Wall clock time and date at job start Tue Mar 31 2020 07:03:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 C 1.53007 * 109.47024 * 107.09352 * 3 2 1 5 5 C 1.53002 * 109.47117 * 179.97438 * 4 3 2 6 6 C 1.50701 * 109.47269 * 180.02562 * 5 4 3 7 7 O 1.21284 * 119.99771 * 359.97438 * 6 5 4 8 8 N 1.34771 * 120.00106 * 180.02562 * 6 5 4 9 9 C 1.47508 * 118.75880 * 359.97438 * 8 6 5 10 10 C 1.53569 * 111.02711 * 138.37175 * 9 8 6 11 11 C 1.51537 * 109.58625 * 320.02477 * 10 9 8 12 12 O 1.42155 * 108.76449 * 91.39718 * 11 10 9 13 13 C 1.38020 * 119.43664 * 272.78195 * 12 11 10 14 14 H 1.09002 * 109.47136 * 303.42481 * 13 12 11 15 15 C 1.52999 * 109.47028 * 183.42281 * 13 12 11 16 16 N 1.46506 * 109.46684 * 65.00021 * 15 13 12 17 17 C 1.36938 * 119.99589 * 180.02562 * 16 15 13 18 18 H 1.07999 * 120.00325 * 359.97438 * 17 16 15 19 19 C 1.38815 * 119.99817 * 180.02562 * 17 16 15 20 20 N 1.31621 * 119.99673 * 359.71804 * 19 17 16 21 21 Si 1.86795 * 120.00115 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47163 * 59.99668 * 21 19 17 23 23 H 1.48505 * 109.47234 * 179.97438 * 21 19 17 24 24 H 1.48492 * 109.47124 * 299.99692 * 21 19 17 25 25 C 1.45122 * 118.75951 * 179.97438 * 8 6 5 26 26 H 4.44641 * 5.63408 * 180.02562 * 4 1 2 27 27 H 1.09001 * 109.47360 * 347.09758 * 3 2 1 28 28 H 1.09003 * 109.47473 * 227.09114 * 3 2 1 29 29 H 1.09001 * 109.46721 * 60.00015 * 4 3 2 30 30 H 1.09000 * 109.47462 * 299.99855 * 4 3 2 31 31 H 1.09007 * 109.46796 * 60.00209 * 5 4 3 32 32 H 1.09000 * 109.47133 * 300.00421 * 5 4 3 33 33 H 1.08999 * 109.16253 * 17.98094 * 9 8 6 34 34 H 1.08990 * 109.12678 * 258.74591 * 9 8 6 35 35 H 1.09003 * 109.45551 * 199.98754 * 10 9 8 36 36 H 1.09006 * 109.43577 * 80.04190 * 10 9 8 37 37 H 1.09008 * 109.58402 * 331.61647 * 11 10 9 38 38 H 1.08994 * 109.59418 * 211.18033 * 11 10 9 39 39 H 1.09000 * 109.47486 * 304.99956 * 15 13 12 40 40 H 1.09001 * 109.47362 * 184.99233 * 15 13 12 41 41 H 0.96999 * 120.00080 * 359.97438 * 16 15 13 42 42 H 0.97000 * 120.00043 * 180.02562 * 20 19 17 43 43 H 1.08997 * 109.46109 * 149.26617 * 25 8 6 44 44 H 1.09003 * 109.45866 * 29.30797 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1558 0.4249 -1.3788 5 6 4.6858 0.4262 -1.3787 6 6 5.1880 0.8447 -2.7366 7 8 4.3997 1.1148 -3.6178 8 7 6.5129 0.9178 -2.9719 9 6 7.4471 0.5827 -1.8807 10 6 8.6258 -0.2528 -2.4014 11 6 8.1249 -1.2607 -3.4161 12 8 8.2026 -0.6819 -4.7122 13 6 7.1465 0.0718 -5.1829 14 1 6.2350 -0.5254 -5.1593 15 6 7.4329 0.5089 -6.6209 16 7 7.4845 -0.6705 -7.4886 17 6 7.7298 -0.5248 -8.8279 18 1 7.8848 0.4594 -9.2446 19 6 7.7782 -1.6422 -9.6501 20 7 7.5939 -2.8420 -9.1414 21 14 8.1121 -1.4436 -11.4772 22 1 9.4352 -0.7977 -11.6713 23 1 8.1131 -2.7783 -12.1283 24 1 7.0542 -0.5969 -12.0846 25 6 6.9668 1.3232 -4.2894 26 1 -1.0500 0.0002 0.0001 27 1 3.0098 -1.0009 0.2295 28 1 3.0091 0.7005 0.7527 29 1 2.7919 1.4264 -1.6083 30 1 2.7928 -0.2749 -2.1316 31 1 5.0499 -0.5752 -1.1490 32 1 5.0485 1.1262 -0.6260 33 1 6.9160 0.0149 -1.1167 34 1 7.8283 1.5043 -1.4412 35 1 9.0944 -0.7779 -1.5690 36 1 9.3561 0.4048 -2.8730 37 1 7.0899 -1.5202 -3.1932 38 1 8.7448 -2.1564 -3.3782 39 1 8.3895 1.0299 -6.6587 40 1 6.6417 1.1765 -6.9621 41 1 7.3457 -1.5545 -7.1142 42 1 7.6281 -3.6229 -9.7159 43 1 7.9191 1.8458 -4.2005 44 1 6.2288 1.9874 -4.7392 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001200395806.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:33 Heat of formation + Delta-G solvation = -17.544158 kcal Electronic energy + Delta-G solvation = -23843.071839 eV Core-core repulsion = 20376.417717 eV Total energy + Delta-G solvation = -3466.654122 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.61543 -38.58082 -35.89982 -35.62649 -34.55998 -32.93548 -32.46704 -30.88358 -29.39420 -27.87410 -26.56528 -25.03747 -23.14279 -22.00217 -21.64592 -20.91081 -19.08802 -18.38003 -17.32366 -17.08464 -16.52720 -16.35093 -16.24646 -15.43979 -14.90288 -14.70531 -14.33135 -14.07510 -13.89212 -13.61819 -13.20732 -13.07652 -12.89313 -12.70950 -12.51202 -12.24339 -12.01981 -11.92022 -11.53231 -11.33048 -11.23478 -10.95043 -10.77883 -10.73302 -10.47154 -10.34579 -10.24924 -10.03471 -9.77482 -9.62468 -9.38271 -8.79221 -8.53895 -6.81359 -5.66079 -2.94184 2.53284 2.55729 2.60545 2.89570 3.50996 3.54364 3.56005 3.97718 4.07551 4.29641 4.57966 4.64473 4.68401 4.72688 4.77806 4.94181 5.04565 5.14088 5.24653 5.27299 5.28742 5.36590 5.39478 5.46459 5.51714 5.63132 5.66949 5.78477 5.84499 5.86146 5.97605 6.01743 6.04789 6.12492 6.37187 6.52267 6.70122 6.82312 7.22472 7.38512 7.77307 8.03100 8.11691 8.52276 9.63532 10.22040 10.57994 11.56903 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.017331 B = 0.003214 C = 0.002901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1615.203354 B = 8710.451865 C = 9651.048149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.186 4.186 3 C -0.013 4.013 4 C -0.101 4.101 5 C -0.140 4.140 6 C 0.504 3.496 7 O -0.530 6.530 8 N -0.612 5.612 9 C 0.105 3.895 10 C -0.168 4.168 11 C 0.074 3.926 12 O -0.369 6.369 13 C 0.089 3.911 14 H 0.052 0.948 15 C 0.166 3.834 16 N -0.726 5.726 17 C -0.237 4.237 18 H 0.070 0.930 19 C -0.015 4.015 20 N -0.933 5.933 21 Si 0.908 3.092 22 H -0.286 1.286 23 H -0.292 1.292 24 H -0.286 1.286 25 C 0.081 3.919 26 H 0.216 0.784 27 H 0.087 0.913 28 H 0.086 0.914 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.095 0.905 32 H 0.094 0.906 33 H 0.083 0.917 34 H 0.067 0.933 35 H 0.085 0.915 36 H 0.082 0.918 37 H 0.046 0.954 38 H 0.089 0.911 39 H 0.027 0.973 40 H 0.035 0.965 41 H 0.387 0.613 42 H 0.254 0.746 43 H 0.082 0.918 44 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.058 6.670 24.475 25.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.186 4.186 3 C -0.049 4.049 4 C -0.139 4.139 5 C -0.180 4.180 6 C 0.292 3.708 7 O -0.406 6.406 8 N -0.345 5.345 9 C -0.017 4.017 10 C -0.206 4.206 11 C -0.003 4.003 12 O -0.287 6.287 13 C 0.029 3.971 14 H 0.070 0.930 15 C 0.038 3.962 16 N -0.370 5.370 17 C -0.368 4.368 18 H 0.088 0.912 19 C -0.211 4.211 20 N -0.582 5.582 21 Si 0.739 3.261 22 H -0.213 1.213 23 H -0.217 1.217 24 H -0.213 1.213 25 C -0.043 4.043 26 H 0.233 0.767 27 H 0.105 0.895 28 H 0.104 0.896 29 H 0.093 0.907 30 H 0.095 0.905 31 H 0.113 0.887 32 H 0.112 0.888 33 H 0.101 0.899 34 H 0.085 0.915 35 H 0.103 0.897 36 H 0.100 0.900 37 H 0.064 0.936 38 H 0.107 0.893 39 H 0.045 0.955 40 H 0.052 0.948 41 H 0.220 0.780 42 H 0.064 0.936 43 H 0.100 0.900 44 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -4.262 6.872 23.730 25.070 hybrid contribution -0.178 -0.203 -0.571 0.631 sum -4.440 6.669 23.160 24.506 Atomic orbital electron populations 1.24925 0.96029 1.01167 1.00683 1.23088 0.94584 1.00394 1.00545 1.18760 0.84940 1.02856 0.98370 1.21307 0.92924 1.03725 0.95972 1.21733 0.97427 1.03483 0.95336 1.20770 0.82119 0.77568 0.90331 1.90748 1.54706 1.48484 1.46704 1.47976 1.05885 1.67925 1.12740 1.22001 0.91311 0.99536 0.88862 1.22519 0.98101 0.99523 1.00437 1.22107 1.00373 0.95058 0.82796 1.86437 1.42794 1.67612 1.31823 1.22269 0.89952 0.90634 0.94245 0.93047 1.20610 0.98445 0.91542 0.85624 1.42224 1.86340 1.03650 1.04806 1.19191 1.40479 0.92962 0.84196 0.91235 1.24738 1.03001 0.95281 0.98081 1.69669 1.56902 0.97124 1.34511 0.86250 0.78041 0.76441 0.85355 1.21315 1.21744 1.21310 1.22412 1.01057 0.98583 0.82248 0.76698 0.89465 0.89563 0.90694 0.90525 0.88665 0.88775 0.89864 0.91483 0.89697 0.89955 0.93562 0.89315 0.95520 0.94789 0.77967 0.93577 0.89983 0.88890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -1.90 19.25 29.55 0.57 -1.33 16 2 C -0.19 -1.80 13.34 -37.12 -0.50 -2.30 16 3 C -0.01 -0.09 5.70 -29.52 -0.17 -0.26 16 4 C -0.10 -0.94 4.46 -26.73 -0.12 -1.06 16 5 C -0.14 -1.12 4.04 -27.88 -0.11 -1.23 16 6 C 0.50 6.45 7.63 -10.99 -0.08 6.36 16 7 O -0.53 -9.21 15.41 5.55 0.09 -9.13 16 8 N -0.61 -7.26 2.19 -172.48 -0.38 -7.64 16 9 C 0.11 0.84 6.00 -3.20 -0.02 0.82 16 10 C -0.17 -1.52 5.78 -27.18 -0.16 -1.67 16 11 C 0.07 0.95 6.37 36.42 0.23 1.18 16 12 O -0.37 -6.60 9.38 -26.55 -0.25 -6.84 16 13 C 0.09 1.62 2.68 -25.78 -0.07 1.55 16 14 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 15 C 0.17 3.62 5.92 -4.04 -0.02 3.59 16 16 N -0.73 -19.80 5.54 -59.90 -0.33 -20.13 16 17 C -0.24 -6.98 9.99 -15.06 -0.15 -7.13 16 18 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 19 C -0.02 -0.46 5.50 -17.43 -0.10 -0.55 16 20 N -0.93 -29.45 13.06 55.49 0.72 -28.72 16 21 Si 0.91 23.21 29.55 -169.99 -5.02 18.19 16 22 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 23 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 24 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 25 C 0.08 1.17 4.86 -3.83 -0.02 1.15 16 26 H 0.22 1.23 7.80 -54.09 -0.42 0.81 16 27 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.07 0.79 8.10 -51.93 -0.42 0.37 16 30 H 0.08 0.87 8.10 -51.93 -0.42 0.45 16 31 H 0.10 0.59 7.41 -51.92 -0.38 0.20 16 32 H 0.09 0.51 8.04 -51.93 -0.42 0.09 16 33 H 0.08 0.46 5.88 -51.93 -0.31 0.15 16 34 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.08 0.84 8.01 -51.93 -0.42 0.43 16 37 H 0.05 0.60 7.40 -51.92 -0.38 0.21 16 38 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 39 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.39 11.21 7.65 -40.82 -0.31 10.90 16 42 H 0.25 7.73 8.31 -40.82 -0.34 7.39 16 43 H 0.08 1.07 8.11 -51.93 -0.42 0.65 16 44 H 0.09 1.45 7.27 -51.93 -0.38 1.07 16 LS Contribution 363.04 15.07 5.47 5.47 Total: -1.00 -36.37 363.04 -7.62 -44.00 By element: Atomic # 1 Polarization: 12.90 SS G_CDS: -7.21 Total: 5.69 kcal Atomic # 6 Polarization: -0.17 SS G_CDS: -0.71 Total: -0.88 kcal Atomic # 7 Polarization: -56.51 SS G_CDS: 0.01 Total: -56.50 kcal Atomic # 8 Polarization: -15.81 SS G_CDS: -0.16 Total: -15.97 kcal Atomic # 14 Polarization: 23.21 SS G_CDS: -5.02 Total: 18.19 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -36.37 -7.62 -44.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200395806.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.451 kcal (2) G-P(sol) polarization free energy of solvation -36.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds