Wall clock time and date at job start Tue Mar 31 2020 07:03:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17406 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 C 1.52999 * 109.47190 * 93.39125 * 3 2 1 5 5 C 1.52999 * 109.47236 * 179.97438 * 4 3 2 6 6 C 1.50703 * 109.47057 * 179.97438 * 5 4 3 7 7 O 1.21281 * 120.00083 * 0.02562 * 6 5 4 8 8 N 1.34777 * 119.99771 * 179.97438 * 6 5 4 9 9 C 1.47514 * 118.75675 * 0.02562 * 8 6 5 10 10 C 1.53574 * 111.02879 * 221.60633 * 9 8 6 11 11 C 1.51538 * 109.57840 * 39.98200 * 10 9 8 12 12 O 1.42153 * 108.74862 * 268.59490 * 11 10 9 13 13 C 1.38021 * 119.44236 * 87.23498 * 12 11 10 14 14 H 1.09006 * 109.46428 * 56.56898 * 13 12 11 15 15 C 1.52992 * 109.47213 * 176.56282 * 13 12 11 16 16 N 1.46498 * 109.47364 * 300.00422 * 15 13 12 17 17 C 1.36935 * 120.00239 * 179.97438 * 16 15 13 18 18 H 1.08004 * 120.00069 * 0.02562 * 17 16 15 19 19 C 1.38811 * 120.00368 * 180.02562 * 17 16 15 20 20 N 1.31624 * 119.99540 * 359.72375 * 19 17 16 21 21 Si 1.86800 * 120.00451 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47364 * 179.72253 * 21 19 17 23 23 H 1.48508 * 109.46883 * 299.72375 * 21 19 17 24 24 H 1.48497 * 109.46870 * 59.72186 * 21 19 17 25 25 C 1.45124 * 118.75774 * 179.97438 * 8 6 5 26 26 H 4.44653 * 5.63350 * 180.02562 * 4 1 2 27 27 H 1.09002 * 109.47227 * 333.38915 * 3 2 1 28 28 H 1.09004 * 109.47098 * 213.39106 * 3 2 1 29 29 H 1.09002 * 109.47207 * 59.99778 * 4 3 2 30 30 H 1.09004 * 109.47084 * 299.99989 * 4 3 2 31 31 H 1.09002 * 109.47125 * 59.99824 * 5 4 3 32 32 H 1.09004 * 109.47153 * 300.00043 * 5 4 3 33 33 H 1.08999 * 109.16722 * 342.00661 * 9 8 6 34 34 H 1.09000 * 109.16522 * 101.21293 * 9 8 6 35 35 H 1.08999 * 109.45151 * 160.01051 * 10 9 8 36 36 H 1.08997 * 109.45691 * 279.94481 * 10 9 8 37 37 H 1.08997 * 109.59302 * 28.37553 * 11 10 9 38 38 H 1.08991 * 109.58960 * 148.81543 * 11 10 9 39 39 H 1.09001 * 109.47602 * 180.02562 * 15 13 12 40 40 H 1.09001 * 109.46922 * 60.00440 * 15 13 12 41 41 H 0.97004 * 119.99747 * 0.02562 * 16 15 13 42 42 H 0.97000 * 120.00481 * 0.27542 * 20 19 17 43 43 H 1.09003 * 109.45812 * 330.72063 * 25 8 6 44 44 H 1.08996 * 109.44614 * 210.75171 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1560 0.0862 -1.4400 5 6 4.6860 0.0875 -1.4399 6 6 5.1883 0.1712 -2.8583 7 8 4.4001 0.2249 -3.7786 8 7 6.5134 0.1873 -3.1041 9 6 7.4474 0.1212 -1.9643 10 6 8.6248 1.0876 -2.1599 11 6 8.1221 2.3859 -2.7584 12 8 8.2004 2.2965 -4.1749 13 6 7.1453 1.7534 -4.8798 14 1 6.2330 2.3036 -4.6493 15 6 7.4321 1.8469 -6.3797 16 7 7.6004 3.2522 -6.7581 17 6 7.8671 3.5836 -8.0596 18 1 7.9531 2.8091 -8.8074 19 6 8.0272 4.9151 -8.4180 20 7 7.9170 5.8594 -7.5077 21 14 8.3903 5.3673 -10.1937 22 1 8.5091 6.8426 -10.3145 23 1 9.6646 4.7319 -10.6156 24 1 7.2861 4.8868 -11.0626 25 6 6.9673 0.2678 -4.4801 26 1 -1.0500 0.0002 0.0000 27 1 3.0098 -0.9180 0.4603 28 1 3.0090 0.8589 0.5656 29 1 2.7923 1.0049 -1.9003 30 1 2.7931 -0.7720 -2.0055 31 1 5.0501 -0.8309 -0.9795 32 1 5.0486 0.9460 -0.8744 33 1 6.9157 0.3853 -1.0501 34 1 7.8302 -0.8954 -1.8737 35 1 9.0927 1.2894 -1.1963 36 1 9.3562 0.6377 -2.8311 37 1 7.0868 2.5496 -2.4592 38 1 8.7406 3.2127 -2.4096 39 1 6.5987 1.4185 -6.9365 40 1 8.3444 1.2968 -6.6102 41 1 7.5236 3.9478 -6.0864 42 1 7.7281 5.6247 -6.5857 43 1 6.2301 -0.1988 -5.1336 44 1 7.9205 -0.2516 -4.5788 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001200395807.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:36 Heat of formation + Delta-G solvation = -43.194276 kcal Electronic energy + Delta-G solvation = -23891.663890 eV Core-core repulsion = 20423.897496 eV Total energy + Delta-G solvation = -3467.766394 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.72470 -39.85418 -37.13428 -36.61292 -36.36661 -34.49337 -33.27728 -32.58903 -30.56501 -28.93231 -27.55293 -26.41973 -24.84808 -23.38002 -22.59431 -22.36699 -20.02110 -19.42701 -19.12496 -18.23669 -17.84646 -17.61741 -17.31715 -16.80782 -16.23784 -15.75758 -15.68190 -15.46818 -15.00787 -14.93411 -14.83491 -14.49264 -14.07215 -13.88686 -13.56454 -13.42404 -13.23009 -12.91456 -12.74562 -12.60099 -12.56403 -12.27274 -12.08689 -11.93675 -11.87990 -11.58367 -11.31992 -11.18594 -10.99377 -10.98494 -10.85620 -10.62516 -9.68924 -9.16092 -8.44258 -5.37142 1.54419 1.56613 1.68134 1.78437 1.84517 1.90970 1.98838 2.63140 2.70194 3.37426 3.41940 3.51920 3.53998 3.82017 3.90834 3.99317 4.00930 4.03861 4.09697 4.22555 4.25334 4.36189 4.43053 4.51921 4.59216 4.62565 4.64136 4.74611 4.76031 4.77409 4.86284 4.98538 5.08774 5.15685 5.16738 5.19635 5.29743 5.49573 5.52659 6.27026 6.44656 6.66334 6.70686 7.04809 7.11655 7.94869 8.07811 9.07654 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.018158 B = 0.003176 C = 0.002893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.641451 B = 8812.711520 C = 9677.538534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.217 4.217 3 C -0.008 4.008 4 C -0.097 4.097 5 C -0.128 4.128 6 C 0.494 3.506 7 O -0.590 6.590 8 N -0.611 5.611 9 C 0.099 3.901 10 C -0.158 4.158 11 C 0.062 3.938 12 O -0.400 6.400 13 C 0.106 3.894 14 H 0.017 0.983 15 C 0.168 3.832 16 N -0.751 5.751 17 C -0.339 4.339 18 H 0.068 0.932 19 C -0.107 4.107 20 N -0.973 5.973 21 Si 1.134 2.866 22 H -0.290 1.290 23 H -0.274 1.274 24 H -0.277 1.277 25 C 0.095 3.905 26 H 0.238 0.762 27 H 0.113 0.887 28 H 0.106 0.894 29 H 0.043 0.957 30 H 0.053 0.947 31 H 0.135 0.865 32 H 0.124 0.876 33 H 0.120 0.880 34 H 0.095 0.905 35 H 0.124 0.876 36 H 0.070 0.930 37 H 0.045 0.955 38 H 0.094 0.906 39 H 0.030 0.970 40 H 0.031 0.969 41 H 0.361 0.639 42 H 0.241 0.759 43 H 0.075 0.925 44 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.793 -16.801 22.425 28.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.217 4.217 3 C -0.044 4.044 4 C -0.135 4.135 5 C -0.167 4.167 6 C 0.285 3.715 7 O -0.470 6.470 8 N -0.343 5.343 9 C -0.021 4.021 10 C -0.196 4.196 11 C -0.014 4.014 12 O -0.319 6.319 13 C 0.046 3.954 14 H 0.035 0.965 15 C 0.040 3.960 16 N -0.396 5.396 17 C -0.470 4.470 18 H 0.086 0.914 19 C -0.297 4.297 20 N -0.621 5.621 21 Si 0.957 3.043 22 H -0.216 1.216 23 H -0.200 1.200 24 H -0.203 1.203 25 C -0.030 4.030 26 H 0.254 0.746 27 H 0.131 0.869 28 H 0.125 0.875 29 H 0.062 0.938 30 H 0.072 0.928 31 H 0.153 0.847 32 H 0.142 0.858 33 H 0.138 0.862 34 H 0.113 0.887 35 H 0.142 0.858 36 H 0.089 0.911 37 H 0.063 0.937 38 H 0.112 0.888 39 H 0.048 0.952 40 H 0.049 0.951 41 H 0.192 0.808 42 H 0.052 0.948 43 H 0.094 0.906 44 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -3.712 -15.692 20.670 26.216 hybrid contribution -0.976 -0.843 0.927 1.588 sum -4.688 -16.535 21.598 27.601 Atomic orbital electron populations 1.25721 0.97171 1.01017 1.00114 1.23895 0.95965 1.00762 1.01079 1.18851 0.83591 1.05418 0.96529 1.21198 0.94114 1.01999 0.96209 1.21796 0.96102 1.07495 0.91323 1.21760 0.81820 0.74720 0.93240 1.90724 1.56240 1.51381 1.48685 1.48124 1.06598 1.72569 1.06999 1.22403 0.90537 1.01295 0.87881 1.22441 0.98354 0.94866 1.03891 1.22458 1.00795 0.99171 0.78965 1.86350 1.42507 1.82299 1.20761 1.21859 0.88419 0.93716 0.91407 0.96465 1.20685 0.98031 0.86059 0.91180 1.42419 1.87321 1.02812 1.07029 1.20444 1.44675 0.94887 0.86986 0.91376 1.27414 1.00658 0.91552 1.10119 1.70977 1.54481 1.34329 1.02296 0.82583 0.76984 0.75497 0.69253 1.21585 1.19995 1.20332 1.22033 1.01475 0.95640 0.83866 0.74559 0.86901 0.87541 0.93790 0.92794 0.84670 0.85758 0.86205 0.88691 0.85817 0.91134 0.93665 0.88770 0.95214 0.95093 0.80753 0.94844 0.90624 0.88152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -3.84 19.25 74.32 1.43 -2.41 16 2 C -0.22 -3.96 13.34 31.12 0.42 -3.54 16 3 C -0.01 -0.09 5.70 28.79 0.16 0.07 16 4 C -0.10 -1.68 4.46 30.59 0.14 -1.54 16 5 C -0.13 -1.61 4.04 29.85 0.12 -1.49 16 6 C 0.49 12.03 7.63 87.66 0.67 12.70 16 7 O -0.59 -21.21 15.41 -3.03 -0.05 -21.25 16 8 N -0.61 -13.31 2.19 -817.82 -1.79 -15.10 16 9 C 0.10 1.13 6.00 86.38 0.52 1.64 16 10 C -0.16 -2.29 5.79 30.31 0.18 -2.11 16 11 C 0.06 1.51 6.38 71.50 0.46 1.96 16 12 O -0.40 -14.49 9.18 -117.94 -1.08 -15.57 16 13 C 0.11 4.01 2.74 31.23 0.09 4.10 16 14 H 0.02 0.76 8.14 -2.38 -0.02 0.74 16 15 C 0.17 7.69 5.95 86.38 0.51 8.20 16 16 N -0.75 -42.69 5.49 -343.47 -1.88 -44.58 16 17 C -0.34 -20.70 9.99 84.03 0.84 -19.86 16 18 H 0.07 4.01 7.83 -2.91 -0.02 3.99 16 19 C -0.11 -6.60 5.50 84.86 0.47 -6.13 16 20 N -0.97 -64.59 13.70 21.65 0.30 -64.30 16 21 Si 1.13 54.45 29.92 68.60 2.05 56.50 16 22 H -0.29 -14.06 7.11 99.48 0.71 -13.36 16 23 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 24 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 25 C 0.09 2.75 4.87 87.27 0.43 3.17 16 26 H 0.24 2.46 7.80 -4.42 -0.03 2.42 16 27 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.11 0.86 8.14 -2.38 -0.02 0.85 16 29 H 0.04 1.02 8.10 -2.39 -0.02 1.00 16 30 H 0.05 1.14 8.10 -2.38 -0.02 1.12 16 31 H 0.14 0.69 8.04 -2.39 -0.02 0.67 16 32 H 0.12 0.91 7.41 -2.38 -0.02 0.89 16 33 H 0.12 0.54 5.88 -2.39 -0.01 0.53 16 34 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 35 H 0.12 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.07 1.25 8.01 -2.39 -0.02 1.23 16 37 H 0.04 1.10 7.40 -2.39 -0.02 1.08 16 38 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 39 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 40 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 41 H 0.36 21.48 6.36 -92.71 -0.59 20.89 16 42 H 0.24 16.18 6.77 -92.71 -0.63 15.55 16 43 H 0.08 2.46 7.27 -2.39 -0.02 2.44 16 44 H 0.10 2.53 8.11 -2.39 -0.02 2.51 16 Total: -1.00 -87.36 361.06 4.49 -82.88 By element: Atomic # 1 Polarization: 26.14 SS G_CDS: 0.53 Total: 26.67 kcal Atomic # 6 Polarization: -11.66 SS G_CDS: 6.42 Total: -5.24 kcal Atomic # 7 Polarization: -120.60 SS G_CDS: -3.38 Total: -123.97 kcal Atomic # 8 Polarization: -35.70 SS G_CDS: -1.13 Total: -36.83 kcal Atomic # 14 Polarization: 54.45 SS G_CDS: 2.05 Total: 56.50 kcal Total: -87.36 4.49 -82.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200395807.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.682 kcal (2) G-P(sol) polarization free energy of solvation -87.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds