Wall clock time and date at job start Tue Mar 31 2020 07:03:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.47441 * 2 1 4 4 C 1.47200 * 109.46927 * 120.00045 * 2 1 3 5 5 C 2.64600 * 109.46972 * 120.00096 * 2 1 3 6 6 C 4.07799 * 109.46922 * 120.00053 * 2 1 3 7 7 O 1.21609 * 120.00254 * 41.35792 * 6 5 4 8 8 N 1.34778 * 119.99944 * 221.36111 * 6 5 4 9 9 C 1.47514 * 118.75463 * 359.97438 * 8 6 5 10 10 C 1.53570 * 111.02562 * 138.39222 * 9 8 6 11 11 C 1.51530 * 109.58377 * 320.02037 * 10 9 8 12 12 O 1.42157 * 108.75077 * 91.40291 * 11 10 9 13 13 C 1.38021 * 119.43805 * 272.76720 * 12 11 10 14 14 H 1.08994 * 109.46941 * 303.42426 * 13 12 11 15 15 C 1.53005 * 109.46497 * 183.43418 * 13 12 11 16 16 N 1.46496 * 109.47400 * 64.99462 * 15 13 12 17 17 C 1.36939 * 120.00077 * 179.97438 * 16 15 13 18 18 H 1.07997 * 119.99728 * 359.72656 * 17 16 15 19 19 C 1.38815 * 119.99845 * 180.02562 * 17 16 15 20 20 N 1.31617 * 119.99916 * 179.72546 * 19 17 16 21 21 Si 1.86803 * 119.99958 * 359.72107 * 19 17 16 22 22 H 1.48500 * 109.46986 * 90.00489 * 21 19 17 23 23 H 1.48496 * 109.47029 * 210.00506 * 21 19 17 24 24 H 1.48499 * 109.47352 * 330.00336 * 21 19 17 25 25 C 1.45120 * 118.75717 * 180.02562 * 8 6 5 26 26 H 1.09000 * 109.46646 * 59.99602 * 1 2 3 27 27 H 1.08995 * 109.47562 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46582 * 300.00427 * 1 2 3 29 29 H 1.08994 * 109.46772 * 239.99684 * 2 1 3 30 30 H 1.08997 * 109.46913 * 180.02562 * 3 2 1 31 31 H 1.09005 * 109.46840 * 300.00033 * 3 2 1 32 32 H 1.08998 * 109.47077 * 59.99682 * 3 2 1 33 33 H 1.08996 * 109.16835 * 258.78698 * 9 8 6 34 34 H 1.08993 * 109.16718 * 18.04714 * 9 8 6 35 35 H 1.09003 * 109.45645 * 80.05717 * 10 9 8 36 36 H 1.09002 * 109.45139 * 199.98557 * 10 9 8 37 37 H 1.09000 * 109.59578 * 211.18109 * 11 10 9 38 38 H 1.09002 * 109.59309 * 331.62235 * 11 10 9 39 39 H 1.09007 * 109.47086 * 304.99364 * 15 13 12 40 40 H 1.09001 * 109.46760 * 184.99441 * 15 13 12 41 41 H 0.97004 * 120.00009 * 0.02562 * 16 15 13 42 42 H 0.97000 * 120.00284 * 179.97438 * 20 19 17 43 43 H 1.09000 * 109.45845 * 149.24381 * 25 8 6 44 44 H 1.08991 * 109.46316 * 29.28109 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0207 -0.6939 1.2019 5 6 2.4120 -1.2474 2.1605 6 6 2.8892 -1.9224 3.3297 7 8 2.7744 -3.1294 3.4245 8 7 3.4656 -1.2201 4.3252 9 6 3.5912 0.2426 4.1813 10 6 3.2604 0.9564 5.5002 11 6 2.0793 0.2770 6.1631 12 8 2.5651 -0.7280 7.0434 13 6 2.8113 -1.9955 6.5558 14 1 1.9051 -2.3907 6.0971 15 6 3.2412 -2.9093 7.7053 16 7 2.1300 -3.0652 8.6470 17 6 2.2819 -3.8451 9.7623 18 1 3.2195 -4.3488 9.9453 19 6 1.2287 -3.9933 10.6544 20 7 1.3730 -4.7472 11.7235 21 14 -0.3933 -3.1225 10.3374 22 1 -1.2781 -4.0020 9.5319 23 1 -1.0499 -2.8123 11.6327 24 1 -0.1412 -1.8610 9.5957 25 6 3.9402 -1.9316 5.4976 26 1 -0.3632 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3632 0.5139 0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 3.1301 1.4424 -0.0005 31 1 1.6768 1.9563 -0.8900 32 1 1.6768 1.9563 0.8899 33 1 4.6122 0.4870 3.8884 34 1 2.9050 0.5863 3.4074 35 1 4.1241 0.9118 6.1637 36 1 3.0128 1.9983 5.2969 37 1 1.5051 1.0112 6.7282 38 1 1.4455 -0.1788 5.4023 39 1 4.0948 -2.4683 8.2203 40 1 3.5208 -3.8853 7.3084 41 1 1.2862 -2.6166 8.4802 42 1 0.6372 -4.8505 12.3471 43 1 4.8007 -1.4094 5.9157 44 1 4.2315 -2.9432 5.2153 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001200462784.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:39 Heat of formation + Delta-G solvation = -11.997812 kcal Electronic energy + Delta-G solvation = -23920.031325 eV Core-core repulsion = 20453.617711 eV Total energy + Delta-G solvation = -3466.413614 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.68166 -38.60133 -36.82824 -35.78596 -34.76854 -32.97970 -32.30715 -31.14252 -29.22592 -27.71816 -26.96570 -25.77258 -23.92745 -22.47391 -21.78199 -21.06141 -20.64204 -18.35561 -17.64271 -16.71375 -16.62609 -16.50634 -15.87413 -15.43878 -14.95774 -14.85903 -14.33228 -14.09236 -13.91342 -13.74026 -13.48463 -12.93566 -12.77594 -12.63595 -12.55324 -12.43660 -12.19667 -12.01368 -11.92829 -11.85090 -11.52295 -11.20707 -10.94435 -10.81303 -10.74954 -10.58620 -10.34334 -10.23348 -10.02894 -9.54829 -9.51396 -8.82567 -8.72354 -7.13748 -5.68499 -3.02875 1.32911 1.99727 2.71491 3.29936 3.46157 3.51116 3.52403 3.62350 3.82168 4.44077 4.48600 4.54710 4.57792 4.62543 4.68702 4.82963 4.91600 5.06182 5.09310 5.21603 5.23671 5.27540 5.33090 5.35724 5.42195 5.45356 5.52223 5.61789 5.66093 5.70885 5.71189 5.79615 5.86289 5.97334 6.00930 6.34247 6.58786 6.69816 6.92838 7.00550 7.84396 7.87612 8.07363 8.50510 9.30097 10.02734 10.23432 11.49999 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.021034 B = 0.003436 C = 0.003362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.884023 B = 8147.219068 C = 8326.751266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.009 3.991 3 C -0.146 4.146 4 C -0.082 4.082 5 C -0.215 4.215 6 C 0.623 3.377 7 O -0.514 6.514 8 N -0.599 5.599 9 C 0.107 3.893 10 C -0.166 4.166 11 C 0.071 3.929 12 O -0.371 6.371 13 C 0.083 3.917 14 H 0.053 0.947 15 C 0.171 3.829 16 N -0.750 5.750 17 C -0.240 4.240 18 H 0.091 0.909 19 C 0.004 3.996 20 N -0.936 5.936 21 Si 0.883 3.117 22 H -0.285 1.285 23 H -0.291 1.291 24 H -0.274 1.274 25 C 0.082 3.918 26 H 0.070 0.930 27 H 0.063 0.937 28 H 0.062 0.938 29 H 0.101 0.899 30 H 0.061 0.939 31 H 0.070 0.930 32 H 0.062 0.938 33 H 0.070 0.930 34 H 0.082 0.918 35 H 0.085 0.915 36 H 0.086 0.914 37 H 0.090 0.910 38 H 0.046 0.954 39 H 0.037 0.963 40 H 0.045 0.955 41 H 0.364 0.636 42 H 0.259 0.741 43 H 0.090 0.910 44 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.947 17.297 -25.756 31.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.009 4.009 3 C -0.203 4.203 4 C -0.084 4.084 5 C -0.218 4.218 6 C 0.411 3.589 7 O -0.390 6.390 8 N -0.331 5.331 9 C -0.015 4.015 10 C -0.204 4.204 11 C -0.005 4.005 12 O -0.289 6.289 13 C 0.023 3.977 14 H 0.071 0.929 15 C 0.043 3.957 16 N -0.396 5.396 17 C -0.370 4.370 18 H 0.109 0.891 19 C -0.192 4.192 20 N -0.584 5.584 21 Si 0.713 3.287 22 H -0.212 1.212 23 H -0.218 1.218 24 H -0.200 1.200 25 C -0.041 4.041 26 H 0.089 0.911 27 H 0.082 0.918 28 H 0.081 0.919 29 H 0.119 0.881 30 H 0.080 0.920 31 H 0.089 0.911 32 H 0.081 0.919 33 H 0.089 0.911 34 H 0.100 0.900 35 H 0.104 0.896 36 H 0.105 0.895 37 H 0.108 0.892 38 H 0.065 0.935 39 H 0.055 0.945 40 H 0.063 0.937 41 H 0.196 0.804 42 H 0.069 0.931 43 H 0.108 0.892 44 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 3.058 16.546 -25.313 30.395 hybrid contribution -1.211 0.594 -0.471 1.429 sum 1.847 17.140 -25.784 31.016 Atomic orbital electron populations 1.21850 0.92652 1.03047 1.02894 1.18507 0.96369 0.95173 0.90876 1.21854 1.01678 0.93876 1.02941 1.22614 0.94354 0.97001 0.94453 1.20691 1.04100 1.00074 0.96928 1.14947 0.77954 0.85717 0.80326 1.90895 1.55388 1.13160 1.79566 1.47773 1.59349 1.07741 1.18274 1.21999 1.02162 0.78684 0.98693 1.22499 1.01332 0.99999 0.96559 1.22145 0.94500 0.90451 0.93452 1.86431 1.84700 1.19286 1.38451 1.22379 0.96472 0.83919 0.94948 0.92944 1.20595 0.92082 0.94614 0.88405 1.42572 1.11846 1.59315 1.25847 1.19062 1.00087 1.20474 0.97368 0.89141 1.24640 0.97832 0.99804 0.96908 1.69703 1.32129 1.42934 1.13672 0.86549 0.85147 0.79961 0.77057 1.21184 1.21775 1.20034 1.22501 0.98060 0.98930 0.84595 0.91097 0.91827 0.91924 0.88113 0.91973 0.91134 0.91924 0.91134 0.90005 0.89627 0.89545 0.89177 0.93523 0.94523 0.93722 0.80364 0.93144 0.89155 0.88248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.80 9.15 37.16 0.34 -0.46 16 2 C 0.01 0.05 3.30 -93.40 -0.31 -0.26 16 3 C -0.15 -0.63 9.15 37.16 0.34 -0.29 16 4 C -0.08 -0.80 12.49 -37.12 -0.46 -1.26 16 5 C -0.22 -2.67 11.45 -38.84 -0.44 -3.12 16 6 C 0.62 9.25 7.49 -14.33 -0.11 9.14 16 7 O -0.51 -9.61 16.51 5.27 0.09 -9.52 16 8 N -0.60 -7.62 2.19 -175.32 -0.38 -8.00 16 9 C 0.11 0.98 6.02 -3.19 -0.02 0.96 16 10 C -0.17 -1.52 5.78 -27.18 -0.16 -1.67 16 11 C 0.07 0.90 6.38 36.41 0.23 1.13 16 12 O -0.37 -6.29 9.38 -26.56 -0.25 -6.53 16 13 C 0.08 1.43 2.68 -25.75 -0.07 1.37 16 14 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 15 C 0.17 3.53 5.92 -4.04 -0.02 3.50 16 16 N -0.75 -19.19 5.34 -59.91 -0.32 -19.51 16 17 C -0.24 -7.13 10.47 -15.06 -0.16 -7.29 16 18 H 0.09 2.83 8.06 -52.49 -0.42 2.41 16 19 C 0.00 0.11 5.50 -17.43 -0.10 0.01 16 20 N -0.94 -30.39 13.97 55.49 0.78 -29.61 16 21 Si 0.88 23.23 27.73 -169.99 -4.71 18.52 16 22 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 23 H -0.29 -7.67 7.11 56.52 0.40 -7.26 16 24 H -0.27 -6.91 6.53 56.52 0.37 -6.54 16 25 C 0.08 1.15 4.87 -3.80 -0.02 1.13 16 26 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 27 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 29 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 31 H 0.07 0.20 8.14 -51.93 -0.42 -0.22 16 32 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.08 0.67 6.31 -51.93 -0.33 0.35 16 35 H 0.09 0.84 8.01 -51.93 -0.42 0.43 16 36 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 37 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.05 0.61 7.40 -51.93 -0.38 0.22 16 39 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.36 9.28 5.52 -40.82 -0.23 9.05 16 42 H 0.26 7.97 8.31 -40.82 -0.34 7.64 16 43 H 0.09 1.10 8.11 -51.93 -0.42 0.68 16 44 H 0.10 1.46 7.27 -51.93 -0.38 1.09 16 LS Contribution 361.34 15.07 5.45 5.45 Total: -1.00 -36.23 361.34 -7.55 -43.78 By element: Atomic # 1 Polarization: 9.78 SS G_CDS: -7.24 Total: 2.54 kcal Atomic # 6 Polarization: 3.85 SS G_CDS: -0.95 Total: 2.90 kcal Atomic # 7 Polarization: -57.19 SS G_CDS: 0.07 Total: -57.12 kcal Atomic # 8 Polarization: -15.90 SS G_CDS: -0.16 Total: -16.06 kcal Atomic # 14 Polarization: 23.23 SS G_CDS: -4.71 Total: 18.52 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -36.23 -7.55 -43.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200462784.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.780 kcal (2) G-P(sol) polarization free energy of solvation -36.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds