Wall clock time and date at job start Tue Mar 31 2020 06:56:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50697 * 120.00391 * 2 1 4 4 C 1.53002 * 109.47215 * 124.99609 * 3 2 1 5 5 C 1.53001 * 109.47127 * 175.24232 * 4 3 2 6 6 C 1.50700 * 115.54751 * 279.48675 * 5 4 3 7 7 O 1.21278 * 120.00222 * 114.72671 * 6 5 4 8 8 N 1.34778 * 119.99982 * 294.72277 * 6 5 4 9 9 C 1.46496 * 120.00174 * 174.98228 * 8 6 5 10 10 H 1.08998 * 110.64251 * 36.69478 * 9 8 6 11 11 C 1.54326 * 110.72163 * 273.54467 * 9 8 6 12 12 N 1.47018 * 107.27433 * 219.44412 * 11 9 8 13 13 C 1.36928 * 125.64993 * 178.97653 * 12 11 9 14 14 H 1.08004 * 120.00243 * 341.90221 * 13 12 11 15 15 C 1.38820 * 120.00433 * 161.90595 * 13 12 11 16 16 N 1.31623 * 119.99323 * 351.91271 * 15 13 12 17 17 Si 1.86798 * 120.00175 * 171.90787 * 15 13 12 18 18 H 1.48499 * 109.46970 * 94.95682 * 17 15 13 19 19 H 1.48503 * 109.47020 * 214.95142 * 17 15 13 20 20 H 1.48498 * 109.47412 * 334.95676 * 17 15 13 21 21 C 1.47427 * 108.70181 * 358.94204 * 12 11 9 22 22 C 1.54911 * 104.83322 * 24.12670 * 21 12 11 23 23 H 1.09001 * 111.00091 * 81.06503 * 22 21 12 24 24 O 1.42903 * 111.00493 * 204.91310 * 22 21 12 25 25 C 1.52995 * 117.50277 * 133.77666 * 5 4 3 26 26 C 1.53000 * 117.50043 * 65.14865 * 5 4 3 27 27 H 1.08005 * 119.99381 * 0.02562 * 1 2 3 28 28 H 1.07994 * 119.99988 * 179.97438 * 1 2 3 29 29 H 1.08000 * 119.99817 * 179.97438 * 2 1 3 30 30 H 1.09005 * 109.47153 * 4.99800 * 3 2 1 31 31 H 1.08999 * 109.47375 * 244.99671 * 3 2 1 32 32 H 1.09005 * 109.47191 * 295.23868 * 4 3 2 33 33 H 1.08993 * 109.47556 * 55.24205 * 4 3 2 34 34 H 0.97007 * 119.99631 * 354.98182 * 8 6 5 35 35 H 1.09005 * 109.87963 * 338.86433 * 11 9 8 36 36 H 1.09004 * 109.88011 * 99.87083 * 11 9 8 37 37 H 0.97002 * 119.99597 * 180.02562 * 16 15 13 38 38 H 1.08999 * 110.36613 * 142.96851 * 21 12 11 39 39 H 1.09002 * 110.36755 * 265.17844 * 21 12 11 40 40 H 0.96701 * 114.00265 * 292.20354 * 24 22 21 41 41 H 1.08999 * 117.49660 * 359.97438 * 25 5 4 42 42 H 1.08995 * 117.50532 * 145.02075 * 25 5 4 43 43 H 1.08999 * 117.49961 * 214.97763 * 26 5 4 44 44 H 1.08999 * 117.49949 * 0.02562 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 3.0351 1.3330 1.1817 5 6 3.8835 2.6044 1.1144 6 6 5.0510 2.5571 0.1627 7 8 5.0717 3.2836 -0.8082 8 7 6.0721 1.7075 0.3905 9 6 7.1531 1.5817 -0.5902 10 1 7.3768 2.5483 -1.0415 11 6 6.7898 0.5442 -1.6733 12 7 8.0107 -0.2172 -1.9754 13 6 8.1072 -1.2478 -2.8719 14 1 7.2157 -1.7568 -3.2076 15 6 9.3508 -1.6386 -3.3491 16 7 10.4185 -0.9222 -3.0674 17 14 9.5089 -3.1809 -4.3910 18 1 9.4657 -2.8134 -5.8291 19 1 10.7994 -3.8514 -4.0900 20 1 8.3876 -4.1041 -4.0821 21 6 9.1140 0.3132 -1.1540 22 6 8.4202 0.9711 0.0648 23 1 8.1524 0.2242 0.8121 24 8 9.2441 1.9903 0.6347 25 6 4.0557 3.4080 2.4049 26 6 3.1636 3.9439 1.2832 27 1 -0.5399 0.9354 -0.0004 28 1 -0.5400 -0.9353 -0.0004 29 1 1.8500 -0.9353 0.0004 30 1 1.3587 2.1316 0.0895 31 1 2.6214 1.4025 -0.9313 32 1 2.4723 1.3208 2.1151 33 1 3.6855 0.4595 1.1381 34 1 6.0912 1.1792 1.2039 35 1 6.0172 -0.1274 -1.2989 36 1 6.4360 1.0529 -2.5701 37 1 11.2874 -1.1950 -3.4012 38 1 9.7669 -0.4963 -0.8275 39 1 9.6822 1.0550 -1.7153 40 1 10.0481 1.6565 1.0557 41 1 3.5641 3.0312 3.3018 42 1 5.0135 3.9026 2.5659 43 1 3.5348 4.7910 0.7063 44 1 2.0856 3.9194 1.4426 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001195897046.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:50 Heat of formation + Delta-G solvation = -22.559778 kcal Electronic energy + Delta-G solvation = -24174.779004 eV Core-core repulsion = 20707.907389 eV Total energy + Delta-G solvation = -3466.871615 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.20262 -38.27569 -36.90196 -35.13235 -35.00830 -33.98637 -31.71491 -30.25906 -28.48756 -27.18312 -25.10745 -24.17749 -22.81809 -22.37627 -20.74174 -20.07945 -19.85454 -19.27553 -17.17040 -17.01970 -16.65047 -15.68613 -15.63619 -15.23721 -14.94021 -14.47386 -14.12147 -13.98500 -13.65346 -13.44777 -13.12217 -12.87120 -12.57739 -12.38234 -12.23701 -12.06311 -11.74666 -11.53139 -11.32708 -11.23241 -11.15286 -10.95483 -10.85735 -10.57355 -10.24915 -10.17388 -9.95019 -9.88259 -9.67031 -9.42072 -9.30719 -8.74537 -8.66824 -6.83212 -5.83191 -3.20812 2.14531 2.73851 3.24772 3.36051 3.41796 3.43667 3.58807 4.38248 4.40953 4.56947 4.60023 4.69736 4.81154 4.94274 5.06688 5.21183 5.28786 5.37890 5.39064 5.43328 5.48986 5.56904 5.64402 5.70051 5.73882 5.79966 5.83137 5.94248 5.98726 6.06482 6.08061 6.15277 6.48927 6.50517 6.64206 6.70123 6.92788 7.15716 7.45535 7.67843 7.74035 8.04902 8.17860 8.44497 9.09236 9.70881 10.38991 11.29963 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.015201 B = 0.004193 C = 0.003455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1841.600025 B = 6675.518684 C = 8102.803789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.147 4.147 3 C -0.094 4.094 4 C -0.070 4.070 5 C -0.157 4.157 6 C 0.550 3.450 7 O -0.536 6.536 8 N -0.710 5.710 9 C 0.143 3.857 10 H 0.100 0.900 11 C 0.129 3.871 12 N -0.596 5.596 13 C -0.235 4.235 14 H 0.076 0.924 15 C -0.001 4.001 16 N -0.914 5.914 17 Si 0.912 3.088 18 H -0.287 1.287 19 H -0.289 1.289 20 H -0.279 1.279 21 C 0.152 3.848 22 C 0.067 3.933 23 H 0.061 0.939 24 O -0.564 6.564 25 C -0.160 4.160 26 C -0.144 4.144 27 H 0.094 0.906 28 H 0.095 0.905 29 H 0.109 0.891 30 H 0.068 0.932 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.398 0.602 35 H 0.029 0.971 36 H 0.033 0.967 37 H 0.255 0.745 38 H 0.062 0.938 39 H 0.046 0.954 40 H 0.377 0.623 41 H 0.102 0.898 42 H 0.098 0.902 43 H 0.103 0.897 44 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.588 4.562 13.633 19.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.165 4.165 3 C -0.131 4.131 4 C -0.108 4.108 5 C -0.160 4.160 6 C 0.335 3.665 7 O -0.412 6.412 8 N -0.360 5.360 9 C 0.038 3.962 10 H 0.118 0.882 11 C 0.002 3.998 12 N -0.323 5.323 13 C -0.364 4.364 14 H 0.094 0.906 15 C -0.199 4.199 16 N -0.560 5.560 17 Si 0.742 3.258 18 H -0.214 1.214 19 H -0.215 1.215 20 H -0.204 1.204 21 C 0.026 3.974 22 C 0.007 3.993 23 H 0.079 0.921 24 O -0.369 6.369 25 C -0.197 4.197 26 C -0.182 4.182 27 H 0.113 0.887 28 H 0.113 0.887 29 H 0.127 0.873 30 H 0.087 0.913 31 H 0.096 0.904 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.232 0.768 35 H 0.047 0.953 36 H 0.051 0.949 37 H 0.065 0.935 38 H 0.080 0.920 39 H 0.064 0.936 40 H 0.223 0.777 41 H 0.121 0.879 42 H 0.117 0.883 43 H 0.121 0.879 44 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -13.879 5.361 12.567 19.475 hybrid contribution 0.662 -1.518 -0.077 1.658 sum -13.216 3.843 12.490 18.586 Atomic orbital electron populations 1.23815 0.95945 1.01632 1.02389 1.23027 0.96041 0.98670 0.98795 1.20754 0.98025 0.95173 0.99195 1.21022 0.96446 0.94519 0.98768 1.21516 0.98855 0.95628 1.00050 1.19444 0.82272 0.79466 0.85291 1.90704 1.79012 1.41539 1.29940 1.45911 1.23000 1.43510 1.23594 1.21985 0.84392 1.00649 0.89158 0.88182 1.21661 0.91301 0.91739 0.95055 1.44213 1.04411 1.37470 1.46256 1.18993 0.93282 1.06211 1.17866 0.90631 1.24978 0.96050 0.99431 0.99441 1.69936 0.98526 1.38527 1.49007 0.86112 0.77165 0.82376 0.80157 1.21389 1.21550 1.20445 1.21925 0.90597 0.97105 0.87786 1.23568 0.91017 0.88804 0.95917 0.92094 1.86440 1.37673 1.35495 1.77245 1.23125 1.02270 1.02486 0.91801 1.22952 0.98572 0.95596 1.01059 0.88750 0.88670 0.87271 0.91314 0.90428 0.90886 0.90784 0.76793 0.95299 0.94864 0.93530 0.91989 0.93560 0.77659 0.87925 0.88337 0.87851 0.88069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.79 14.32 29.01 0.42 -1.37 16 2 C -0.15 -1.46 9.52 -36.03 -0.34 -1.80 16 3 C -0.09 -0.99 5.49 -27.88 -0.15 -1.14 16 4 C -0.07 -0.68 5.12 -26.73 -0.14 -0.81 16 5 C -0.16 -1.77 1.88 -155.66 -0.29 -2.06 16 6 C 0.55 8.58 7.06 -10.98 -0.08 8.50 16 7 O -0.54 -10.62 16.39 5.56 0.09 -10.53 16 8 N -0.71 -10.80 5.13 -52.03 -0.27 -11.07 16 9 C 0.14 2.72 3.01 -66.10 -0.20 2.52 16 10 H 0.10 2.16 7.63 -51.93 -0.40 1.76 16 11 C 0.13 2.84 6.99 -3.07 -0.02 2.82 16 12 N -0.60 -15.21 3.39 -170.07 -0.58 -15.79 16 13 C -0.24 -6.54 10.20 -15.06 -0.15 -6.69 16 14 H 0.08 2.05 7.84 -52.48 -0.41 1.63 16 15 C 0.00 -0.04 5.39 -17.43 -0.09 -0.13 16 16 N -0.91 -26.51 10.98 55.49 0.61 -25.90 16 17 Si 0.91 21.77 29.56 -169.99 -5.03 16.74 16 18 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 19 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 20 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 21 C 0.15 3.57 5.09 -2.53 -0.01 3.56 16 22 C 0.07 1.23 4.04 -24.58 -0.10 1.13 16 23 H 0.06 1.01 8.00 -51.93 -0.42 0.59 16 24 O -0.56 -9.50 13.47 -35.23 -0.47 -9.97 16 25 C -0.16 -1.45 9.88 -26.73 -0.26 -1.71 16 26 C -0.14 -1.46 9.41 -26.73 -0.25 -1.71 16 27 H 0.09 0.77 7.84 -52.48 -0.41 0.35 16 28 H 0.09 0.75 8.06 -52.49 -0.42 0.33 16 29 H 0.11 1.07 8.06 -52.49 -0.42 0.64 16 30 H 0.07 0.66 7.47 -51.93 -0.39 0.28 16 31 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 32 H 0.07 0.58 7.94 -51.93 -0.41 0.17 16 33 H 0.07 0.73 8.12 -51.93 -0.42 0.31 16 34 H 0.40 4.96 8.52 -40.82 -0.35 4.61 16 35 H 0.03 0.61 8.03 -51.93 -0.42 0.19 16 36 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 38 H 0.06 1.55 7.45 -51.93 -0.39 1.16 16 39 H 0.05 1.23 7.89 -51.93 -0.41 0.82 16 40 H 0.38 4.72 9.12 45.56 0.42 5.13 16 41 H 0.10 0.71 8.08 -51.93 -0.42 0.29 16 42 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 43 H 0.10 1.20 7.99 -51.93 -0.41 0.78 16 44 H 0.10 0.82 7.99 -51.93 -0.42 0.41 16 LS Contribution 366.42 15.07 5.52 5.52 Total: -1.00 -32.91 366.42 -8.30 -41.21 By element: Atomic # 1 Polarization: 15.18 SS G_CDS: -6.50 Total: 8.68 kcal Atomic # 6 Polarization: 2.78 SS G_CDS: -1.68 Total: 1.10 kcal Atomic # 7 Polarization: -52.52 SS G_CDS: -0.23 Total: -52.75 kcal Atomic # 8 Polarization: -20.12 SS G_CDS: -0.38 Total: -20.50 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.03 Total: 16.74 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -32.91 -8.30 -41.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001195897046.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.652 kcal (2) G-P(sol) polarization free energy of solvation -32.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds