Wall clock time and date at job start Tue Mar 31 2020 07:26:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53002 * 109.47112 * 2 1 4 4 C 1.53000 * 109.47031 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.46969 * 179.97438 * 4 3 2 6 6 C 1.36973 * 120.00362 * 264.53438 * 5 4 3 7 7 H 1.07994 * 120.00586 * 146.36862 * 6 5 4 8 8 C 1.38981 * 119.99633 * 326.37511 * 6 5 4 9 9 N 1.31416 * 120.00145 * 337.58689 * 8 6 5 10 10 Si 1.86801 * 119.99871 * 157.59760 * 8 6 5 11 11 H 1.48499 * 109.47303 * 89.99708 * 10 8 6 12 12 H 1.48501 * 109.47085 * 209.99384 * 10 8 6 13 13 H 1.48498 * 109.47229 * 329.99502 * 10 8 6 14 14 C 1.34774 * 119.99648 * 84.53873 * 5 4 3 15 15 O 1.21635 * 120.00203 * 359.97438 * 14 5 4 16 16 C 1.47326 * 119.99760 * 179.72176 * 14 5 4 17 17 C 1.47132 * 128.57002 * 89.67383 * 16 14 5 18 18 C 1.50708 * 127.33187 * 0.02562 * 17 16 14 19 19 N 1.30007 * 105.33292 * 179.83472 * 17 16 14 20 20 O 1.20656 * 112.31875 * 0.46049 * 19 17 16 21 21 C 1.33516 * 113.15870 * 359.68818 * 20 19 17 22 22 C 1.50699 * 126.83565 * 180.02562 * 21 20 19 23 23 C 1.52996 * 109.47304 * 269.97871 * 22 21 20 24 24 C 1.53004 * 109.47462 * 179.97438 * 23 22 21 25 25 H 1.08996 * 109.46987 * 180.02562 * 1 2 3 26 26 H 1.08992 * 109.47083 * 300.00740 * 1 2 3 27 27 H 1.09005 * 109.46445 * 60.00298 * 1 2 3 28 28 H 1.08992 * 109.47083 * 239.99260 * 2 1 3 29 29 H 1.09001 * 109.46921 * 119.99151 * 2 1 3 30 30 H 1.09003 * 109.47280 * 59.99643 * 3 2 1 31 31 H 1.09001 * 109.46534 * 299.99387 * 3 2 1 32 32 H 1.09003 * 109.47015 * 59.99928 * 4 3 2 33 33 H 1.08997 * 109.47050 * 299.99757 * 4 3 2 34 34 H 0.96996 * 119.99686 * 180.02562 * 9 8 6 35 35 H 1.09005 * 109.46976 * 89.99603 * 18 17 16 36 36 H 1.08994 * 109.47146 * 209.99576 * 18 17 16 37 37 H 1.09003 * 109.46820 * 329.99956 * 18 17 16 38 38 H 1.09009 * 109.47052 * 29.97742 * 22 21 20 39 39 H 1.09002 * 109.47514 * 149.97742 * 22 21 20 40 40 H 1.08998 * 109.47363 * 299.99627 * 23 22 21 41 41 H 1.09002 * 109.47373 * 59.99836 * 23 22 21 42 42 H 1.09001 * 109.47193 * 180.02562 * 24 23 22 43 43 H 1.08999 * 109.47104 * 299.99957 * 24 23 22 44 44 H 1.09002 * 109.46852 * 59.99650 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4425 0.0006 5 7 4.0584 2.8237 0.0000 6 6 4.3937 3.4311 -1.1810 7 1 4.2295 4.4908 -1.3090 8 6 4.9453 2.6836 -2.2147 9 7 5.5473 1.5450 -1.9536 10 14 4.8311 3.2975 -3.9753 11 1 6.0155 4.1384 -4.2841 12 1 4.7920 2.1380 -4.9022 13 1 3.5951 4.1041 -4.1391 14 6 4.1778 3.4967 1.1616 15 8 3.8796 2.9575 2.2103 16 6 4.6747 4.8836 1.1616 17 6 3.9069 6.1331 1.0421 18 6 2.4145 6.2778 0.8909 19 7 4.7897 7.0858 1.0990 20 8 5.9135 6.6627 1.2175 21 6 5.9701 5.3297 1.2671 22 6 7.2083 4.4827 1.4109 23 6 7.7611 4.1479 0.0241 24 6 9.0185 3.2886 0.1700 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3632 0.5138 -0.8901 28 1 1.8934 -0.5139 -0.8899 29 1 1.8934 -0.5137 0.8901 30 1 1.6767 1.9564 0.8900 31 1 1.6768 1.9562 -0.8901 32 1 3.9338 0.9285 -0.8891 33 1 3.9330 0.9288 0.8909 34 1 5.9325 1.0235 -2.6750 35 1 1.9546 6.3489 1.8766 36 1 2.1929 7.1799 0.3207 37 1 2.0166 5.4093 0.3661 38 1 7.9598 5.0313 1.9788 39 1 6.9587 3.5602 1.9350 40 1 7.0097 3.5993 -0.5438 41 1 8.0107 5.0704 -0.5000 42 1 9.4126 3.0504 -0.8180 43 1 9.7698 3.8375 0.7378 44 1 8.7693 2.3660 0.6943 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001187936277.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:26:39 Heat of formation + Delta-G solvation = -4.099062 kcal Electronic energy + Delta-G solvation = -25289.009765 eV Core-core repulsion = 21822.938666 eV Total energy + Delta-G solvation = -3466.071099 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -44.13099 -38.60521 -35.43995 -34.99496 -34.05190 -33.77080 -31.62153 -31.06396 -28.64839 -28.16627 -26.55066 -25.03505 -24.09072 -22.13634 -21.31001 -20.50818 -19.61510 -19.05611 -17.57525 -17.02623 -16.15182 -15.66753 -14.88064 -14.69262 -14.57551 -14.48564 -13.88465 -13.65072 -13.09880 -13.03635 -12.87217 -12.67192 -12.52197 -12.28035 -12.26887 -12.02689 -11.90590 -11.50782 -11.31620 -11.12426 -10.99301 -10.80175 -10.70154 -10.55863 -10.51205 -10.41227 -10.29186 -10.07242 -9.80152 -9.25538 -9.17724 -8.80427 -8.45192 -7.64609 -6.49460 -4.13247 2.07687 2.64962 3.03023 3.15467 3.19519 3.53449 3.64639 4.02678 4.57447 4.78139 4.89348 4.97001 5.42090 5.45237 5.48856 5.51387 5.60058 5.62452 5.79302 5.83916 5.89537 5.98586 6.03427 6.09059 6.13553 6.18177 6.21461 6.23668 6.33686 6.36988 6.38499 6.51163 6.53678 6.66292 6.68446 6.70381 6.78993 7.05222 7.06551 7.29001 7.40935 7.76865 8.28877 8.87592 8.95576 9.37357 9.80354 10.50848 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.010976 B = 0.007290 C = 0.005947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2550.377760 B = 3839.973439 C = 4707.512297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.119 4.119 3 C -0.129 4.129 4 C 0.114 3.886 5 N -0.418 5.418 6 C -0.333 4.333 7 H 0.087 0.913 8 C 0.050 3.950 9 N -0.850 5.850 10 Si 0.904 3.096 11 H -0.276 1.276 12 H -0.280 1.280 13 H -0.269 1.269 14 C 0.536 3.464 15 O -0.596 6.596 16 C -0.181 4.181 17 C 0.039 3.961 18 C -0.069 4.069 19 N -0.372 5.372 20 O 0.083 5.917 21 C -0.001 4.001 22 C -0.028 4.028 23 C -0.129 4.129 24 C -0.141 4.141 25 H 0.047 0.953 26 H 0.050 0.950 27 H 0.050 0.950 28 H 0.059 0.941 29 H 0.057 0.943 30 H 0.053 0.947 31 H 0.058 0.942 32 H 0.111 0.889 33 H 0.053 0.947 34 H 0.271 0.729 35 H 0.076 0.924 36 H 0.073 0.927 37 H 0.083 0.917 38 H 0.077 0.923 39 H 0.093 0.907 40 H 0.104 0.896 41 H 0.056 0.944 42 H 0.053 0.947 43 H 0.044 0.956 44 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.585 1.150 0.826 1.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.157 4.157 3 C -0.168 4.168 4 C -0.009 4.009 5 N -0.133 5.133 6 C -0.461 4.461 7 H 0.104 0.896 8 C -0.156 4.156 9 N -0.486 5.486 10 Si 0.730 3.270 11 H -0.201 1.201 12 H -0.205 1.205 13 H -0.193 1.193 14 C 0.324 3.676 15 O -0.482 6.482 16 C -0.188 4.188 17 C -0.123 4.123 18 C -0.127 4.127 19 N -0.080 5.080 20 O 0.021 5.979 21 C -0.064 4.064 22 C -0.066 4.066 23 C -0.167 4.167 24 C -0.199 4.199 25 H 0.066 0.934 26 H 0.069 0.931 27 H 0.070 0.930 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.077 0.923 32 H 0.129 0.871 33 H 0.071 0.929 34 H 0.081 0.919 35 H 0.095 0.905 36 H 0.092 0.908 37 H 0.102 0.898 38 H 0.096 0.904 39 H 0.111 0.889 40 H 0.123 0.877 41 H 0.075 0.925 42 H 0.072 0.928 43 H 0.064 0.936 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.682 2.011 1.151 2.415 hybrid contribution -0.189 -0.398 -1.044 1.133 sum -0.871 1.612 0.107 1.836 Atomic orbital electron populations 1.21757 0.96616 1.00706 1.01485 1.21420 0.95003 0.97633 1.01628 1.21914 0.97766 0.95661 1.01441 1.21518 0.91238 0.84250 1.03911 1.43417 1.53519 1.11833 1.04576 1.19314 1.41658 0.95056 0.90068 0.89575 1.25222 0.94173 0.96217 1.00030 1.69926 1.30958 1.14536 1.33177 0.86295 0.79239 0.78725 0.82764 1.20129 1.20546 1.19328 1.17050 0.82316 0.84156 0.84112 1.90654 1.56044 1.69663 1.31852 1.21972 0.92249 0.95614 1.08930 1.24678 0.98010 0.87834 1.01754 1.20095 0.86400 1.03479 1.02732 1.73454 0.90288 1.23288 1.21003 1.84393 1.24126 1.20907 1.68453 1.24421 0.96980 0.83353 1.01663 1.20141 0.90136 0.96767 0.99584 1.21642 0.98958 1.00532 0.95556 1.21657 0.96969 0.99816 1.01424 0.93406 0.93069 0.93046 0.92228 0.92372 0.92777 0.92286 0.87094 0.92866 0.91872 0.90514 0.90791 0.89823 0.90427 0.88870 0.87742 0.92479 0.92757 0.93644 0.92605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 9.91 37.16 0.37 -1.65 16 2 C -0.12 -1.91 5.93 -26.73 -0.16 -2.07 16 3 C -0.13 -2.51 5.50 -26.73 -0.15 -2.65 16 4 C 0.11 2.56 4.90 -4.04 -0.02 2.54 16 5 N -0.42 -9.91 2.56 -116.06 -0.30 -10.21 16 6 C -0.33 -7.95 7.89 -14.98 -0.12 -8.07 16 7 H 0.09 2.12 7.28 -52.49 -0.38 1.74 16 8 C 0.05 1.17 4.61 -17.45 -0.08 1.09 16 9 N -0.85 -20.24 11.32 55.50 0.63 -19.61 16 10 Si 0.90 18.66 29.61 -169.99 -5.03 13.63 16 11 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 12 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 13 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 14 C 0.54 12.96 7.39 -12.57 -0.09 12.87 16 15 O -0.60 -15.75 16.78 5.25 0.09 -15.67 16 16 C -0.18 -3.99 4.62 -102.89 -0.48 -4.46 16 17 C 0.04 0.79 7.58 -79.75 -0.60 0.18 16 18 C -0.07 -1.15 10.49 36.01 0.38 -0.78 16 19 N -0.37 -7.48 12.01 34.79 0.42 -7.07 16 20 O 0.08 1.62 11.06 18.60 0.21 1.83 16 21 C 0.00 -0.03 6.81 -34.61 -0.24 -0.26 16 22 C -0.03 -0.48 5.66 -27.89 -0.16 -0.64 16 23 C -0.13 -2.25 5.92 -26.73 -0.16 -2.41 16 24 C -0.14 -2.10 9.91 37.16 0.37 -1.73 16 25 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 28 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 31 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 32 H 0.11 2.60 5.33 -51.93 -0.28 2.32 16 33 H 0.05 1.25 7.59 -51.93 -0.39 0.85 16 34 H 0.27 6.16 8.31 -40.82 -0.34 5.82 16 35 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 38 H 0.08 1.10 8.14 -51.92 -0.42 0.67 16 39 H 0.09 1.71 8.11 -51.93 -0.42 1.29 16 40 H 0.10 2.24 6.96 -51.93 -0.36 1.88 16 41 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 43 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 44 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 367.50 15.07 5.54 5.54 Total: -1.00 -27.07 367.50 -6.90 -33.97 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: -7.31 Total: 5.63 kcal Atomic # 6 Polarization: -6.91 SS G_CDS: -1.13 Total: -8.04 kcal Atomic # 7 Polarization: -37.64 SS G_CDS: 0.75 Total: -36.89 kcal Atomic # 8 Polarization: -14.13 SS G_CDS: 0.29 Total: -13.84 kcal Atomic # 14 Polarization: 18.66 SS G_CDS: -5.03 Total: 13.63 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -27.07 -6.90 -33.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001187936277.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.871 kcal (2) G-P(sol) polarization free energy of solvation -27.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds