Wall clock time and date at job start Tue Mar 31 2020 06:56:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50697 * 120.00391 * 2 1 4 4 C 1.53002 * 109.47215 * 124.99609 * 3 2 1 5 5 C 1.53001 * 109.47127 * 175.24232 * 4 3 2 6 6 C 1.50700 * 115.54751 * 279.48675 * 5 4 3 7 7 O 1.21278 * 120.00222 * 114.72671 * 6 5 4 8 8 N 1.34778 * 119.99982 * 294.72277 * 6 5 4 9 9 C 1.46496 * 120.00174 * 174.98228 * 8 6 5 10 10 H 1.08998 * 110.64251 * 36.69478 * 9 8 6 11 11 C 1.54326 * 110.72163 * 273.54467 * 9 8 6 12 12 N 1.47018 * 107.27433 * 219.44412 * 11 9 8 13 13 C 1.36928 * 125.64993 * 178.97653 * 12 11 9 14 14 H 1.08004 * 120.00243 * 341.90221 * 13 12 11 15 15 C 1.38820 * 120.00433 * 161.90595 * 13 12 11 16 16 N 1.31623 * 119.99323 * 351.91271 * 15 13 12 17 17 Si 1.86798 * 120.00175 * 171.90787 * 15 13 12 18 18 H 1.48499 * 109.46970 * 94.95682 * 17 15 13 19 19 H 1.48503 * 109.47020 * 214.95142 * 17 15 13 20 20 H 1.48498 * 109.47412 * 334.95676 * 17 15 13 21 21 C 1.47427 * 108.70181 * 358.94204 * 12 11 9 22 22 C 1.54911 * 104.83322 * 24.12670 * 21 12 11 23 23 H 1.09001 * 111.00091 * 81.06503 * 22 21 12 24 24 O 1.42903 * 111.00493 * 204.91310 * 22 21 12 25 25 C 1.52995 * 117.50277 * 133.77666 * 5 4 3 26 26 C 1.53000 * 117.50043 * 65.14865 * 5 4 3 27 27 H 1.08005 * 119.99381 * 0.02562 * 1 2 3 28 28 H 1.07994 * 119.99988 * 179.97438 * 1 2 3 29 29 H 1.08000 * 119.99817 * 179.97438 * 2 1 3 30 30 H 1.09005 * 109.47153 * 4.99800 * 3 2 1 31 31 H 1.08999 * 109.47375 * 244.99671 * 3 2 1 32 32 H 1.09005 * 109.47191 * 295.23868 * 4 3 2 33 33 H 1.08993 * 109.47556 * 55.24205 * 4 3 2 34 34 H 0.97007 * 119.99631 * 354.98182 * 8 6 5 35 35 H 1.09005 * 109.87963 * 338.86433 * 11 9 8 36 36 H 1.09004 * 109.88011 * 99.87083 * 11 9 8 37 37 H 0.97002 * 119.99597 * 180.02562 * 16 15 13 38 38 H 1.08999 * 110.36613 * 142.96851 * 21 12 11 39 39 H 1.09002 * 110.36755 * 265.17844 * 21 12 11 40 40 H 0.96701 * 114.00265 * 292.20354 * 24 22 21 41 41 H 1.08999 * 117.49660 * 359.97438 * 25 5 4 42 42 H 1.08995 * 117.50532 * 145.02075 * 25 5 4 43 43 H 1.08999 * 117.49961 * 214.97763 * 26 5 4 44 44 H 1.08999 * 117.49949 * 0.02562 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 3.0351 1.3330 1.1817 5 6 3.8835 2.6044 1.1144 6 6 5.0510 2.5571 0.1627 7 8 5.0717 3.2836 -0.8082 8 7 6.0721 1.7075 0.3905 9 6 7.1531 1.5817 -0.5902 10 1 7.3768 2.5483 -1.0415 11 6 6.7898 0.5442 -1.6733 12 7 8.0107 -0.2172 -1.9754 13 6 8.1072 -1.2478 -2.8719 14 1 7.2157 -1.7568 -3.2076 15 6 9.3508 -1.6386 -3.3491 16 7 10.4185 -0.9222 -3.0674 17 14 9.5089 -3.1809 -4.3910 18 1 9.4657 -2.8134 -5.8291 19 1 10.7994 -3.8514 -4.0900 20 1 8.3876 -4.1041 -4.0821 21 6 9.1140 0.3132 -1.1540 22 6 8.4202 0.9711 0.0648 23 1 8.1524 0.2242 0.8121 24 8 9.2441 1.9903 0.6347 25 6 4.0557 3.4080 2.4049 26 6 3.1636 3.9439 1.2832 27 1 -0.5399 0.9354 -0.0004 28 1 -0.5400 -0.9353 -0.0004 29 1 1.8500 -0.9353 0.0004 30 1 1.3587 2.1316 0.0895 31 1 2.6214 1.4025 -0.9313 32 1 2.4723 1.3208 2.1151 33 1 3.6855 0.4595 1.1381 34 1 6.0912 1.1792 1.2039 35 1 6.0172 -0.1274 -1.2989 36 1 6.4360 1.0529 -2.5701 37 1 11.2874 -1.1950 -3.4012 38 1 9.7669 -0.4963 -0.8275 39 1 9.6822 1.0550 -1.7153 40 1 10.0481 1.6565 1.0557 41 1 3.5641 3.0312 3.3018 42 1 5.0135 3.9026 2.5659 43 1 3.5348 4.7910 0.7063 44 1 2.0856 3.9194 1.4426 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001195897046.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:50 Heat of formation + Delta-G solvation = -46.509061 kcal Electronic energy + Delta-G solvation = -24175.817523 eV Core-core repulsion = 20707.907389 eV Total energy + Delta-G solvation = -3467.910134 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.42336 -39.75656 -38.02929 -36.71874 -35.81062 -35.56326 -33.64533 -31.02248 -30.27454 -28.93302 -26.69065 -25.43961 -23.84296 -23.24015 -22.50879 -21.71650 -20.58913 -20.48382 -19.01083 -18.46849 -17.83540 -17.30813 -16.68558 -16.52183 -16.21272 -15.85272 -15.63879 -15.12764 -14.91631 -14.77782 -14.68492 -14.10644 -13.99020 -13.89792 -13.32058 -13.24610 -13.13147 -13.08420 -12.82681 -12.76583 -12.44651 -12.16848 -12.11513 -11.94478 -11.88722 -11.59901 -11.35800 -11.12946 -10.96907 -10.80851 -10.67838 -10.19842 -10.14864 -8.91764 -7.95851 -5.37388 1.42321 1.45258 1.46739 1.53358 1.56948 2.01509 2.44949 2.74581 3.02831 3.24767 3.55924 3.58876 3.67827 3.83348 3.84635 4.00845 4.02759 4.15631 4.16982 4.33262 4.37895 4.54895 4.55523 4.58035 4.72349 4.79013 4.80700 4.90520 4.99665 5.01966 5.04825 5.19100 5.20626 5.24984 5.29743 5.42069 5.46517 5.56363 5.78923 5.92079 6.11048 6.52066 6.83661 6.98755 7.21930 7.62940 8.30872 9.15924 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.015201 B = 0.004193 C = 0.003455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1841.600025 B = 6675.518684 C = 8102.803789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.165 4.165 3 C -0.092 4.092 4 C -0.063 4.063 5 C -0.167 4.167 6 C 0.546 3.454 7 O -0.586 6.586 8 N -0.697 5.697 9 C 0.156 3.844 10 H 0.070 0.930 11 C 0.132 3.868 12 N -0.614 5.614 13 C -0.255 4.255 14 H 0.077 0.923 15 C -0.053 4.053 16 N -0.944 5.944 17 Si 0.981 3.019 18 H -0.288 1.288 19 H -0.287 1.287 20 H -0.265 1.265 21 C 0.158 3.842 22 C 0.095 3.905 23 H 0.095 0.905 24 O -0.567 6.567 25 C -0.134 4.134 26 C -0.148 4.148 27 H 0.103 0.897 28 H 0.106 0.894 29 H 0.107 0.893 30 H 0.077 0.923 31 H 0.042 0.958 32 H 0.103 0.897 33 H 0.071 0.929 34 H 0.416 0.584 35 H 0.043 0.957 36 H 0.005 0.995 37 H 0.252 0.748 38 H 0.043 0.957 39 H 0.006 0.994 40 H 0.398 0.602 41 H 0.137 0.863 42 H 0.092 0.908 43 H 0.080 0.920 44 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.386 3.658 16.212 22.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.183 4.183 3 C -0.129 4.129 4 C -0.100 4.100 5 C -0.171 4.171 6 C 0.333 3.667 7 O -0.465 6.465 8 N -0.348 5.348 9 C 0.050 3.950 10 H 0.088 0.912 11 C 0.006 3.994 12 N -0.342 5.342 13 C -0.384 4.384 14 H 0.095 0.905 15 C -0.248 4.248 16 N -0.590 5.590 17 Si 0.808 3.192 18 H -0.215 1.215 19 H -0.213 1.213 20 H -0.190 1.190 21 C 0.032 3.968 22 C 0.034 3.966 23 H 0.112 0.888 24 O -0.375 6.375 25 C -0.171 4.171 26 C -0.185 4.185 27 H 0.121 0.879 28 H 0.124 0.876 29 H 0.125 0.875 30 H 0.096 0.904 31 H 0.060 0.940 32 H 0.121 0.879 33 H 0.089 0.911 34 H 0.253 0.747 35 H 0.061 0.939 36 H 0.023 0.977 37 H 0.061 0.939 38 H 0.062 0.938 39 H 0.024 0.976 40 H 0.248 0.752 41 H 0.155 0.845 42 H 0.111 0.889 43 H 0.099 0.901 44 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -15.687 4.447 15.203 22.293 hybrid contribution 1.195 -1.163 -0.922 1.906 sum -14.491 3.283 14.281 20.609 Atomic orbital electron populations 1.24008 0.95618 1.02625 1.00471 1.23004 0.96499 0.98232 1.00540 1.20708 0.98176 0.95980 0.98070 1.21035 0.96080 0.93309 0.99593 1.21436 0.97614 0.97237 1.00772 1.20313 0.82938 0.78135 0.85266 1.90682 1.80050 1.43477 1.32333 1.45710 1.21967 1.43793 1.23339 1.21485 0.86116 0.98077 0.89361 0.91212 1.21679 0.90451 0.92178 0.95108 1.44486 1.05858 1.37457 1.46393 1.19361 0.93608 1.06995 1.18456 0.90480 1.25821 0.95645 1.02500 1.00799 1.70124 0.98771 1.40079 1.50040 0.85052 0.77373 0.78786 0.78006 1.21505 1.21350 1.18991 1.21757 0.90191 0.95605 0.89287 1.23183 0.89830 0.89093 0.94460 0.88754 1.86411 1.38804 1.35217 1.77058 1.23268 1.01880 1.00203 0.91786 1.23038 1.00141 0.93932 1.01417 0.87859 0.87587 0.87531 0.90427 0.93953 0.87853 0.91065 0.74652 0.93859 0.97663 0.93878 0.93827 0.97600 0.75158 0.84502 0.88947 0.90127 0.85586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.95 14.32 67.78 0.97 -1.98 16 2 C -0.16 -3.01 9.52 25.65 0.24 -2.76 16 3 C -0.09 -1.83 5.49 29.85 0.16 -1.66 16 4 C -0.06 -1.05 5.12 30.60 0.16 -0.89 16 5 C -0.17 -3.44 1.88 -52.93 -0.10 -3.54 16 6 C 0.55 16.94 7.06 87.66 0.62 17.55 16 7 O -0.59 -24.15 16.39 -3.02 -0.05 -24.20 16 8 N -0.70 -20.60 5.13 -436.92 -2.24 -22.84 16 9 C 0.16 6.01 3.01 46.18 0.14 6.15 16 10 H 0.07 3.15 7.63 -2.39 -0.02 3.13 16 11 C 0.13 5.98 6.99 86.73 0.61 6.59 16 12 N -0.61 -32.26 3.39 -691.97 -2.34 -34.61 16 13 C -0.26 -14.49 10.20 84.04 0.86 -13.63 16 14 H 0.08 4.23 7.84 -2.91 -0.02 4.21 16 15 C -0.05 -3.00 5.39 84.86 0.46 -2.54 16 16 N -0.94 -56.21 10.98 21.65 0.24 -55.97 16 17 Si 0.98 45.16 29.56 68.60 2.03 47.18 16 18 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 19 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 20 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 21 C 0.16 7.63 5.09 86.86 0.44 8.07 16 22 C 0.09 3.41 4.04 31.99 0.13 3.54 16 23 H 0.09 2.85 8.00 -2.39 -0.02 2.83 16 24 O -0.57 -18.38 13.47 -148.98 -2.01 -20.39 16 25 C -0.13 -1.97 9.88 30.59 0.30 -1.66 16 26 C -0.15 -2.68 9.41 30.60 0.29 -2.39 16 27 H 0.10 1.40 7.84 -2.91 -0.02 1.38 16 28 H 0.11 1.40 8.06 -2.91 -0.02 1.38 16 29 H 0.11 1.96 8.06 -2.91 -0.02 1.94 16 30 H 0.08 1.36 7.47 -2.38 -0.02 1.34 16 31 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.10 1.16 7.94 -2.38 -0.02 1.14 16 33 H 0.07 1.24 8.12 -2.39 -0.02 1.22 16 34 H 0.42 9.33 8.52 -92.70 -0.79 8.54 16 35 H 0.04 1.83 8.03 -2.38 -0.02 1.81 16 36 H 0.01 0.27 8.14 -2.38 -0.02 0.25 16 37 H 0.25 14.48 8.31 -92.71 -0.77 13.71 16 38 H 0.04 2.24 7.45 -2.39 -0.02 2.22 16 39 H 0.01 0.33 7.89 -2.39 -0.02 0.31 16 40 H 0.40 9.21 9.12 -74.06 -0.68 8.54 16 41 H 0.14 1.14 8.08 -2.39 -0.02 1.12 16 42 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 43 H 0.08 1.85 7.99 -2.39 -0.02 1.83 16 44 H 0.13 1.64 7.99 -2.39 -0.02 1.62 16 Total: -1.00 -75.02 366.42 0.43 -74.59 By element: Atomic # 1 Polarization: 25.86 SS G_CDS: -0.47 Total: 25.39 kcal Atomic # 6 Polarization: 5.57 SS G_CDS: 5.28 Total: 10.84 kcal Atomic # 7 Polarization: -109.07 SS G_CDS: -4.35 Total: -113.42 kcal Atomic # 8 Polarization: -42.53 SS G_CDS: -2.06 Total: -44.59 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.18 kcal Total: -75.02 0.43 -74.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001195897046.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.079 kcal (2) G-P(sol) polarization free energy of solvation -75.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds