Wall clock time and date at job start Tue Mar 31 2020 07:03:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17406 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 C 1.52999 * 109.47190 * 93.39125 * 3 2 1 5 5 C 1.52999 * 109.47236 * 179.97438 * 4 3 2 6 6 C 1.50703 * 109.47057 * 179.97438 * 5 4 3 7 7 O 1.21281 * 120.00083 * 0.02562 * 6 5 4 8 8 N 1.34777 * 119.99771 * 179.97438 * 6 5 4 9 9 C 1.47514 * 118.75675 * 0.02562 * 8 6 5 10 10 C 1.53574 * 111.02879 * 221.60633 * 9 8 6 11 11 C 1.51538 * 109.57840 * 39.98200 * 10 9 8 12 12 O 1.42153 * 108.74862 * 268.59490 * 11 10 9 13 13 C 1.38021 * 119.44236 * 87.23498 * 12 11 10 14 14 H 1.09006 * 109.46428 * 56.56898 * 13 12 11 15 15 C 1.52992 * 109.47213 * 176.56282 * 13 12 11 16 16 N 1.46498 * 109.47364 * 300.00422 * 15 13 12 17 17 C 1.36935 * 120.00239 * 179.97438 * 16 15 13 18 18 H 1.08004 * 120.00069 * 0.02562 * 17 16 15 19 19 C 1.38811 * 120.00368 * 180.02562 * 17 16 15 20 20 N 1.31624 * 119.99540 * 359.72375 * 19 17 16 21 21 Si 1.86800 * 120.00451 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47364 * 179.72253 * 21 19 17 23 23 H 1.48508 * 109.46883 * 299.72375 * 21 19 17 24 24 H 1.48497 * 109.46870 * 59.72186 * 21 19 17 25 25 C 1.45124 * 118.75774 * 179.97438 * 8 6 5 26 26 H 4.44653 * 5.63350 * 180.02562 * 4 1 2 27 27 H 1.09002 * 109.47227 * 333.38915 * 3 2 1 28 28 H 1.09004 * 109.47098 * 213.39106 * 3 2 1 29 29 H 1.09002 * 109.47207 * 59.99778 * 4 3 2 30 30 H 1.09004 * 109.47084 * 299.99989 * 4 3 2 31 31 H 1.09002 * 109.47125 * 59.99824 * 5 4 3 32 32 H 1.09004 * 109.47153 * 300.00043 * 5 4 3 33 33 H 1.08999 * 109.16722 * 342.00661 * 9 8 6 34 34 H 1.09000 * 109.16522 * 101.21293 * 9 8 6 35 35 H 1.08999 * 109.45151 * 160.01051 * 10 9 8 36 36 H 1.08997 * 109.45691 * 279.94481 * 10 9 8 37 37 H 1.08997 * 109.59302 * 28.37553 * 11 10 9 38 38 H 1.08991 * 109.58960 * 148.81543 * 11 10 9 39 39 H 1.09001 * 109.47602 * 180.02562 * 15 13 12 40 40 H 1.09001 * 109.46922 * 60.00440 * 15 13 12 41 41 H 0.97004 * 119.99747 * 0.02562 * 16 15 13 42 42 H 0.97000 * 120.00481 * 0.27542 * 20 19 17 43 43 H 1.09003 * 109.45812 * 330.72063 * 25 8 6 44 44 H 1.08996 * 109.44614 * 210.75171 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1560 0.0862 -1.4400 5 6 4.6860 0.0875 -1.4399 6 6 5.1883 0.1712 -2.8583 7 8 4.4001 0.2249 -3.7786 8 7 6.5134 0.1873 -3.1041 9 6 7.4474 0.1212 -1.9643 10 6 8.6248 1.0876 -2.1599 11 6 8.1221 2.3859 -2.7584 12 8 8.2004 2.2965 -4.1749 13 6 7.1453 1.7534 -4.8798 14 1 6.2330 2.3036 -4.6493 15 6 7.4321 1.8469 -6.3797 16 7 7.6004 3.2522 -6.7581 17 6 7.8671 3.5836 -8.0596 18 1 7.9531 2.8091 -8.8074 19 6 8.0272 4.9151 -8.4180 20 7 7.9170 5.8594 -7.5077 21 14 8.3903 5.3673 -10.1937 22 1 8.5091 6.8426 -10.3145 23 1 9.6646 4.7319 -10.6156 24 1 7.2861 4.8868 -11.0626 25 6 6.9673 0.2678 -4.4801 26 1 -1.0500 0.0002 0.0000 27 1 3.0098 -0.9180 0.4603 28 1 3.0090 0.8589 0.5656 29 1 2.7923 1.0049 -1.9003 30 1 2.7931 -0.7720 -2.0055 31 1 5.0501 -0.8309 -0.9795 32 1 5.0486 0.9460 -0.8744 33 1 6.9157 0.3853 -1.0501 34 1 7.8302 -0.8954 -1.8737 35 1 9.0927 1.2894 -1.1963 36 1 9.3562 0.6377 -2.8311 37 1 7.0868 2.5496 -2.4592 38 1 8.7406 3.2127 -2.4096 39 1 6.5987 1.4185 -6.9365 40 1 8.3444 1.2968 -6.6102 41 1 7.5236 3.9478 -6.0864 42 1 7.7281 5.6247 -6.5857 43 1 6.2301 -0.1988 -5.1336 44 1 7.9205 -0.2516 -4.5788 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001200395807.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:36 Heat of formation + Delta-G solvation = -17.570767 kcal Electronic energy + Delta-G solvation = -23890.552771 eV Core-core repulsion = 20423.897496 eV Total energy + Delta-G solvation = -3466.655276 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.68035 -38.66152 -35.94534 -35.71550 -34.76396 -33.09150 -32.52155 -30.86090 -29.38079 -27.81030 -26.59939 -24.87131 -23.10820 -22.14707 -21.71511 -21.02576 -19.14564 -18.41911 -17.37372 -17.20860 -16.62259 -16.39009 -16.35293 -15.61115 -14.97454 -14.84133 -14.21606 -14.09175 -13.92118 -13.65075 -13.50938 -13.11793 -13.02099 -12.84360 -12.59571 -12.39792 -12.02851 -11.98805 -11.53905 -11.39241 -11.28997 -11.03114 -10.65431 -10.50447 -10.49330 -10.37571 -10.31269 -9.93124 -9.83636 -9.47019 -9.12186 -8.79995 -8.59430 -6.88913 -6.00573 -2.98526 2.48579 2.51544 2.57676 2.83899 3.57546 3.62105 3.79178 3.89060 4.04111 4.24655 4.52504 4.60529 4.67221 4.72244 4.76163 4.88778 5.00074 5.09674 5.19243 5.20391 5.24878 5.29667 5.32884 5.40375 5.46115 5.55659 5.70665 5.75121 5.78877 5.80452 5.90333 5.93371 6.00077 6.03895 6.17128 6.45437 6.61922 6.73662 7.16534 7.35687 7.88095 7.94452 8.05755 8.86795 9.34577 10.21126 10.37233 11.48545 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.018158 B = 0.003176 C = 0.002893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.641451 B = 8812.711520 C = 9677.538534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.187 4.187 3 C -0.013 4.013 4 C -0.101 4.101 5 C -0.140 4.140 6 C 0.504 3.496 7 O -0.531 6.531 8 N -0.612 5.612 9 C 0.105 3.895 10 C -0.167 4.167 11 C 0.073 3.927 12 O -0.370 6.370 13 C 0.088 3.912 14 H 0.050 0.950 15 C 0.172 3.828 16 N -0.737 5.737 17 C -0.329 4.329 18 H 0.064 0.936 19 C -0.047 4.047 20 N -0.945 5.945 21 Si 1.081 2.919 22 H -0.285 1.285 23 H -0.296 1.296 24 H -0.296 1.296 25 C 0.081 3.919 26 H 0.216 0.784 27 H 0.086 0.914 28 H 0.087 0.913 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.094 0.906 32 H 0.095 0.905 33 H 0.084 0.916 34 H 0.068 0.932 35 H 0.085 0.915 36 H 0.082 0.918 37 H 0.046 0.954 38 H 0.089 0.911 39 H 0.035 0.965 40 H 0.027 0.973 41 H 0.370 0.630 42 H 0.255 0.745 43 H 0.093 0.907 44 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.884 -15.175 20.230 25.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.187 4.187 3 C -0.049 4.049 4 C -0.139 4.139 5 C -0.180 4.180 6 C 0.292 3.708 7 O -0.407 6.407 8 N -0.345 5.345 9 C -0.017 4.017 10 C -0.206 4.206 11 C -0.004 4.004 12 O -0.288 6.288 13 C 0.028 3.972 14 H 0.067 0.933 15 C 0.044 3.956 16 N -0.382 5.382 17 C -0.460 4.460 18 H 0.082 0.918 19 C -0.245 4.245 20 N -0.591 5.591 21 Si 0.912 3.088 22 H -0.211 1.211 23 H -0.223 1.223 24 H -0.223 1.223 25 C -0.042 4.042 26 H 0.233 0.767 27 H 0.105 0.895 28 H 0.105 0.895 29 H 0.094 0.906 30 H 0.093 0.907 31 H 0.113 0.887 32 H 0.113 0.887 33 H 0.102 0.898 34 H 0.086 0.914 35 H 0.104 0.896 36 H 0.101 0.899 37 H 0.064 0.936 38 H 0.107 0.893 39 H 0.053 0.947 40 H 0.045 0.955 41 H 0.204 0.796 42 H 0.066 0.934 43 H 0.111 0.889 44 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -4.825 -14.005 18.415 23.633 hybrid contribution -0.622 -1.336 1.551 2.140 sum -5.447 -15.341 19.966 25.761 Atomic orbital electron populations 1.24932 0.96031 1.01176 1.00597 1.23084 0.94577 1.00413 1.00595 1.18756 0.84959 1.03260 0.97937 1.21305 0.92885 1.04570 0.95163 1.21735 0.97459 1.04292 0.94493 1.20787 0.82095 0.76192 0.91702 1.90745 1.54721 1.48734 1.46493 1.47981 1.05912 1.73413 1.07234 1.22007 0.91297 0.99985 0.88431 1.22511 0.98133 0.97198 1.02721 1.22122 1.00360 0.96330 0.81569 1.86434 1.42884 1.81710 1.17737 1.22293 0.89834 0.91402 0.93669 0.93254 1.20547 0.98344 0.88800 0.87944 1.42205 1.87270 1.00917 1.07854 1.20035 1.45695 0.94478 0.85771 0.91817 1.25776 1.00846 0.91308 1.06528 1.70851 1.52181 1.33580 1.02496 0.83228 0.75752 0.75960 0.73827 1.21075 1.22317 1.22314 1.22400 1.01117 0.98790 0.81909 0.76678 0.89543 0.89469 0.90567 0.90670 0.88725 0.88664 0.89818 0.91414 0.89616 0.89927 0.93559 0.89273 0.94728 0.95541 0.79635 0.93353 0.88866 0.89915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -1.87 19.25 29.55 0.57 -1.30 16 2 C -0.19 -1.79 13.34 -37.12 -0.50 -2.28 16 3 C -0.01 -0.09 5.70 -29.52 -0.17 -0.26 16 4 C -0.10 -0.92 4.46 -26.73 -0.12 -1.04 16 5 C -0.14 -1.10 4.04 -27.88 -0.11 -1.22 16 6 C 0.50 6.39 7.63 -10.98 -0.08 6.31 16 7 O -0.53 -9.15 15.41 5.56 0.09 -9.06 16 8 N -0.61 -7.23 2.19 -172.42 -0.38 -7.60 16 9 C 0.11 0.83 6.00 -3.19 -0.02 0.81 16 10 C -0.17 -1.51 5.79 -27.17 -0.16 -1.67 16 11 C 0.07 0.94 6.38 36.42 0.23 1.17 16 12 O -0.37 -6.60 9.18 -26.56 -0.24 -6.84 16 13 C 0.09 1.60 2.74 -25.75 -0.07 1.53 16 14 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 15 C 0.17 3.79 5.95 -4.05 -0.02 3.77 16 16 N -0.74 -20.15 5.49 -59.91 -0.33 -20.48 16 17 C -0.33 -9.84 9.99 -15.06 -0.15 -9.99 16 18 H 0.06 1.86 7.83 -52.48 -0.41 1.45 16 19 C -0.05 -1.44 5.50 -17.43 -0.10 -1.54 16 20 N -0.95 -30.61 13.70 55.49 0.76 -29.85 16 21 Si 1.08 26.98 29.92 -169.99 -5.09 21.89 16 22 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 23 H -0.30 -7.02 7.11 56.52 0.40 -6.62 16 24 H -0.30 -7.04 7.11 56.52 0.40 -6.64 16 25 C 0.08 1.18 4.87 -3.80 -0.02 1.16 16 26 H 0.22 1.21 7.80 -54.09 -0.42 0.78 16 27 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.08 0.85 8.10 -51.93 -0.42 0.43 16 30 H 0.07 0.79 8.10 -51.93 -0.42 0.37 16 31 H 0.09 0.51 8.04 -51.93 -0.42 0.09 16 32 H 0.10 0.58 7.41 -51.93 -0.38 0.19 16 33 H 0.08 0.45 5.88 -51.93 -0.31 0.15 16 34 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 36 H 0.08 0.86 8.01 -51.93 -0.42 0.44 16 37 H 0.05 0.59 7.40 -51.93 -0.38 0.20 16 38 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 39 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 41 H 0.37 10.48 6.36 -40.82 -0.26 10.22 16 42 H 0.26 8.21 6.77 -40.82 -0.28 7.94 16 43 H 0.09 1.46 7.27 -51.93 -0.38 1.08 16 44 H 0.08 1.09 8.11 -51.93 -0.42 0.67 16 LS Contribution 361.06 15.07 5.44 5.44 Total: -1.00 -37.53 361.06 -7.56 -45.09 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: -7.09 Total: 5.98 kcal Atomic # 6 Polarization: -3.84 SS G_CDS: -0.71 Total: -4.55 kcal Atomic # 7 Polarization: -57.99 SS G_CDS: 0.05 Total: -57.94 kcal Atomic # 8 Polarization: -15.75 SS G_CDS: -0.16 Total: -15.91 kcal Atomic # 14 Polarization: 26.98 SS G_CDS: -5.09 Total: 21.89 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -37.53 -7.56 -45.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200395807.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.517 kcal (2) G-P(sol) polarization free energy of solvation -37.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds