Wall clock time and date at job start Tue Mar 31 2020 07:26:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47299 * 2 1 4 4 C 1.53002 * 109.47299 * 180.02562 * 3 2 1 5 5 N 1.46503 * 109.47142 * 179.97438 * 4 3 2 6 6 C 1.36977 * 119.99507 * 264.53586 * 5 4 3 7 7 H 1.08005 * 119.99262 * 145.98988 * 6 5 4 8 8 C 1.38969 * 120.00485 * 325.98718 * 6 5 4 9 9 N 1.31420 * 120.00026 * 337.79196 * 8 6 5 10 10 Si 1.86800 * 120.00200 * 157.78786 * 8 6 5 11 11 H 1.48498 * 109.47032 * 90.00094 * 10 8 6 12 12 H 1.48501 * 109.47314 * 210.00302 * 10 8 6 13 13 H 1.48500 * 109.47135 * 330.00422 * 10 8 6 14 14 C 1.34772 * 119.99909 * 84.53919 * 5 4 3 15 15 O 1.21632 * 120.00060 * 359.97438 * 14 5 4 16 16 C 1.47320 * 119.99558 * 180.02562 * 14 5 4 17 17 C 1.47134 * 128.57569 * 90.04273 * 16 14 5 18 18 C 1.50700 * 127.32762 * 359.94053 * 17 16 14 19 19 N 1.30006 * 105.33083 * 179.97438 * 17 16 14 20 20 O 1.20651 * 112.32548 * 359.70105 * 19 17 16 21 21 C 1.33519 * 113.15912 * 0.50223 * 20 19 17 22 22 C 1.50701 * 126.83947 * 179.77828 * 21 20 19 23 23 C 1.52998 * 109.46892 * 299.69199 * 22 21 20 24 24 C 1.52998 * 109.46622 * 59.68724 * 22 21 20 25 25 H 1.09000 * 109.47172 * 300.00621 * 1 2 3 26 26 H 1.09001 * 109.46926 * 60.00451 * 1 2 3 27 27 H 1.09000 * 109.47059 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47172 * 239.99378 * 2 1 3 29 29 H 1.09001 * 109.46926 * 119.99549 * 2 1 3 30 30 H 1.09000 * 109.47516 * 59.99589 * 3 2 1 31 31 H 1.09004 * 109.46953 * 300.00142 * 3 2 1 32 32 H 1.08992 * 109.46958 * 59.99629 * 4 3 2 33 33 H 1.08993 * 109.46786 * 299.99839 * 4 3 2 34 34 H 0.97004 * 119.99691 * 179.97438 * 9 8 6 35 35 H 1.08995 * 109.47014 * 90.00519 * 18 17 16 36 36 H 1.09004 * 109.46832 * 209.99828 * 18 17 16 37 37 H 1.08995 * 109.47552 * 329.99988 * 18 17 16 38 38 H 1.08995 * 109.47260 * 179.68853 * 22 21 20 39 39 H 1.09004 * 109.46897 * 179.97438 * 23 22 21 40 40 H 1.08995 * 109.47450 * 59.99771 * 23 22 21 41 41 H 1.09000 * 109.47103 * 299.99338 * 23 22 21 42 42 H 1.08997 * 109.47917 * 299.99993 * 24 22 21 43 43 H 1.08999 * 109.47105 * 60.00812 * 24 22 21 44 44 H 1.09004 * 109.46763 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5701 1.4424 -0.0006 5 7 4.0584 2.8237 -0.0013 6 6 4.3927 3.4313 -1.1825 7 1 4.2226 4.4900 -1.3122 8 6 4.9507 2.6857 -2.2140 9 7 5.5553 1.5490 -1.9505 10 14 4.8412 3.2991 -3.9750 11 1 6.0240 4.1439 -4.2793 12 1 4.8095 2.1394 -4.9021 13 1 3.6032 4.1017 -4.1436 14 6 4.1788 3.4964 1.1604 15 8 3.8816 2.9569 2.2092 16 6 4.6693 4.8855 1.1596 17 6 3.8950 6.1318 1.0511 18 6 2.4007 6.2702 0.9128 19 7 4.7744 7.0882 1.0992 20 8 5.8999 6.6702 1.2186 21 6 5.9633 5.3372 1.2607 22 6 7.2059 4.4957 1.3981 23 6 8.1403 4.7695 0.2179 24 6 7.9186 4.8483 2.7052 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.6767 1.9564 0.8899 31 1 1.6767 1.9563 -0.8900 32 1 3.9330 0.9287 -0.8908 33 1 3.9337 0.9285 0.8891 34 1 5.9444 1.0284 -2.6706 35 1 1.9488 6.3357 1.9025 36 1 2.1703 7.1733 0.3477 37 1 2.0024 5.4018 0.3882 38 1 6.9313 3.4410 1.4070 39 1 9.0393 4.1612 0.3175 40 1 8.4150 5.8243 0.2090 41 1 7.6326 4.5183 -0.7134 42 1 8.1932 5.9031 2.6964 43 1 7.2529 4.6532 3.5460 44 1 8.8176 4.2400 2.8044 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001197353319.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:26:42 Heat of formation + Delta-G solvation = -1.860983 kcal Electronic energy + Delta-G solvation = -25257.074596 eV Core-core repulsion = 21791.100548 eV Total energy + Delta-G solvation = -3465.974048 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -44.14013 -38.59821 -35.62896 -35.30153 -34.06285 -33.76574 -31.58318 -30.31374 -28.52671 -28.15091 -26.84553 -25.06111 -24.22381 -22.35194 -22.13702 -20.49117 -19.42924 -18.76774 -17.52263 -17.05024 -16.09497 -15.63753 -15.02459 -14.74478 -14.59153 -14.42246 -13.77308 -13.62842 -13.07363 -13.02076 -12.79727 -12.69946 -12.58890 -12.42110 -12.27396 -12.03413 -11.92045 -11.50926 -11.30650 -11.10991 -11.03861 -10.89084 -10.83165 -10.65377 -10.55615 -10.40684 -10.32096 -10.25745 -9.80707 -9.25349 -9.20033 -8.81649 -8.47478 -7.64021 -6.48946 -4.13315 2.08564 2.65291 3.03342 3.15485 3.19695 3.52092 3.64615 4.03162 4.57374 4.78814 4.82326 4.96272 5.30727 5.37682 5.42967 5.45474 5.53042 5.62611 5.83088 5.84081 5.89304 5.90898 5.99784 6.03638 6.08298 6.14702 6.21484 6.24655 6.26426 6.34630 6.37627 6.41351 6.50835 6.60858 6.65716 6.66476 6.68679 6.79024 7.05246 7.29186 7.40883 7.77724 8.28876 8.88003 8.96244 9.37525 9.80423 10.52149 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.011838 B = 0.006851 C = 0.005761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2364.692757 B = 4085.875138 C = 4858.872697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.119 4.119 3 C -0.129 4.129 4 C 0.114 3.886 5 N -0.418 5.418 6 C -0.334 4.334 7 H 0.087 0.913 8 C 0.049 3.951 9 N -0.853 5.853 10 Si 0.907 3.093 11 H -0.276 1.276 12 H -0.280 1.280 13 H -0.268 1.268 14 C 0.535 3.465 15 O -0.595 6.595 16 C -0.180 4.180 17 C 0.038 3.962 18 C -0.069 4.069 19 N -0.372 5.372 20 O 0.085 5.915 21 C 0.005 3.995 22 C -0.005 4.005 23 C -0.144 4.144 24 C -0.146 4.146 25 H 0.050 0.950 26 H 0.050 0.950 27 H 0.047 0.953 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.054 0.946 31 H 0.058 0.942 32 H 0.110 0.890 33 H 0.053 0.947 34 H 0.271 0.729 35 H 0.076 0.924 36 H 0.073 0.927 37 H 0.083 0.917 38 H 0.104 0.896 39 H 0.062 0.938 40 H 0.055 0.945 41 H 0.070 0.930 42 H 0.059 0.941 43 H 0.058 0.942 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.542 1.959 1.680 2.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.157 4.157 3 C -0.168 4.168 4 C -0.009 4.009 5 N -0.134 5.134 6 C -0.462 4.462 7 H 0.105 0.895 8 C -0.158 4.158 9 N -0.489 5.489 10 Si 0.732 3.268 11 H -0.201 1.201 12 H -0.205 1.205 13 H -0.193 1.193 14 C 0.323 3.677 15 O -0.481 6.481 16 C -0.187 4.187 17 C -0.123 4.123 18 C -0.127 4.127 19 N -0.080 5.080 20 O 0.024 5.976 21 C -0.058 4.058 22 C -0.024 4.024 23 C -0.201 4.201 24 C -0.204 4.204 25 H 0.069 0.931 26 H 0.070 0.930 27 H 0.066 0.934 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.077 0.923 32 H 0.128 0.872 33 H 0.072 0.928 34 H 0.081 0.919 35 H 0.095 0.905 36 H 0.092 0.908 37 H 0.101 0.899 38 H 0.122 0.878 39 H 0.081 0.919 40 H 0.074 0.926 41 H 0.089 0.911 42 H 0.078 0.922 43 H 0.077 0.923 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -0.646 2.823 2.000 3.520 hybrid contribution -0.212 -0.467 -1.075 1.191 sum -0.859 2.357 0.925 2.673 Atomic orbital electron populations 1.21756 0.96597 1.00713 1.01492 1.21420 0.95016 0.97612 1.01643 1.21911 0.97706 0.95688 1.01464 1.21512 0.91282 0.84238 1.03881 1.43436 1.53503 1.11886 1.04588 1.19336 1.41484 0.95229 0.90148 0.89540 1.25255 0.94079 0.96227 1.00207 1.69934 1.30936 1.14765 1.33252 0.86254 0.79223 0.78702 0.82572 1.20133 1.20514 1.19283 1.17074 0.82348 0.84196 0.84114 1.90652 1.55997 1.69682 1.31814 1.21989 0.92175 0.95631 1.08928 1.24666 0.97999 0.87815 1.01853 1.20091 0.86355 1.03483 1.02768 1.73457 0.90241 1.23325 1.20972 1.84369 1.23976 1.20935 1.68361 1.24350 0.96641 0.83311 1.01510 1.19693 0.88608 0.97668 0.96436 1.21809 0.98678 1.01407 0.98196 1.21872 1.00306 1.01864 0.96343 0.93061 0.93040 0.93396 0.92221 0.92355 0.92744 0.92276 0.87190 0.92830 0.91884 0.90495 0.90783 0.89850 0.87793 0.91908 0.92597 0.91055 0.92208 0.92286 0.91650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 9.91 37.16 0.37 -1.66 16 2 C -0.12 -1.93 5.93 -26.73 -0.16 -2.08 16 3 C -0.13 -2.53 5.50 -26.73 -0.15 -2.68 16 4 C 0.11 2.60 4.89 -4.04 -0.02 2.58 16 5 N -0.42 -10.16 2.55 -116.07 -0.30 -10.46 16 6 C -0.33 -8.20 8.72 -14.98 -0.13 -8.33 16 7 H 0.09 2.17 7.30 -52.48 -0.38 1.79 16 8 C 0.05 1.17 4.92 -17.46 -0.09 1.09 16 9 N -0.85 -21.03 11.34 55.50 0.63 -20.41 16 10 Si 0.91 18.96 29.61 -169.99 -5.03 13.92 16 11 H -0.28 -5.79 7.11 56.52 0.40 -5.38 16 12 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 13 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 14 C 0.54 13.12 7.08 -12.57 -0.09 13.03 16 15 O -0.60 -15.85 16.78 5.25 0.09 -15.76 16 16 C -0.18 -4.02 4.62 -102.89 -0.48 -4.49 16 17 C 0.04 0.78 7.59 -79.76 -0.61 0.17 16 18 C -0.07 -1.16 10.49 36.01 0.38 -0.78 16 19 N -0.37 -7.49 12.01 34.79 0.42 -7.07 16 20 O 0.09 1.67 11.06 18.59 0.21 1.88 16 21 C 0.00 0.09 6.06 -34.60 -0.21 -0.12 16 22 C 0.00 -0.08 3.33 -91.77 -0.31 -0.38 16 23 C -0.14 -2.26 9.17 37.16 0.34 -1.92 16 24 C -0.15 -2.07 9.17 37.16 0.34 -1.73 16 25 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 26 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 31 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 32 H 0.11 2.63 5.35 -51.93 -0.28 2.35 16 33 H 0.05 1.27 7.59 -51.93 -0.39 0.88 16 34 H 0.27 6.33 8.31 -40.82 -0.34 5.99 16 35 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 36 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 37 H 0.08 1.44 8.14 -51.93 -0.42 1.01 16 38 H 0.10 2.07 7.71 -51.93 -0.40 1.67 16 39 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 40 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 42 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 43 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 44 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 368.60 15.07 5.55 5.55 Total: -1.00 -27.99 368.60 -6.59 -34.58 By element: Atomic # 1 Polarization: 12.42 SS G_CDS: -7.35 Total: 5.07 kcal Atomic # 6 Polarization: -6.51 SS G_CDS: -0.80 Total: -7.31 kcal Atomic # 7 Polarization: -38.68 SS G_CDS: 0.75 Total: -37.93 kcal Atomic # 8 Polarization: -14.18 SS G_CDS: 0.29 Total: -13.88 kcal Atomic # 14 Polarization: 18.96 SS G_CDS: -5.03 Total: 13.92 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -27.99 -6.59 -34.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001197353319.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.716 kcal (2) G-P(sol) polarization free energy of solvation -27.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds