Wall clock time and date at job start Tue Mar 31 2020 07:26:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47299 * 2 1 4 4 C 1.53002 * 109.47299 * 180.02562 * 3 2 1 5 5 N 1.46503 * 109.47142 * 179.97438 * 4 3 2 6 6 C 1.36977 * 119.99507 * 264.53586 * 5 4 3 7 7 H 1.08005 * 119.99262 * 145.98988 * 6 5 4 8 8 C 1.38969 * 120.00485 * 325.98718 * 6 5 4 9 9 N 1.31420 * 120.00026 * 337.79196 * 8 6 5 10 10 Si 1.86800 * 120.00200 * 157.78786 * 8 6 5 11 11 H 1.48498 * 109.47032 * 90.00094 * 10 8 6 12 12 H 1.48501 * 109.47314 * 210.00302 * 10 8 6 13 13 H 1.48500 * 109.47135 * 330.00422 * 10 8 6 14 14 C 1.34772 * 119.99909 * 84.53919 * 5 4 3 15 15 O 1.21632 * 120.00060 * 359.97438 * 14 5 4 16 16 C 1.47320 * 119.99558 * 180.02562 * 14 5 4 17 17 C 1.47134 * 128.57569 * 90.04273 * 16 14 5 18 18 C 1.50700 * 127.32762 * 359.94053 * 17 16 14 19 19 N 1.30006 * 105.33083 * 179.97438 * 17 16 14 20 20 O 1.20651 * 112.32548 * 359.70105 * 19 17 16 21 21 C 1.33519 * 113.15912 * 0.50223 * 20 19 17 22 22 C 1.50701 * 126.83947 * 179.77828 * 21 20 19 23 23 C 1.52998 * 109.46892 * 299.69199 * 22 21 20 24 24 C 1.52998 * 109.46622 * 59.68724 * 22 21 20 25 25 H 1.09000 * 109.47172 * 300.00621 * 1 2 3 26 26 H 1.09001 * 109.46926 * 60.00451 * 1 2 3 27 27 H 1.09000 * 109.47059 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47172 * 239.99378 * 2 1 3 29 29 H 1.09001 * 109.46926 * 119.99549 * 2 1 3 30 30 H 1.09000 * 109.47516 * 59.99589 * 3 2 1 31 31 H 1.09004 * 109.46953 * 300.00142 * 3 2 1 32 32 H 1.08992 * 109.46958 * 59.99629 * 4 3 2 33 33 H 1.08993 * 109.46786 * 299.99839 * 4 3 2 34 34 H 0.97004 * 119.99691 * 179.97438 * 9 8 6 35 35 H 1.08995 * 109.47014 * 90.00519 * 18 17 16 36 36 H 1.09004 * 109.46832 * 209.99828 * 18 17 16 37 37 H 1.08995 * 109.47552 * 329.99988 * 18 17 16 38 38 H 1.08995 * 109.47260 * 179.68853 * 22 21 20 39 39 H 1.09004 * 109.46897 * 179.97438 * 23 22 21 40 40 H 1.08995 * 109.47450 * 59.99771 * 23 22 21 41 41 H 1.09000 * 109.47103 * 299.99338 * 23 22 21 42 42 H 1.08997 * 109.47917 * 299.99993 * 24 22 21 43 43 H 1.08999 * 109.47105 * 60.00812 * 24 22 21 44 44 H 1.09004 * 109.46763 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5701 1.4424 -0.0006 5 7 4.0584 2.8237 -0.0013 6 6 4.3927 3.4313 -1.1825 7 1 4.2226 4.4900 -1.3122 8 6 4.9507 2.6857 -2.2140 9 7 5.5553 1.5490 -1.9505 10 14 4.8412 3.2991 -3.9750 11 1 6.0240 4.1439 -4.2793 12 1 4.8095 2.1394 -4.9021 13 1 3.6032 4.1017 -4.1436 14 6 4.1788 3.4964 1.1604 15 8 3.8816 2.9569 2.2092 16 6 4.6693 4.8855 1.1596 17 6 3.8950 6.1318 1.0511 18 6 2.4007 6.2702 0.9128 19 7 4.7744 7.0882 1.0992 20 8 5.8999 6.6702 1.2186 21 6 5.9633 5.3372 1.2607 22 6 7.2059 4.4957 1.3981 23 6 8.1403 4.7695 0.2179 24 6 7.9186 4.8483 2.7052 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.6767 1.9564 0.8899 31 1 1.6767 1.9563 -0.8900 32 1 3.9330 0.9287 -0.8908 33 1 3.9337 0.9285 0.8891 34 1 5.9444 1.0284 -2.6706 35 1 1.9488 6.3357 1.9025 36 1 2.1703 7.1733 0.3477 37 1 2.0024 5.4018 0.3882 38 1 6.9313 3.4410 1.4070 39 1 9.0393 4.1612 0.3175 40 1 8.4150 5.8243 0.2090 41 1 7.6326 4.5183 -0.7134 42 1 8.1932 5.9031 2.6964 43 1 7.2529 4.6532 3.5460 44 1 8.8176 4.2400 2.8044 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001197353319.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:26:41 Heat of formation + Delta-G solvation = -15.056123 kcal Electronic energy + Delta-G solvation = -25257.646780 eV Core-core repulsion = 21791.100548 eV Total energy + Delta-G solvation = -3466.546233 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -45.73622 -40.48438 -37.25329 -36.88050 -35.68248 -35.31119 -33.46626 -31.86493 -30.06365 -29.61387 -28.06503 -26.96354 -25.83311 -23.76876 -23.73055 -21.98437 -21.23952 -20.37002 -19.24892 -18.66668 -17.89583 -17.30012 -16.70699 -16.36430 -16.26715 -16.03257 -15.40411 -15.11896 -14.54669 -14.38198 -14.33956 -14.09172 -14.07887 -13.83512 -13.76175 -13.63247 -13.14493 -13.04967 -13.04198 -12.78571 -12.47717 -12.26360 -12.22064 -12.19332 -12.09630 -11.97644 -11.83367 -11.75611 -11.44077 -11.06568 -10.84384 -10.66607 -10.16095 -9.55467 -8.36613 -6.07609 0.48157 1.02194 1.33397 1.44225 1.53590 1.74559 1.97782 2.27482 2.88454 2.97198 3.28770 3.34221 3.90845 3.96240 4.08249 4.12651 4.15387 4.29639 4.33454 4.42095 4.49718 4.55681 4.56717 4.71946 4.77191 4.78638 4.84781 4.87401 4.90120 4.95773 4.99893 5.05888 5.10054 5.13914 5.18433 5.29868 5.35065 5.35934 5.42094 5.42973 5.55506 5.88993 6.37490 7.04663 7.27475 7.46217 7.90184 8.65212 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.011838 B = 0.006851 C = 0.005761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2364.692757 B = 4085.875138 C = 4858.872697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.115 4.115 3 C -0.117 4.117 4 C 0.115 3.885 5 N -0.422 5.422 6 C -0.347 4.347 7 H 0.079 0.921 8 C 0.020 3.980 9 N -0.874 5.874 10 Si 0.965 3.035 11 H -0.274 1.274 12 H -0.272 1.272 13 H -0.267 1.267 14 C 0.531 3.469 15 O -0.628 6.628 16 C -0.223 4.223 17 C 0.036 3.964 18 C -0.068 4.068 19 N -0.376 5.376 20 O 0.091 5.909 21 C 0.017 3.983 22 C -0.008 4.008 23 C -0.135 4.135 24 C -0.138 4.138 25 H 0.051 0.949 26 H 0.055 0.945 27 H 0.070 0.930 28 H 0.063 0.937 29 H 0.057 0.943 30 H 0.039 0.961 31 H 0.056 0.944 32 H 0.101 0.899 33 H 0.034 0.966 34 H 0.276 0.724 35 H 0.094 0.906 36 H 0.098 0.902 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.087 0.913 40 H 0.075 0.925 41 H 0.039 0.961 42 H 0.076 0.924 43 H 0.047 0.953 44 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.413 2.611 0.824 2.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.153 4.153 3 C -0.155 4.155 4 C -0.008 4.008 5 N -0.137 5.137 6 C -0.474 4.474 7 H 0.096 0.904 8 C -0.185 4.185 9 N -0.510 5.510 10 Si 0.789 3.211 11 H -0.199 1.199 12 H -0.197 1.197 13 H -0.191 1.191 14 C 0.319 3.681 15 O -0.517 6.517 16 C -0.230 4.230 17 C -0.126 4.126 18 C -0.126 4.126 19 N -0.084 5.084 20 O 0.031 5.969 21 C -0.047 4.047 22 C -0.027 4.027 23 C -0.192 4.192 24 C -0.195 4.195 25 H 0.070 0.930 26 H 0.074 0.926 27 H 0.089 0.911 28 H 0.082 0.918 29 H 0.076 0.924 30 H 0.058 0.942 31 H 0.075 0.925 32 H 0.118 0.882 33 H 0.052 0.948 34 H 0.086 0.914 35 H 0.112 0.888 36 H 0.117 0.883 37 H 0.091 0.909 38 H 0.090 0.910 39 H 0.106 0.894 40 H 0.094 0.906 41 H 0.058 0.942 42 H 0.095 0.905 43 H 0.066 0.934 44 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -0.511 3.474 1.135 3.690 hybrid contribution -0.191 -0.696 -0.794 1.073 sum -0.703 2.778 0.341 2.886 Atomic orbital electron populations 1.21712 0.94177 1.02358 1.01769 1.21402 0.97096 0.94958 1.01850 1.21787 0.95188 0.98049 1.00503 1.21523 0.93441 0.83570 1.02270 1.43625 1.53140 1.12218 1.04692 1.19360 1.42456 0.95115 0.90515 0.90360 1.25913 0.93237 0.96239 1.03109 1.69999 1.31036 1.15550 1.34461 0.85360 0.79084 0.78373 0.78282 1.19917 1.19713 1.19094 1.17348 0.81992 0.85122 0.83641 1.90601 1.57587 1.70781 1.32763 1.21986 0.93788 0.95251 1.12006 1.25151 0.99539 0.86919 1.00974 1.20217 0.84129 1.04160 1.04065 1.73425 0.90286 1.23173 1.21564 1.84355 1.23921 1.20431 1.68216 1.24809 0.96958 0.83570 0.99321 1.19814 0.88307 0.95373 0.99227 1.21758 0.98684 1.03172 0.95630 1.21843 1.00607 1.03486 0.93608 0.93031 0.92557 0.91070 0.91810 0.92382 0.94165 0.92546 0.88153 0.94757 0.91397 0.88797 0.88324 0.90869 0.91015 0.89430 0.90592 0.94207 0.90453 0.93384 0.88995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.66 9.91 71.98 0.71 -2.95 16 2 C -0.11 -3.67 5.93 30.59 0.18 -3.49 16 3 C -0.12 -4.67 5.50 30.59 0.17 -4.50 16 4 C 0.11 5.44 4.89 86.38 0.42 5.86 16 5 N -0.42 -21.23 2.55 -639.37 -1.63 -22.86 16 6 C -0.35 -17.38 8.72 84.06 0.73 -16.64 16 7 H 0.08 4.01 7.30 -2.91 -0.02 3.99 16 8 C 0.02 0.96 4.92 84.93 0.42 1.38 16 9 N -0.87 -43.52 11.34 21.67 0.25 -43.28 16 10 Si 0.97 38.43 29.61 68.60 2.03 40.46 16 11 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 12 H -0.27 -10.47 7.11 99.48 0.71 -9.77 16 13 H -0.27 -10.50 7.11 99.48 0.71 -9.79 16 14 C 0.53 27.06 7.08 86.63 0.61 27.68 16 15 O -0.63 -34.99 16.78 -4.13 -0.07 -35.06 16 16 C -0.22 -10.20 4.62 -18.74 -0.09 -10.28 16 17 C 0.04 1.46 7.59 45.17 0.34 1.81 16 18 C -0.07 -2.24 10.49 71.24 0.75 -1.49 16 19 N -0.38 -14.86 12.01 -44.74 -0.54 -15.39 16 20 O 0.09 3.50 11.06 76.76 0.85 4.35 16 21 C 0.02 0.67 6.06 25.50 0.15 0.83 16 22 C -0.01 -0.26 3.33 -11.54 -0.04 -0.30 16 23 C -0.14 -4.12 9.17 71.98 0.66 -3.46 16 24 C -0.14 -3.70 9.17 71.98 0.66 -3.04 16 25 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 26 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 27 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 28 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 29 H 0.06 1.84 8.14 -2.39 -0.02 1.83 16 30 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.06 2.26 8.14 -2.38 -0.02 2.24 16 32 H 0.10 4.94 5.35 -2.39 -0.01 4.93 16 33 H 0.03 1.71 7.59 -2.39 -0.02 1.69 16 34 H 0.28 12.87 8.31 -92.70 -0.77 12.09 16 35 H 0.09 2.74 8.14 -2.39 -0.02 2.72 16 36 H 0.10 2.70 8.14 -2.38 -0.02 2.68 16 37 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 38 H 0.07 2.97 7.71 -2.39 -0.02 2.95 16 39 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 40 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 41 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 42 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 43 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 44 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 Total: -1.00 -61.45 368.60 7.55 -53.91 By element: Atomic # 1 Polarization: 25.52 SS G_CDS: 0.97 Total: 26.49 kcal Atomic # 6 Polarization: -14.29 SS G_CDS: 5.69 Total: -8.60 kcal Atomic # 7 Polarization: -79.61 SS G_CDS: -1.92 Total: -81.54 kcal Atomic # 8 Polarization: -31.50 SS G_CDS: 0.78 Total: -30.72 kcal Atomic # 14 Polarization: 38.43 SS G_CDS: 2.03 Total: 40.46 kcal Total: -61.45 7.55 -53.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001197353319.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.849 kcal (2) G-P(sol) polarization free energy of solvation -61.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds