Wall clock time and date at job start Tue Mar 31 2020 07:24:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53009 * 109.46989 * 2 1 4 4 C 1.52999 * 109.46989 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.47008 * 180.02562 * 4 3 2 6 6 C 1.36942 * 119.99506 * 269.99739 * 5 4 3 7 7 H 1.07998 * 120.00076 * 140.31921 * 6 5 4 8 8 C 1.38809 * 120.00125 * 320.31978 * 6 5 4 9 9 N 1.31619 * 119.99994 * 163.05487 * 8 6 5 10 10 Si 1.86799 * 120.00040 * 343.05703 * 8 6 5 11 11 H 1.48503 * 109.47209 * 95.54663 * 10 8 6 12 12 H 1.48505 * 109.46976 * 215.54504 * 10 8 6 13 13 H 1.48500 * 109.47306 * 335.54328 * 10 8 6 14 14 C 1.46500 * 120.00460 * 89.99814 * 5 4 3 15 15 C 1.50696 * 109.46766 * 269.99376 * 14 5 4 16 16 C 1.38052 * 120.33329 * 275.40163 * 15 14 5 17 17 N 1.31991 * 120.93660 * 179.75417 * 16 15 14 18 18 C 1.32162 * 121.70551 * 0.56003 * 17 16 15 19 19 O 1.35763 * 119.71609 * 179.71540 * 18 17 16 20 20 C 1.42895 * 117.00274 * 359.72747 * 19 18 17 21 21 C 1.39353 * 120.56758 * 359.44101 * 18 17 16 22 22 O 1.35999 * 120.49032 * 180.29500 * 21 18 17 23 23 C 1.42899 * 116.99557 * 180.02562 * 22 21 18 24 24 C 1.38780 * 120.33330 * 95.43053 * 15 14 5 25 25 H 1.09000 * 109.46884 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47109 * 299.99822 * 1 2 3 27 27 H 1.09008 * 109.46954 * 60.00279 * 1 2 3 28 28 H 1.08996 * 109.47560 * 240.00114 * 2 1 3 29 29 H 1.09002 * 109.47613 * 119.99868 * 2 1 3 30 30 H 1.09000 * 109.47049 * 60.00141 * 3 2 1 31 31 H 1.09000 * 109.46713 * 299.99807 * 3 2 1 32 32 H 1.08996 * 109.47560 * 60.00114 * 4 3 2 33 33 H 1.09009 * 109.47332 * 300.00101 * 4 3 2 34 34 H 0.97005 * 120.00329 * 179.97438 * 9 8 6 35 35 H 1.08994 * 109.46841 * 149.99034 * 14 5 4 36 36 H 1.09002 * 109.46736 * 29.99337 * 14 5 4 37 37 H 1.08005 * 119.53298 * 0.04626 * 16 15 14 38 38 H 1.08996 * 109.47105 * 300.00250 * 20 19 18 39 39 H 1.09010 * 109.46934 * 60.00166 * 20 19 18 40 40 H 1.09001 * 109.47373 * 179.97438 * 20 19 18 41 41 H 1.08997 * 109.47449 * 299.99604 * 23 22 21 42 42 H 1.09002 * 109.47092 * 60.00596 * 23 22 21 43 43 H 1.09007 * 109.46485 * 180.02562 * 23 22 21 44 44 H 1.07998 * 120.78482 * 359.97438 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 7 4.0583 2.8238 0.0013 6 6 4.2870 3.4696 -1.1845 7 1 4.0218 4.5110 -1.2921 8 6 4.8598 2.7858 -2.2480 9 7 4.7796 3.2775 -3.4663 10 14 5.7442 1.1676 -1.9503 11 1 4.8117 0.0399 -2.2034 12 1 6.9075 1.0633 -2.8675 13 1 6.2166 1.1132 -0.5435 14 6 4.3019 3.5142 1.2702 15 6 3.0459 4.2245 1.7047 16 6 2.7548 5.4845 1.2214 17 7 1.6557 6.1155 1.5902 18 6 0.7981 5.5779 2.4400 19 8 -0.3171 6.2655 2.7961 20 6 -0.4926 7.5608 2.2189 21 6 1.0257 4.3091 2.9692 22 8 0.1391 3.7549 3.8390 23 6 0.4467 2.4509 4.3359 24 6 2.1705 3.6190 2.5953 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8901 28 1 1.8934 -0.5138 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 1.6767 1.9564 0.8900 31 1 1.6766 1.9563 -0.8900 32 1 3.9337 0.9287 -0.8891 33 1 3.9330 0.9288 0.8909 34 1 5.1801 2.7999 -4.2095 35 1 5.1039 4.2407 1.1404 36 1 4.5896 2.7873 2.0298 37 1 3.4336 5.9586 0.5279 38 1 0.3461 8.1991 2.4967 39 1 -0.5376 7.4719 1.1334 40 1 -1.4206 7.9995 2.5859 41 1 0.5158 1.7515 3.5028 42 1 1.3985 2.4794 4.8664 43 1 -0.3400 2.1271 5.0175 44 1 2.3752 2.6340 2.9881 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001209620122.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:24:54 Heat of formation + Delta-G solvation = -22.142905 kcal Electronic energy + Delta-G solvation = -24892.373469 eV Core-core repulsion = 21425.519930 eV Total energy + Delta-G solvation = -3466.853539 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.64359 -38.29947 -37.75288 -36.41588 -34.05275 -32.34869 -31.19909 -30.41577 -28.52410 -27.31497 -27.10574 -25.68274 -23.71101 -22.60818 -22.17842 -20.68806 -20.52987 -18.24360 -17.43527 -17.07636 -16.54781 -16.12913 -15.61412 -15.17050 -14.80804 -14.67508 -14.38840 -14.12185 -13.79120 -13.48750 -13.26097 -12.98220 -12.89757 -12.56754 -12.23598 -12.00503 -11.82660 -11.76792 -11.45720 -11.31370 -11.27108 -11.07478 -10.89618 -10.74845 -10.56927 -10.35973 -10.17918 -9.72024 -9.56392 -9.43985 -9.06894 -8.55925 -7.62866 -6.87215 -6.01348 -3.51056 1.53254 1.57897 3.21246 3.27583 3.42887 3.43462 3.46699 4.07422 4.47573 4.75706 4.92341 4.99009 5.13864 5.15922 5.23783 5.31897 5.36075 5.41394 5.42642 5.47369 5.48221 5.50348 5.55772 5.61332 5.76857 5.86600 6.08715 6.11860 6.15544 6.21359 6.28231 6.31171 6.44918 6.46277 6.60071 6.69540 6.75140 6.87623 7.06743 7.11389 7.65303 8.02789 8.20548 8.34305 8.91736 9.65430 10.04345 11.13308 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.014767 B = 0.005666 C = 0.004741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1895.650986 B = 4940.716657 C = 5904.336301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.125 4.125 3 C -0.137 4.137 4 C 0.137 3.863 5 N -0.597 5.597 6 C -0.270 4.270 7 H 0.080 0.920 8 C 0.039 3.961 9 N -0.902 5.902 10 Si 0.887 3.113 11 H -0.287 1.287 12 H -0.303 1.303 13 H -0.269 1.269 14 C 0.188 3.812 15 C -0.123 4.123 16 C 0.119 3.881 17 N -0.506 5.506 18 C 0.281 3.719 19 O -0.306 6.306 20 C 0.042 3.958 21 C 0.055 3.945 22 O -0.307 6.307 23 C 0.027 3.973 24 C -0.128 4.128 25 H 0.046 0.954 26 H 0.048 0.952 27 H 0.053 0.947 28 H 0.057 0.943 29 H 0.052 0.948 30 H 0.054 0.946 31 H 0.066 0.934 32 H 0.051 0.949 33 H 0.036 0.964 34 H 0.263 0.737 35 H 0.072 0.928 36 H 0.048 0.952 37 H 0.163 0.837 38 H 0.055 0.945 39 H 0.057 0.943 40 H 0.090 0.910 41 H 0.055 0.945 42 H 0.053 0.947 43 H 0.097 0.903 44 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.261 -1.157 13.953 15.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.164 4.164 3 C -0.177 4.177 4 C 0.012 3.988 5 N -0.318 5.318 6 C -0.399 4.399 7 H 0.097 0.903 8 C -0.162 4.162 9 N -0.542 5.542 10 Si 0.719 3.281 11 H -0.215 1.215 12 H -0.232 1.232 13 H -0.194 1.194 14 C 0.061 3.939 15 C -0.129 4.129 16 C -0.036 4.036 17 N -0.229 5.229 18 C 0.101 3.899 19 O -0.214 6.214 20 C -0.053 4.053 21 C 0.007 3.993 22 O -0.220 6.220 23 C -0.069 4.069 24 C -0.155 4.155 25 H 0.065 0.935 26 H 0.067 0.933 27 H 0.072 0.928 28 H 0.076 0.924 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.084 0.916 32 H 0.069 0.931 33 H 0.055 0.945 34 H 0.073 0.927 35 H 0.091 0.909 36 H 0.066 0.934 37 H 0.180 0.820 38 H 0.074 0.926 39 H 0.075 0.925 40 H 0.108 0.892 41 H 0.073 0.927 42 H 0.071 0.929 43 H 0.116 0.884 44 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -7.750 -0.334 13.668 15.716 hybrid contribution 0.703 -1.806 0.017 1.938 sum -7.047 -2.140 13.685 15.541 Atomic orbital electron populations 1.21746 0.96498 1.00622 1.01638 1.21535 0.95309 0.98329 1.01196 1.22199 0.98546 0.94695 1.02228 1.21235 0.92073 0.86667 0.98793 1.44101 1.75150 1.10883 1.01667 1.18731 1.35966 0.97412 0.87768 0.90288 1.25474 0.97309 0.98044 0.95397 1.69820 1.45643 1.40232 0.98552 0.86768 0.79259 0.84238 0.77869 1.21520 1.23183 1.19423 1.19790 0.90799 0.95115 0.88233 1.21762 1.00479 0.95308 0.95304 1.22267 0.92227 0.92152 0.96996 1.67394 1.05119 1.36856 1.13514 1.19016 0.88592 0.88169 0.94161 1.86267 1.37649 1.31029 1.66408 1.22769 1.01527 0.82013 0.99004 1.18885 0.92037 0.92277 0.96092 1.86145 1.45261 1.32334 1.58216 1.23036 1.02086 0.82755 0.99009 1.21361 0.93513 1.00320 1.00275 0.93472 0.93259 0.92809 0.92408 0.92873 0.92771 0.91562 0.93112 0.94513 0.92664 0.90943 0.93375 0.81996 0.92644 0.92476 0.89191 0.92679 0.92883 0.88447 0.84390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 9.91 37.16 0.37 -1.65 16 2 C -0.13 -1.95 5.93 -26.73 -0.16 -2.11 16 3 C -0.14 -2.55 5.54 -26.73 -0.15 -2.70 16 4 C 0.14 2.81 4.47 -4.04 -0.02 2.80 16 5 N -0.60 -13.12 2.05 -174.61 -0.36 -13.48 16 6 C -0.27 -7.10 9.95 -15.06 -0.15 -7.25 16 7 H 0.08 2.24 8.05 -52.49 -0.42 1.82 16 8 C 0.04 1.07 5.38 -17.43 -0.09 0.97 16 9 N -0.90 -26.82 13.97 55.49 0.78 -26.05 16 10 Si 0.89 21.67 24.77 -169.99 -4.21 17.46 16 11 H -0.29 -6.88 6.76 56.52 0.38 -6.50 16 12 H -0.30 -7.59 7.11 56.52 0.40 -7.19 16 13 H -0.27 -6.34 7.07 56.52 0.40 -5.94 16 14 C 0.19 3.40 5.86 -5.20 -0.03 3.37 16 15 C -0.12 -2.13 5.30 -104.49 -0.55 -2.69 16 16 C 0.12 2.14 10.86 -17.55 -0.19 1.95 16 17 N -0.51 -9.16 9.22 -13.21 -0.12 -9.28 16 18 C 0.28 4.98 7.50 -16.99 -0.13 4.85 16 19 O -0.31 -5.06 10.27 -33.39 -0.34 -5.40 16 20 C 0.04 0.54 10.38 101.05 1.05 1.59 16 21 C 0.05 0.90 6.72 -38.96 -0.26 0.64 16 22 O -0.31 -4.63 10.29 -34.12 -0.35 -4.98 16 23 C 0.03 0.28 9.83 101.05 0.99 1.27 16 24 C -0.13 -2.00 6.89 -39.17 -0.27 -2.27 16 25 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 26 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.05 0.77 8.14 -51.92 -0.42 0.35 16 28 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.05 0.96 5.87 -51.93 -0.30 0.66 16 31 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 32 H 0.05 1.16 3.14 -51.93 -0.16 1.00 16 33 H 0.04 0.67 7.89 -51.92 -0.41 0.26 16 34 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 35 H 0.07 1.30 8.02 -51.93 -0.42 0.88 16 36 H 0.05 0.77 7.81 -51.93 -0.41 0.36 16 37 H 0.16 2.89 8.05 -52.48 -0.42 2.47 16 38 H 0.05 0.68 8.11 -51.93 -0.42 0.26 16 39 H 0.06 0.75 8.10 -51.92 -0.42 0.33 16 40 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.05 0.56 7.70 -51.93 -0.40 0.16 16 42 H 0.05 0.49 7.70 -51.93 -0.40 0.09 16 43 H 0.10 0.78 8.14 -51.92 -0.42 0.35 16 44 H 0.14 1.85 6.43 -52.49 -0.34 1.52 16 LS Contribution 356.37 15.07 5.37 5.37 Total: -1.00 -31.04 356.37 -5.89 -36.93 By element: Atomic # 1 Polarization: 7.71 SS G_CDS: -7.06 Total: 0.65 kcal Atomic # 6 Polarization: -1.62 SS G_CDS: 0.41 Total: -1.21 kcal Atomic # 7 Polarization: -49.11 SS G_CDS: 0.30 Total: -48.81 kcal Atomic # 8 Polarization: -9.69 SS G_CDS: -0.69 Total: -10.39 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -4.21 Total: 17.46 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -31.04 -5.89 -36.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001209620122.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.790 kcal (2) G-P(sol) polarization free energy of solvation -31.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds