 43 H 0.204 0.796 44 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -1.431 36.340 -0.164 36.369 hybrid contribution 0.084 -1.428 0.020 1.431 sum -1.347 34.912 -0.144 34.938 Atomic orbital electron populations 1.20174 0.88624 1.02899 1.02350 1.21700 0.97746 0.91293 1.06275 1.24312 0.78914 1.00642 1.06006 1.83836 1.29943 1.22610 1.70513 1.25120 0.98973 0.81028 0.97135 1.21483 0.95127 0.93435 1.17677 1.17648 0.85215 0.84903 0.75371 1.90755 1.19393 1.84119 1.52138 1.45734 1.09985 1.05903 1.74837 1.21361 0.98043 0.79267 1.01543 1.21694 0.96188 0.93322 1.04212 1.21454 0.97613 0.93770 1.02392 1.21414 0.97918 0.91949 1.02808 1.21646 0.96923 0.95650 1.01336 1.20880 0.96236 0.83236 0.97478 1.42666 1.05766 1.01483 1.89499 1.19672 0.89734 0.87425 1.41639 0.90567 1.25654 0.98281 0.99573 1.03495 1.69820 1.15970 1.17035 1.59346 0.85143 0.77991 0.77907 0.78298 1.20208 1.21999 1.20222 0.91478 0.89365 0.92867 0.74225 0.73203 0.74739 0.92562 0.92549 0.89738 0.89747 0.92017 0.92009 0.91152 0.91146 0.92808 0.92798 0.96255 0.96256 0.79610 0.93938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.33 10.00 71.24 0.71 -0.62 16 2 C -0.17 -2.69 6.37 -18.49 -0.12 -2.81 16 3 C -0.03 -0.33 11.96 66.89 0.80 0.47 16 4 O -0.17 -1.80 10.52 4.41 0.05 -1.76 16 5 C 0.05 0.42 11.61 67.39 0.78 1.20 16 6 C -0.27 -4.51 6.31 -18.99 -0.12 -4.63 16 7 C 0.58 12.30 7.81 86.65 0.68 12.98 16 8 O -0.58 -17.68 15.41 -4.07 -0.06 -17.74 16 9 N -0.71 -10.17 5.55 -466.40 -2.59 -12.76 16 10 C 0.12 2.01 5.67 86.38 0.49 2.50 16 11 C -0.12 -1.48 5.33 30.59 0.16 -1.32 16 12 C -0.11 -2.07 5.21 30.59 0.16 -1.91 16 13 C -0.10 -2.26 5.21 30.60 0.16 -2.10 16 14 C -0.12 -3.74 5.33 30.59 0.16 -3.57 16 15 C 0.15 6.04 6.26 86.38 0.54 6.58 16 16 N -0.75 -39.98 5.60 -343.47 -1.92 -41.91 16 17 C -0.25 -14.63 9.99 84.03 0.84 -13.79 16 18 H 0.08 4.19 7.83 -2.91 -0.02 4.17 16 19 C -0.08 -4.59 5.50 84.86 0.47 -4.12 16 20 N -0.97 -60.88 13.06 21.65 0.28 -60.60 16 21 Si 0.98 46.72 29.55 68.60 2.03 48.75 16 22 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 23 H -0.29 -14.06 7.11 99.48 0.71 -13.35 16 24 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 25 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 26 H 0.09 0.89 8.14 -2.38 -0.02 0.87 16 27 H 0.05 1.16 6.91 -2.39 -0.02 1.14 16 28 H 0.24 0.42 8.06 -2.91 -0.02 0.39 16 29 H 0.25 -0.31 7.47 -2.91 -0.02 -0.33 16 30 H 0.42 2.62 7.44 -92.71 -0.69 1.93 16 31 H 0.06 1.10 8.14 -2.38 -0.02 1.08 16 32 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.08 0.88 8.14 -2.38 -0.02 0.86 16 35 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.06 1.19 8.14 -2.38 -0.02 1.17 16 37 H 0.07 1.44 8.14 -2.38 -0.02 1.42 16 38 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 39 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 40 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 41 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 42 H 0.02 0.78 8.14 -2.39 -0.02 0.77 16 43 H 0.37 21.02 7.67 -92.71 -0.71 20.30 16 44 H 0.25 15.26 8.31 -92.71 -0.77 14.48 16 Total: -1.00 -79.39 371.28 3.09 -76.29 By element: Atomic # 1 Polarization: 21.29 SS G_CDS: -0.41 Total: 20.89 kcal Atomic # 6 Polarization: -16.88 SS G_CDS: 5.72 Total: -11.16 kcal Atomic # 7 Polarization: -111.04 SS G_CDS: -4.23 Total: -115.26 kcal Atomic # 8 Polarization: -19.48 SS G_CDS: -0.02 Total: -19.50 kcal Atomic # 14 Polarization: 46.72 SS G_CDS: 2.03 Total: 48.75 kcal Total: -79.39 3.09 -76.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001179276053.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.662 kcal (2) G-P(sol) polarization free energy of solvation -79.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds