Wall clock time and date at job start Tue Mar 31 2020 07:26:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53002 * 109.47112 * 2 1 4 4 C 1.53000 * 109.47031 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.46969 * 179.97438 * 4 3 2 6 6 C 1.36973 * 120.00362 * 264.53438 * 5 4 3 7 7 H 1.07994 * 120.00586 * 146.36862 * 6 5 4 8 8 C 1.38981 * 119.99633 * 326.37511 * 6 5 4 9 9 N 1.31416 * 120.00145 * 337.58689 * 8 6 5 10 10 Si 1.86801 * 119.99871 * 157.59760 * 8 6 5 11 11 H 1.48499 * 109.47303 * 89.99708 * 10 8 6 12 12 H 1.48501 * 109.47085 * 209.99384 * 10 8 6 13 13 H 1.48498 * 109.47229 * 329.99502 * 10 8 6 14 14 C 1.34774 * 119.99648 * 84.53873 * 5 4 3 15 15 O 1.21635 * 120.00203 * 359.97438 * 14 5 4 16 16 C 1.47326 * 119.99760 * 179.72176 * 14 5 4 17 17 C 1.47132 * 128.57002 * 89.67383 * 16 14 5 18 18 C 1.50708 * 127.33187 * 0.02562 * 17 16 14 19 19 N 1.30007 * 105.33292 * 179.83472 * 17 16 14 20 20 O 1.20656 * 112.31875 * 0.46049 * 19 17 16 21 21 C 1.33516 * 113.15870 * 359.68818 * 20 19 17 22 22 C 1.50699 * 126.83565 * 180.02562 * 21 20 19 23 23 C 1.52996 * 109.47304 * 269.97871 * 22 21 20 24 24 C 1.53004 * 109.47462 * 179.97438 * 23 22 21 25 25 H 1.08996 * 109.46987 * 180.02562 * 1 2 3 26 26 H 1.08992 * 109.47083 * 300.00740 * 1 2 3 27 27 H 1.09005 * 109.46445 * 60.00298 * 1 2 3 28 28 H 1.08992 * 109.47083 * 239.99260 * 2 1 3 29 29 H 1.09001 * 109.46921 * 119.99151 * 2 1 3 30 30 H 1.09003 * 109.47280 * 59.99643 * 3 2 1 31 31 H 1.09001 * 109.46534 * 299.99387 * 3 2 1 32 32 H 1.09003 * 109.47015 * 59.99928 * 4 3 2 33 33 H 1.08997 * 109.47050 * 299.99757 * 4 3 2 34 34 H 0.96996 * 119.99686 * 180.02562 * 9 8 6 35 35 H 1.09005 * 109.46976 * 89.99603 * 18 17 16 36 36 H 1.08994 * 109.47146 * 209.99576 * 18 17 16 37 37 H 1.09003 * 109.46820 * 329.99956 * 18 17 16 38 38 H 1.09009 * 109.47052 * 29.97742 * 22 21 20 39 39 H 1.09002 * 109.47514 * 149.97742 * 22 21 20 40 40 H 1.08998 * 109.47363 * 299.99627 * 23 22 21 41 41 H 1.09002 * 109.47373 * 59.99836 * 23 22 21 42 42 H 1.09001 * 109.47193 * 180.02562 * 24 23 22 43 43 H 1.08999 * 109.47104 * 299.99957 * 24 23 22 44 44 H 1.09002 * 109.46852 * 59.99650 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4425 0.0006 5 7 4.0584 2.8237 0.0000 6 6 4.3937 3.4311 -1.1810 7 1 4.2295 4.4908 -1.3090 8 6 4.9453 2.6836 -2.2147 9 7 5.5473 1.5450 -1.9536 10 14 4.8311 3.2975 -3.9753 11 1 6.0155 4.1384 -4.2841 12 1 4.7920 2.1380 -4.9022 13 1 3.5951 4.1041 -4.1391 14 6 4.1778 3.4967 1.1616 15 8 3.8796 2.9575 2.2103 16 6 4.6747 4.8836 1.1616 17 6 3.9069 6.1331 1.0421 18 6 2.4145 6.2778 0.8909 19 7 4.7897 7.0858 1.0990 20 8 5.9135 6.6627 1.2175 21 6 5.9701 5.3297 1.2671 22 6 7.2083 4.4827 1.4109 23 6 7.7611 4.1479 0.0241 24 6 9.0185 3.2886 0.1700 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3632 0.5138 -0.8901 28 1 1.8934 -0.5139 -0.8899 29 1 1.8934 -0.5137 0.8901 30 1 1.6767 1.9564 0.8900 31 1 1.6768 1.9562 -0.8901 32 1 3.9338 0.9285 -0.8891 33 1 3.9330 0.9288 0.8909 34 1 5.9325 1.0235 -2.6750 35 1 1.9546 6.3489 1.8766 36 1 2.1929 7.1799 0.3207 37 1 2.0166 5.4093 0.3661 38 1 7.9598 5.0313 1.9788 39 1 6.9587 3.5602 1.9350 40 1 7.0097 3.5993 -0.5438 41 1 8.0107 5.0704 -0.5000 42 1 9.4126 3.0504 -0.8180 43 1 9.7698 3.8375 0.7378 44 1 8.7693 2.3660 0.6943 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001187936277.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:26:38 Heat of formation + Delta-G solvation = -16.291596 kcal Electronic energy + Delta-G solvation = -25289.538473 eV Core-core repulsion = 21822.938666 eV Total energy + Delta-G solvation = -3466.599807 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -45.71559 -40.45949 -37.18790 -36.46103 -35.63464 -35.29889 -33.45214 -32.57591 -30.16750 -29.61014 -27.97278 -26.87615 -25.66749 -23.70861 -22.69218 -21.98315 -21.30293 -20.73889 -19.30215 -18.62557 -17.90966 -17.36010 -16.59915 -16.31468 -16.13291 -16.03178 -15.49594 -15.21767 -14.56950 -14.38397 -14.34365 -14.18963 -13.99639 -13.79312 -13.65377 -13.61051 -13.21356 -13.10779 -13.02097 -12.76283 -12.43758 -12.22761 -12.13722 -12.10503 -12.03550 -11.95724 -11.81673 -11.51360 -11.40470 -10.99550 -10.82323 -10.63603 -10.11851 -9.51837 -8.32595 -6.02129 0.48130 1.03518 1.34776 1.46231 1.54253 1.77432 2.00594 2.29404 2.90928 3.00783 3.30985 3.41060 3.97841 4.07437 4.12120 4.16086 4.19611 4.31793 4.34137 4.42619 4.52374 4.56589 4.60322 4.71210 4.75866 4.82447 4.86359 4.87984 4.90010 4.95940 5.01104 5.07233 5.14863 5.19859 5.25212 5.37228 5.40933 5.44314 5.45028 5.58093 5.60012 5.91797 6.41611 7.08658 7.28582 7.49735 7.93995 8.68315 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.010976 B = 0.007290 C = 0.005947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2550.377760 B = 3839.973439 C = 4707.512297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.115 4.115 3 C -0.117 4.117 4 C 0.115 3.885 5 N -0.419 5.419 6 C -0.343 4.343 7 H 0.077 0.923 8 C 0.027 3.973 9 N -0.867 5.867 10 Si 0.958 3.042 11 H -0.275 1.275 12 H -0.274 1.274 13 H -0.269 1.269 14 C 0.531 3.469 15 O -0.630 6.630 16 C -0.220 4.220 17 C 0.036 3.964 18 C -0.068 4.068 19 N -0.377 5.377 20 O 0.087 5.913 21 C 0.009 3.991 22 C -0.026 4.026 23 C -0.124 4.124 24 C -0.135 4.135 25 H 0.070 0.930 26 H 0.050 0.950 27 H 0.055 0.945 28 H 0.063 0.937 29 H 0.057 0.943 30 H 0.039 0.961 31 H 0.056 0.944 32 H 0.103 0.897 33 H 0.033 0.967 34 H 0.275 0.725 35 H 0.093 0.907 36 H 0.097 0.903 37 H 0.073 0.927 38 H 0.117 0.883 39 H 0.077 0.923 40 H 0.060 0.940 41 H 0.066 0.934 42 H 0.055 0.945 43 H 0.076 0.924 44 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.445 1.694 -0.004 1.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.153 4.153 3 C -0.156 4.156 4 C -0.008 4.008 5 N -0.133 5.133 6 C -0.470 4.470 7 H 0.095 0.905 8 C -0.179 4.179 9 N -0.503 5.503 10 Si 0.782 3.218 11 H -0.201 1.201 12 H -0.199 1.199 13 H -0.193 1.193 14 C 0.319 3.681 15 O -0.519 6.519 16 C -0.227 4.227 17 C -0.126 4.126 18 C -0.126 4.126 19 N -0.085 5.085 20 O 0.027 5.973 21 C -0.054 4.054 22 C -0.064 4.064 23 C -0.161 4.161 24 C -0.192 4.192 25 H 0.089 0.911 26 H 0.069 0.931 27 H 0.074 0.926 28 H 0.082 0.918 29 H 0.076 0.924 30 H 0.058 0.942 31 H 0.074 0.926 32 H 0.120 0.880 33 H 0.052 0.948 34 H 0.085 0.915 35 H 0.112 0.888 36 H 0.116 0.884 37 H 0.092 0.908 38 H 0.135 0.865 39 H 0.096 0.904 40 H 0.079 0.921 41 H 0.084 0.916 42 H 0.074 0.926 43 H 0.095 0.905 44 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -0.537 2.550 0.307 2.624 hybrid contribution -0.173 -0.582 -0.783 0.991 sum -0.709 1.968 -0.476 2.145 Atomic orbital electron populations 1.21713 0.94263 1.02319 1.01741 1.21400 0.97029 0.95042 1.01829 1.21791 0.95375 0.97954 1.00454 1.21522 0.93283 0.83634 1.02334 1.43586 1.52995 1.12098 1.04662 1.19272 1.42593 0.94816 0.90340 0.90531 1.25772 0.93393 0.96225 1.02521 1.69984 1.30903 1.15180 1.34193 0.85472 0.78968 0.78343 0.78993 1.20057 1.19893 1.19329 1.17307 0.82085 0.85049 0.83648 1.90606 1.57733 1.70762 1.32840 1.21969 0.93799 0.95229 1.11662 1.25165 0.99524 0.87005 1.00915 1.20218 0.84234 1.04134 1.03999 1.73426 0.90350 1.23197 1.21573 1.84382 1.24064 1.20529 1.68301 1.24853 0.97280 0.83558 0.99712 1.20258 0.90032 0.96156 0.99929 1.21531 0.98890 1.00754 0.94961 1.21607 0.96353 0.99247 1.01981 0.91120 0.93064 0.92577 0.91804 0.92418 0.94246 0.92561 0.87975 0.94810 0.91476 0.88847 0.88410 0.90806 0.86467 0.90448 0.92079 0.91572 0.92569 0.90528 0.93616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.64 9.91 71.99 0.71 -2.93 16 2 C -0.11 -3.63 5.93 30.60 0.18 -3.45 16 3 C -0.12 -4.62 5.50 30.59 0.17 -4.45 16 4 C 0.12 5.34 4.90 86.38 0.42 5.77 16 5 N -0.42 -20.51 2.56 -639.35 -1.63 -22.15 16 6 C -0.34 -16.64 7.89 84.07 0.66 -15.98 16 7 H 0.08 3.84 7.28 -2.91 -0.02 3.82 16 8 C 0.03 1.23 4.61 84.93 0.39 1.63 16 9 N -0.87 -41.60 11.32 21.67 0.25 -41.36 16 10 Si 0.96 37.80 29.61 68.60 2.03 39.83 16 11 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 12 H -0.27 -10.51 7.11 99.48 0.71 -9.80 16 13 H -0.27 -10.58 7.11 99.48 0.71 -9.87 16 14 C 0.53 26.53 7.39 86.63 0.64 27.17 16 15 O -0.63 -34.66 16.78 -4.14 -0.07 -34.73 16 16 C -0.22 -9.84 4.62 -18.74 -0.09 -9.93 16 17 C 0.04 1.44 7.58 45.17 0.34 1.78 16 18 C -0.07 -2.22 10.49 71.24 0.75 -1.48 16 19 N -0.38 -14.81 12.01 -44.73 -0.54 -15.35 16 20 O 0.09 3.35 11.06 76.79 0.85 4.19 16 21 C 0.01 0.36 6.81 25.49 0.17 0.53 16 22 C -0.03 -0.87 5.66 29.85 0.17 -0.70 16 23 C -0.12 -4.23 5.92 30.59 0.18 -4.05 16 24 C -0.13 -3.79 9.91 71.98 0.71 -3.08 16 25 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 26 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 27 H 0.06 1.37 8.14 -2.38 -0.02 1.35 16 28 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 29 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 30 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 32 H 0.10 4.91 5.33 -2.39 -0.01 4.90 16 33 H 0.03 1.66 7.59 -2.39 -0.02 1.64 16 34 H 0.28 12.47 8.31 -92.71 -0.77 11.70 16 35 H 0.09 2.70 8.14 -2.38 -0.02 2.68 16 36 H 0.10 2.67 8.14 -2.39 -0.02 2.65 16 37 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 38 H 0.12 3.01 8.14 -2.38 -0.02 2.99 16 39 H 0.08 2.88 8.11 -2.39 -0.02 2.86 16 40 H 0.06 2.65 6.96 -2.39 -0.02 2.64 16 41 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 42 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 43 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 44 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 Total: -1.00 -59.09 367.50 7.28 -51.82 By element: Atomic # 1 Polarization: 25.94 SS G_CDS: 0.97 Total: 26.91 kcal Atomic # 6 Polarization: -14.58 SS G_CDS: 5.42 Total: -9.16 kcal Atomic # 7 Polarization: -76.93 SS G_CDS: -1.93 Total: -78.86 kcal Atomic # 8 Polarization: -31.32 SS G_CDS: 0.78 Total: -30.54 kcal Atomic # 14 Polarization: 37.80 SS G_CDS: 2.03 Total: 39.83 kcal Total: -59.09 7.28 -51.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001187936277.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.524 kcal (2) G-P(sol) polarization free energy of solvation -59.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds