Wall clock time and date at job start Tue Mar 31 2020 07:03:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.47441 * 2 1 4 4 C 1.47200 * 109.46927 * 120.00045 * 2 1 3 5 5 C 2.64600 * 109.46972 * 120.00096 * 2 1 3 6 6 C 4.07799 * 109.46922 * 120.00053 * 2 1 3 7 7 O 1.21609 * 120.00254 * 41.35792 * 6 5 4 8 8 N 1.34778 * 119.99944 * 221.36111 * 6 5 4 9 9 C 1.47514 * 118.75463 * 359.97438 * 8 6 5 10 10 C 1.53570 * 111.02562 * 138.39222 * 9 8 6 11 11 C 1.51530 * 109.58377 * 320.02037 * 10 9 8 12 12 O 1.42157 * 108.75077 * 91.40291 * 11 10 9 13 13 C 1.38021 * 119.43805 * 272.76720 * 12 11 10 14 14 H 1.08994 * 109.46941 * 303.42426 * 13 12 11 15 15 C 1.53005 * 109.46497 * 183.43418 * 13 12 11 16 16 N 1.46496 * 109.47400 * 64.99462 * 15 13 12 17 17 C 1.36939 * 120.00077 * 179.97438 * 16 15 13 18 18 H 1.07997 * 119.99728 * 359.72656 * 17 16 15 19 19 C 1.38815 * 119.99845 * 180.02562 * 17 16 15 20 20 N 1.31617 * 119.99916 * 179.72546 * 19 17 16 21 21 Si 1.86803 * 119.99958 * 359.72107 * 19 17 16 22 22 H 1.48500 * 109.46986 * 90.00489 * 21 19 17 23 23 H 1.48496 * 109.47029 * 210.00506 * 21 19 17 24 24 H 1.48499 * 109.47352 * 330.00336 * 21 19 17 25 25 C 1.45120 * 118.75717 * 180.02562 * 8 6 5 26 26 H 1.09000 * 109.46646 * 59.99602 * 1 2 3 27 27 H 1.08995 * 109.47562 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46582 * 300.00427 * 1 2 3 29 29 H 1.08994 * 109.46772 * 239.99684 * 2 1 3 30 30 H 1.08997 * 109.46913 * 180.02562 * 3 2 1 31 31 H 1.09005 * 109.46840 * 300.00033 * 3 2 1 32 32 H 1.08998 * 109.47077 * 59.99682 * 3 2 1 33 33 H 1.08996 * 109.16835 * 258.78698 * 9 8 6 34 34 H 1.08993 * 109.16718 * 18.04714 * 9 8 6 35 35 H 1.09003 * 109.45645 * 80.05717 * 10 9 8 36 36 H 1.09002 * 109.45139 * 199.98557 * 10 9 8 37 37 H 1.09000 * 109.59578 * 211.18109 * 11 10 9 38 38 H 1.09002 * 109.59309 * 331.62235 * 11 10 9 39 39 H 1.09007 * 109.47086 * 304.99364 * 15 13 12 40 40 H 1.09001 * 109.46760 * 184.99441 * 15 13 12 41 41 H 0.97004 * 120.00009 * 0.02562 * 16 15 13 42 42 H 0.97000 * 120.00284 * 179.97438 * 20 19 17 43 43 H 1.09000 * 109.45845 * 149.24381 * 25 8 6 44 44 H 1.08991 * 109.46316 * 29.28109 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0207 -0.6939 1.2019 5 6 2.4120 -1.2474 2.1605 6 6 2.8892 -1.9224 3.3297 7 8 2.7744 -3.1294 3.4245 8 7 3.4656 -1.2201 4.3252 9 6 3.5912 0.2426 4.1813 10 6 3.2604 0.9564 5.5002 11 6 2.0793 0.2770 6.1631 12 8 2.5651 -0.7280 7.0434 13 6 2.8113 -1.9955 6.5558 14 1 1.9051 -2.3907 6.0971 15 6 3.2412 -2.9093 7.7053 16 7 2.1300 -3.0652 8.6470 17 6 2.2819 -3.8451 9.7623 18 1 3.2195 -4.3488 9.9453 19 6 1.2287 -3.9933 10.6544 20 7 1.3730 -4.7472 11.7235 21 14 -0.3933 -3.1225 10.3374 22 1 -1.2781 -4.0020 9.5319 23 1 -1.0499 -2.8123 11.6327 24 1 -0.1412 -1.8610 9.5957 25 6 3.9402 -1.9316 5.4976 26 1 -0.3632 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3632 0.5139 0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 3.1301 1.4424 -0.0005 31 1 1.6768 1.9563 -0.8900 32 1 1.6768 1.9563 0.8899 33 1 4.6122 0.4870 3.8884 34 1 2.9050 0.5863 3.4074 35 1 4.1241 0.9118 6.1637 36 1 3.0128 1.9983 5.2969 37 1 1.5051 1.0112 6.7282 38 1 1.4455 -0.1788 5.4023 39 1 4.0948 -2.4683 8.2203 40 1 3.5208 -3.8853 7.3084 41 1 1.2862 -2.6166 8.4802 42 1 0.6372 -4.8505 12.3471 43 1 4.8007 -1.4094 5.9157 44 1 4.2315 -2.9432 5.2153 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001200462784.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:39 Heat of formation + Delta-G solvation = -36.417426 kcal Electronic energy + Delta-G solvation = -23921.090239 eV Core-core repulsion = 20453.617711 eV Total energy + Delta-G solvation = -3467.472528 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.78627 -39.82249 -37.40542 -37.07616 -36.40141 -34.43700 -33.15574 -33.01091 -30.59998 -28.19684 -28.05607 -26.99997 -25.23839 -23.75636 -22.98020 -22.45321 -21.51958 -19.82752 -19.31438 -17.90970 -17.77983 -17.35915 -16.90310 -16.57935 -16.25458 -16.18018 -15.49386 -15.25192 -14.97991 -14.91454 -14.69667 -14.40518 -14.05693 -13.87772 -13.65567 -13.34967 -13.10516 -13.00568 -12.87955 -12.69868 -12.50336 -12.44340 -12.32283 -12.20641 -12.07458 -11.84837 -11.67801 -11.50986 -11.35200 -11.13193 -11.04766 -10.67988 -9.84018 -9.33733 -8.05027 -5.38229 0.37622 1.15120 1.34785 1.37598 1.46033 1.77014 2.33605 2.46303 2.61611 2.85589 3.26652 3.40762 3.72503 3.84112 3.86728 3.96674 4.03719 4.08638 4.14959 4.17311 4.21514 4.36237 4.40935 4.50171 4.61196 4.65453 4.76375 4.79070 4.83548 4.91420 4.96443 5.02173 5.04654 5.09882 5.11528 5.30976 5.35361 5.37221 5.71532 5.99526 6.12577 6.18495 6.62342 6.80465 7.03930 7.79593 7.99503 9.16398 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.021034 B = 0.003436 C = 0.003362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.884023 B = 8147.219068 C = 8326.751266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.004 3.996 3 C -0.143 4.143 4 C -0.038 4.038 5 C -0.270 4.270 6 C 0.619 3.381 7 O -0.570 6.570 8 N -0.594 5.594 9 C 0.103 3.897 10 C -0.155 4.155 11 C 0.062 3.938 12 O -0.394 6.394 13 C 0.099 3.901 14 H 0.027 0.973 15 C 0.166 3.834 16 N -0.755 5.755 17 C -0.235 4.235 18 H 0.062 0.938 19 C -0.062 4.062 20 N -0.982 5.982 21 Si 0.953 3.047 22 H -0.281 1.281 23 H -0.288 1.288 24 H -0.257 1.257 25 C 0.092 3.908 26 H 0.095 0.905 27 H 0.050 0.950 28 H 0.057 0.943 29 H 0.120 0.880 30 H 0.063 0.937 31 H 0.091 0.909 32 H 0.061 0.939 33 H 0.095 0.905 34 H 0.094 0.906 35 H 0.083 0.917 36 H 0.123 0.877 37 H 0.104 0.896 38 H 0.038 0.962 39 H 0.042 0.958 40 H 0.043 0.957 41 H 0.365 0.635 42 H 0.259 0.741 43 H 0.115 0.885 44 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.500 20.852 -28.510 35.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.014 4.014 3 C -0.200 4.200 4 C -0.040 4.040 5 C -0.273 4.273 6 C 0.409 3.591 7 O -0.450 6.450 8 N -0.324 5.324 9 C -0.018 4.018 10 C -0.193 4.193 11 C -0.014 4.014 12 O -0.313 6.313 13 C 0.039 3.961 14 H 0.045 0.955 15 C 0.039 3.961 16 N -0.400 5.400 17 C -0.366 4.366 18 H 0.080 0.920 19 C -0.253 4.253 20 N -0.632 5.632 21 Si 0.780 3.220 22 H -0.207 1.207 23 H -0.215 1.215 24 H -0.182 1.182 25 C -0.032 4.032 26 H 0.114 0.886 27 H 0.069 0.931 28 H 0.076 0.924 29 H 0.137 0.863 30 H 0.082 0.918 31 H 0.110 0.890 32 H 0.080 0.920 33 H 0.113 0.887 34 H 0.112 0.888 35 H 0.102 0.898 36 H 0.141 0.859 37 H 0.122 0.878 38 H 0.056 0.944 39 H 0.060 0.940 40 H 0.061 0.939 41 H 0.197 0.803 42 H 0.068 0.932 43 H 0.133 0.867 44 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 2.641 20.170 -28.108 34.696 hybrid contribution -1.028 -0.455 0.294 1.162 sum 1.613 19.715 -27.814 34.131 Atomic orbital electron populations 1.21875 0.92039 1.02581 1.03927 1.18891 0.96752 0.96223 0.89536 1.21863 1.01802 0.92364 1.03997 1.23468 0.91641 0.95105 0.93807 1.20394 1.06750 1.02358 0.97804 1.15298 0.77298 0.85261 0.81235 1.90850 1.57814 1.15505 1.80870 1.47860 1.58230 1.09269 1.17063 1.22296 1.04065 0.76145 0.99245 1.22438 0.99528 1.01437 0.95850 1.22453 0.96104 0.89610 0.93219 1.86361 1.85208 1.19363 1.40397 1.21968 0.96503 0.83821 0.93820 0.95488 1.20740 0.90878 0.95701 0.88771 1.42595 1.13244 1.58694 1.25487 1.19070 0.98940 1.20102 0.98452 0.92049 1.25463 1.01866 1.01160 0.96854 1.69871 1.33435 1.44938 1.14977 0.85425 0.80107 0.79335 0.77091 1.20705 1.21475 1.18160 1.22278 0.97389 0.99187 0.84353 0.88597 0.93078 0.92425 0.86268 0.91809 0.89048 0.91987 0.88666 0.88778 0.89828 0.85917 0.87823 0.94376 0.93993 0.93870 0.80252 0.93209 0.86731 0.89501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.15 71.98 0.66 -0.53 16 2 C 0.00 0.03 3.30 -12.60 -0.04 -0.01 16 3 C -0.14 -0.67 9.15 71.98 0.66 -0.01 16 4 C -0.04 -0.66 12.49 31.13 0.39 -0.27 16 5 C -0.27 -6.53 11.45 30.01 0.34 -6.19 16 6 C 0.62 18.66 7.49 85.49 0.64 19.30 16 7 O -0.57 -22.41 16.51 -4.06 -0.07 -22.47 16 8 N -0.59 -14.61 2.19 -826.84 -1.81 -16.42 16 9 C 0.10 1.59 6.02 86.38 0.52 2.11 16 10 C -0.15 -2.30 5.78 30.30 0.18 -2.13 16 11 C 0.06 1.43 6.38 71.50 0.46 1.89 16 12 O -0.39 -12.99 9.38 -117.95 -1.11 -14.10 16 13 C 0.10 3.45 2.68 31.23 0.08 3.54 16 14 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 15 C 0.17 6.97 5.92 86.38 0.51 7.48 16 16 N -0.75 -39.08 5.34 -343.44 -1.83 -40.92 16 17 C -0.23 -14.31 10.47 84.03 0.88 -13.43 16 18 H 0.06 4.01 8.06 -2.91 -0.02 3.99 16 19 C -0.06 -3.85 5.50 84.86 0.47 -3.38 16 20 N -0.98 -65.30 13.97 21.65 0.30 -65.00 16 21 Si 0.95 48.50 27.73 68.60 1.90 50.40 16 22 H -0.28 -14.01 7.11 99.48 0.71 -13.30 16 23 H -0.29 -14.47 7.11 99.48 0.71 -13.76 16 24 H -0.26 -12.17 6.53 99.48 0.65 -11.52 16 25 C 0.09 2.54 4.87 87.27 0.42 2.97 16 26 H 0.10 0.32 8.14 -2.39 -0.02 0.31 16 27 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 28 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 29 H 0.12 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.06 0.31 8.14 -2.39 -0.02 0.29 16 31 H 0.09 0.10 8.14 -2.38 -0.02 0.08 16 32 H 0.06 0.32 8.14 -2.39 -0.02 0.30 16 33 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.09 1.26 6.31 -2.39 -0.02 1.24 16 35 H 0.08 1.35 8.01 -2.39 -0.02 1.33 16 36 H 0.12 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 38 H 0.04 0.95 7.40 -2.39 -0.02 0.93 16 39 H 0.04 1.73 8.14 -2.38 -0.02 1.71 16 40 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 41 H 0.36 18.53 5.52 -92.71 -0.51 18.02 16 42 H 0.26 16.32 8.31 -92.71 -0.77 15.55 16 43 H 0.11 2.61 8.11 -2.39 -0.02 2.59 16 44 H 0.09 2.64 7.27 -2.39 -0.02 2.63 16 Total: -1.00 -82.03 361.34 3.97 -78.06 By element: Atomic # 1 Polarization: 18.70 SS G_CDS: 0.42 Total: 19.12 kcal Atomic # 6 Polarization: 5.17 SS G_CDS: 6.17 Total: 11.34 kcal Atomic # 7 Polarization: -119.00 SS G_CDS: -3.34 Total: -122.34 kcal Atomic # 8 Polarization: -35.40 SS G_CDS: -1.17 Total: -36.57 kcal Atomic # 14 Polarization: 48.50 SS G_CDS: 1.90 Total: 50.40 kcal Total: -82.03 3.97 -78.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200462784.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.642 kcal (2) G-P(sol) polarization free energy of solvation -82.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds