Wall clock time and date at job start Tue Mar 31 2020 07:03:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 C 1.53007 * 109.47024 * 107.09352 * 3 2 1 5 5 C 1.53002 * 109.47117 * 179.97438 * 4 3 2 6 6 C 1.50701 * 109.47269 * 180.02562 * 5 4 3 7 7 O 1.21284 * 119.99771 * 359.97438 * 6 5 4 8 8 N 1.34771 * 120.00106 * 180.02562 * 6 5 4 9 9 C 1.47508 * 118.75880 * 359.97438 * 8 6 5 10 10 C 1.53569 * 111.02711 * 138.37175 * 9 8 6 11 11 C 1.51537 * 109.58625 * 320.02477 * 10 9 8 12 12 O 1.42155 * 108.76449 * 91.39718 * 11 10 9 13 13 C 1.38020 * 119.43664 * 272.78195 * 12 11 10 14 14 H 1.09002 * 109.47136 * 303.42481 * 13 12 11 15 15 C 1.52999 * 109.47028 * 183.42281 * 13 12 11 16 16 N 1.46506 * 109.46684 * 65.00021 * 15 13 12 17 17 C 1.36938 * 119.99589 * 180.02562 * 16 15 13 18 18 H 1.07999 * 120.00325 * 359.97438 * 17 16 15 19 19 C 1.38815 * 119.99817 * 180.02562 * 17 16 15 20 20 N 1.31621 * 119.99673 * 359.71804 * 19 17 16 21 21 Si 1.86795 * 120.00115 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47163 * 59.99668 * 21 19 17 23 23 H 1.48505 * 109.47234 * 179.97438 * 21 19 17 24 24 H 1.48492 * 109.47124 * 299.99692 * 21 19 17 25 25 C 1.45122 * 118.75951 * 179.97438 * 8 6 5 26 26 H 4.44641 * 5.63408 * 180.02562 * 4 1 2 27 27 H 1.09001 * 109.47360 * 347.09758 * 3 2 1 28 28 H 1.09003 * 109.47473 * 227.09114 * 3 2 1 29 29 H 1.09001 * 109.46721 * 60.00015 * 4 3 2 30 30 H 1.09000 * 109.47462 * 299.99855 * 4 3 2 31 31 H 1.09007 * 109.46796 * 60.00209 * 5 4 3 32 32 H 1.09000 * 109.47133 * 300.00421 * 5 4 3 33 33 H 1.08999 * 109.16253 * 17.98094 * 9 8 6 34 34 H 1.08990 * 109.12678 * 258.74591 * 9 8 6 35 35 H 1.09003 * 109.45551 * 199.98754 * 10 9 8 36 36 H 1.09006 * 109.43577 * 80.04190 * 10 9 8 37 37 H 1.09008 * 109.58402 * 331.61647 * 11 10 9 38 38 H 1.08994 * 109.59418 * 211.18033 * 11 10 9 39 39 H 1.09000 * 109.47486 * 304.99956 * 15 13 12 40 40 H 1.09001 * 109.47362 * 184.99233 * 15 13 12 41 41 H 0.96999 * 120.00080 * 359.97438 * 16 15 13 42 42 H 0.97000 * 120.00043 * 180.02562 * 20 19 17 43 43 H 1.08997 * 109.46109 * 149.26617 * 25 8 6 44 44 H 1.09003 * 109.45866 * 29.30797 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1558 0.4249 -1.3788 5 6 4.6858 0.4262 -1.3787 6 6 5.1880 0.8447 -2.7366 7 8 4.3997 1.1148 -3.6178 8 7 6.5129 0.9178 -2.9719 9 6 7.4471 0.5827 -1.8807 10 6 8.6258 -0.2528 -2.4014 11 6 8.1249 -1.2607 -3.4161 12 8 8.2026 -0.6819 -4.7122 13 6 7.1465 0.0718 -5.1829 14 1 6.2350 -0.5254 -5.1593 15 6 7.4329 0.5089 -6.6209 16 7 7.4845 -0.6705 -7.4886 17 6 7.7298 -0.5248 -8.8279 18 1 7.8848 0.4594 -9.2446 19 6 7.7782 -1.6422 -9.6501 20 7 7.5939 -2.8420 -9.1414 21 14 8.1121 -1.4436 -11.4772 22 1 9.4352 -0.7977 -11.6713 23 1 8.1131 -2.7783 -12.1283 24 1 7.0542 -0.5969 -12.0846 25 6 6.9668 1.3232 -4.2894 26 1 -1.0500 0.0002 0.0001 27 1 3.0098 -1.0009 0.2295 28 1 3.0091 0.7005 0.7527 29 1 2.7919 1.4264 -1.6083 30 1 2.7928 -0.2749 -2.1316 31 1 5.0499 -0.5752 -1.1490 32 1 5.0485 1.1262 -0.6260 33 1 6.9160 0.0149 -1.1167 34 1 7.8283 1.5043 -1.4412 35 1 9.0944 -0.7779 -1.5690 36 1 9.3561 0.4048 -2.8730 37 1 7.0899 -1.5202 -3.1932 38 1 8.7448 -2.1564 -3.3782 39 1 8.3895 1.0299 -6.6587 40 1 6.6417 1.1765 -6.9621 41 1 7.3457 -1.5545 -7.1142 42 1 7.6281 -3.6229 -9.7159 43 1 7.9191 1.8458 -4.2005 44 1 6.2288 1.9874 -4.7392 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001200395806.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:32 Heat of formation + Delta-G solvation = -42.277493 kcal Electronic energy + Delta-G solvation = -23844.144357 eV Core-core repulsion = 20376.417717 eV Total energy + Delta-G solvation = -3467.726640 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.65856 -39.77133 -36.91570 -36.57047 -36.21711 -34.34415 -33.25159 -32.65690 -30.57984 -28.99462 -27.52830 -26.56620 -24.70705 -23.23959 -22.53666 -22.29272 -19.95436 -19.27995 -19.08649 -18.17054 -17.73435 -17.53110 -17.15957 -16.52426 -16.48047 -15.77694 -15.62760 -15.16297 -14.89425 -14.85641 -14.74550 -14.42796 -13.94571 -13.80981 -13.51811 -13.38861 -13.20718 -13.09219 -12.73900 -12.71693 -12.49949 -12.26779 -12.12615 -12.02047 -11.89887 -11.81569 -11.46278 -11.16314 -10.98498 -10.96454 -10.80966 -10.54401 -9.62513 -9.03609 -7.95524 -5.25780 1.45266 1.50337 1.56136 1.59771 1.81676 1.92873 2.03472 2.55404 2.72988 3.37589 3.46221 3.56311 3.64433 3.89092 3.98851 4.05638 4.08711 4.10605 4.16061 4.31433 4.35937 4.43670 4.51380 4.58059 4.63474 4.66583 4.71104 4.78689 4.80959 4.87841 4.91675 5.08567 5.15132 5.19012 5.21631 5.22594 5.32869 5.45156 5.55964 6.24787 6.32570 6.72571 6.75804 7.16864 7.30772 8.04573 8.30176 9.28302 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.017331 B = 0.003214 C = 0.002901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1615.203354 B = 8710.451865 C = 9651.048149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.216 4.216 3 C -0.008 4.008 4 C -0.097 4.097 5 C -0.128 4.128 6 C 0.494 3.506 7 O -0.590 6.590 8 N -0.611 5.611 9 C 0.099 3.901 10 C -0.157 4.157 11 C 0.062 3.938 12 O -0.399 6.399 13 C 0.106 3.894 14 H 0.017 0.983 15 C 0.162 3.838 16 N -0.741 5.741 17 C -0.250 4.250 18 H 0.078 0.922 19 C -0.079 4.079 20 N -0.971 5.971 21 Si 0.981 3.019 22 H -0.274 1.274 23 H -0.293 1.293 24 H -0.277 1.277 25 C 0.094 3.906 26 H 0.238 0.762 27 H 0.106 0.894 28 H 0.113 0.887 29 H 0.053 0.947 30 H 0.043 0.957 31 H 0.124 0.876 32 H 0.135 0.865 33 H 0.119 0.881 34 H 0.095 0.905 35 H 0.123 0.877 36 H 0.071 0.929 37 H 0.043 0.957 38 H 0.094 0.906 39 H 0.033 0.967 40 H 0.033 0.967 41 H 0.373 0.627 42 H 0.252 0.748 43 H 0.101 0.899 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.872 7.431 27.077 28.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.216 4.216 3 C -0.044 4.044 4 C -0.135 4.135 5 C -0.167 4.167 6 C 0.284 3.716 7 O -0.470 6.470 8 N -0.343 5.343 9 C -0.021 4.021 10 C -0.195 4.195 11 C -0.014 4.014 12 O -0.318 6.318 13 C 0.046 3.954 14 H 0.035 0.965 15 C 0.035 3.965 16 N -0.383 5.383 17 C -0.382 4.382 18 H 0.096 0.904 19 C -0.271 4.271 20 N -0.622 5.622 21 Si 0.809 3.191 22 H -0.200 1.200 23 H -0.219 1.219 24 H -0.203 1.203 25 C -0.031 4.031 26 H 0.254 0.746 27 H 0.125 0.875 28 H 0.131 0.869 29 H 0.072 0.928 30 H 0.062 0.938 31 H 0.142 0.858 32 H 0.153 0.847 33 H 0.137 0.863 34 H 0.113 0.887 35 H 0.141 0.859 36 H 0.090 0.910 37 H 0.062 0.938 38 H 0.112 0.888 39 H 0.051 0.949 40 H 0.051 0.949 41 H 0.204 0.796 42 H 0.061 0.939 43 H 0.120 0.880 44 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -3.046 7.669 26.391 27.650 hybrid contribution -0.552 -0.454 -1.327 1.508 sum -3.598 7.215 25.063 26.328 Atomic orbital electron populations 1.25715 0.97169 1.00967 1.00237 1.23898 0.95971 1.00764 1.01013 1.18854 0.83576 1.04603 0.97364 1.21199 0.94163 1.01643 0.96524 1.21792 0.96065 1.05929 0.92937 1.21740 0.81876 0.76336 0.91632 1.90726 1.56243 1.51114 1.48948 1.48121 1.06550 1.67213 1.12401 1.22397 0.90549 1.01237 0.87936 1.22444 0.98331 0.98548 1.00208 1.22438 1.00706 0.96491 0.81719 1.86354 1.42410 1.68151 1.34871 1.21848 0.88432 0.91940 0.93165 0.96537 1.20757 0.98402 0.89907 0.87441 1.42433 1.86372 1.04526 1.04996 1.19655 1.39695 0.93416 0.85414 0.90434 1.25679 1.03404 0.94941 1.03032 1.69849 1.58400 0.97845 1.36100 0.85105 0.78361 0.76323 0.79313 1.20038 1.21897 1.20322 1.22050 1.01482 0.96220 0.83349 0.74574 0.87550 0.86897 0.92805 0.93796 0.85803 0.84699 0.86332 0.88713 0.85912 0.91012 0.93832 0.88841 0.94906 0.94948 0.79573 0.93948 0.88050 0.90659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -3.91 19.25 74.32 1.43 -2.48 16 2 C -0.22 -4.01 13.34 31.12 0.42 -3.59 16 3 C -0.01 -0.09 5.70 28.79 0.16 0.07 16 4 C -0.10 -1.71 4.46 30.60 0.14 -1.58 16 5 C -0.13 -1.66 4.04 29.85 0.12 -1.54 16 6 C 0.49 12.18 7.63 87.66 0.67 12.85 16 7 O -0.59 -21.43 15.41 -3.04 -0.05 -21.47 16 8 N -0.61 -13.41 2.19 -817.98 -1.79 -15.20 16 9 C 0.10 1.14 6.00 86.38 0.52 1.65 16 10 C -0.16 -2.28 5.78 30.31 0.18 -2.11 16 11 C 0.06 1.53 6.37 71.50 0.46 1.99 16 12 O -0.40 -14.46 9.38 -117.93 -1.11 -15.57 16 13 C 0.11 4.02 2.68 31.21 0.08 4.10 16 14 H 0.02 0.73 8.14 -2.39 -0.02 0.72 16 15 C 0.16 7.33 5.92 86.38 0.51 7.84 16 16 N -0.74 -41.97 5.54 -343.44 -1.90 -43.88 16 17 C -0.25 -15.05 9.99 84.03 0.84 -14.21 16 18 H 0.08 4.42 7.83 -2.91 -0.02 4.40 16 19 C -0.08 -4.79 5.50 84.86 0.47 -4.32 16 20 N -0.97 -62.92 13.06 21.65 0.28 -62.64 16 21 Si 0.98 48.30 29.55 68.60 2.03 50.33 16 22 H -0.27 -12.89 7.11 99.48 0.71 -12.18 16 23 H -0.29 -14.37 7.11 99.48 0.71 -13.66 16 24 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 25 C 0.09 2.71 4.86 87.25 0.42 3.13 16 26 H 0.24 2.51 7.80 -4.42 -0.03 2.48 16 27 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 28 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.05 1.16 8.10 -2.39 -0.02 1.14 16 30 H 0.04 1.04 8.10 -2.39 -0.02 1.02 16 31 H 0.12 0.96 7.41 -2.38 -0.02 0.94 16 32 H 0.14 0.72 8.04 -2.39 -0.02 0.70 16 33 H 0.12 0.57 5.88 -2.39 -0.01 0.55 16 34 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 35 H 0.12 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.07 1.25 8.01 -2.38 -0.02 1.23 16 37 H 0.04 1.08 7.40 -2.38 -0.02 1.06 16 38 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 39 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 40 H 0.03 1.47 8.14 -2.39 -0.02 1.46 16 41 H 0.37 22.72 7.65 -92.71 -0.71 22.01 16 42 H 0.25 15.68 8.31 -92.71 -0.77 14.91 16 43 H 0.10 2.51 8.11 -2.39 -0.02 2.49 16 44 H 0.08 2.44 7.27 -2.39 -0.02 2.42 16 Total: -1.00 -84.70 363.04 4.14 -80.56 By element: Atomic # 1 Polarization: 25.79 SS G_CDS: 0.26 Total: 26.05 kcal Atomic # 6 Polarization: -4.60 SS G_CDS: 6.41 Total: 1.82 kcal Atomic # 7 Polarization: -118.31 SS G_CDS: -3.41 Total: -121.72 kcal Atomic # 8 Polarization: -35.89 SS G_CDS: -1.15 Total: -37.04 kcal Atomic # 14 Polarization: 48.30 SS G_CDS: 2.03 Total: 50.33 kcal Total: -84.70 4.14 -80.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200395806.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.287 kcal (2) G-P(sol) polarization free energy of solvation -84.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds