Wall clock time and date at job start Tue Mar 31 2020 07:24:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53009 * 109.46989 * 2 1 4 4 C 1.52999 * 109.46989 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.47008 * 180.02562 * 4 3 2 6 6 C 1.36942 * 119.99506 * 269.99739 * 5 4 3 7 7 H 1.07998 * 120.00076 * 140.31921 * 6 5 4 8 8 C 1.38809 * 120.00125 * 320.31978 * 6 5 4 9 9 N 1.31619 * 119.99994 * 163.05487 * 8 6 5 10 10 Si 1.86799 * 120.00040 * 343.05703 * 8 6 5 11 11 H 1.48503 * 109.47209 * 95.54663 * 10 8 6 12 12 H 1.48505 * 109.46976 * 215.54504 * 10 8 6 13 13 H 1.48500 * 109.47306 * 335.54328 * 10 8 6 14 14 C 1.46500 * 120.00460 * 89.99814 * 5 4 3 15 15 C 1.50696 * 109.46766 * 269.99376 * 14 5 4 16 16 C 1.38052 * 120.33329 * 275.40163 * 15 14 5 17 17 N 1.31991 * 120.93660 * 179.75417 * 16 15 14 18 18 C 1.32162 * 121.70551 * 0.56003 * 17 16 15 19 19 O 1.35763 * 119.71609 * 179.71540 * 18 17 16 20 20 C 1.42895 * 117.00274 * 359.72747 * 19 18 17 21 21 C 1.39353 * 120.56758 * 359.44101 * 18 17 16 22 22 O 1.35999 * 120.49032 * 180.29500 * 21 18 17 23 23 C 1.42899 * 116.99557 * 180.02562 * 22 21 18 24 24 C 1.38780 * 120.33330 * 95.43053 * 15 14 5 25 25 H 1.09000 * 109.46884 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47109 * 299.99822 * 1 2 3 27 27 H 1.09008 * 109.46954 * 60.00279 * 1 2 3 28 28 H 1.08996 * 109.47560 * 240.00114 * 2 1 3 29 29 H 1.09002 * 109.47613 * 119.99868 * 2 1 3 30 30 H 1.09000 * 109.47049 * 60.00141 * 3 2 1 31 31 H 1.09000 * 109.46713 * 299.99807 * 3 2 1 32 32 H 1.08996 * 109.47560 * 60.00114 * 4 3 2 33 33 H 1.09009 * 109.47332 * 300.00101 * 4 3 2 34 34 H 0.97005 * 120.00329 * 179.97438 * 9 8 6 35 35 H 1.08994 * 109.46841 * 149.99034 * 14 5 4 36 36 H 1.09002 * 109.46736 * 29.99337 * 14 5 4 37 37 H 1.08005 * 119.53298 * 0.04626 * 16 15 14 38 38 H 1.08996 * 109.47105 * 300.00250 * 20 19 18 39 39 H 1.09010 * 109.46934 * 60.00166 * 20 19 18 40 40 H 1.09001 * 109.47373 * 179.97438 * 20 19 18 41 41 H 1.08997 * 109.47449 * 299.99604 * 23 22 21 42 42 H 1.09002 * 109.47092 * 60.00596 * 23 22 21 43 43 H 1.09007 * 109.46485 * 180.02562 * 23 22 21 44 44 H 1.07998 * 120.78482 * 359.97438 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 7 4.0583 2.8238 0.0013 6 6 4.2870 3.4696 -1.1845 7 1 4.0218 4.5110 -1.2921 8 6 4.8598 2.7858 -2.2480 9 7 4.7796 3.2775 -3.4663 10 14 5.7442 1.1676 -1.9503 11 1 4.8117 0.0399 -2.2034 12 1 6.9075 1.0633 -2.8675 13 1 6.2166 1.1132 -0.5435 14 6 4.3019 3.5142 1.2702 15 6 3.0459 4.2245 1.7047 16 6 2.7548 5.4845 1.2214 17 7 1.6557 6.1155 1.5902 18 6 0.7981 5.5779 2.4400 19 8 -0.3171 6.2655 2.7961 20 6 -0.4926 7.5608 2.2189 21 6 1.0257 4.3091 2.9692 22 8 0.1391 3.7549 3.8390 23 6 0.4467 2.4509 4.3359 24 6 2.1705 3.6190 2.5953 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8901 28 1 1.8934 -0.5138 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 1.6767 1.9564 0.8900 31 1 1.6766 1.9563 -0.8900 32 1 3.9337 0.9287 -0.8891 33 1 3.9330 0.9288 0.8909 34 1 5.1801 2.7999 -4.2095 35 1 5.1039 4.2407 1.1404 36 1 4.5896 2.7873 2.0298 37 1 3.4336 5.9586 0.5279 38 1 0.3461 8.1991 2.4967 39 1 -0.5376 7.4719 1.1334 40 1 -1.4206 7.9995 2.5859 41 1 0.5158 1.7515 3.5028 42 1 1.3985 2.4794 4.8664 43 1 -0.3400 2.1271 5.0175 44 1 2.3752 2.6340 2.9881 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001209620122.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:24:53 Heat of formation + Delta-G solvation = -42.598096 kcal Electronic energy + Delta-G solvation = -24893.260473 eV Core-core repulsion = 21425.519930 eV Total energy + Delta-G solvation = -3467.740542 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.91039 -39.44982 -39.10659 -37.92882 -35.45229 -34.10685 -32.80929 -31.68641 -29.86535 -28.54230 -28.11168 -27.25932 -25.25571 -23.86046 -23.59696 -22.15937 -21.99807 -19.48380 -18.87181 -18.36065 -18.20813 -17.45818 -17.23878 -16.26930 -16.16159 -15.97132 -15.73745 -15.61337 -15.09938 -14.86030 -14.53474 -14.41829 -14.32151 -14.17475 -13.54839 -13.38265 -13.33315 -12.91129 -12.83166 -12.76390 -12.47777 -12.29836 -12.13751 -12.08814 -11.95725 -11.91690 -11.68718 -11.51105 -11.25397 -10.81780 -10.66981 -10.27295 -8.95924 -8.67853 -8.13207 -5.59168 0.23240 0.24421 1.34322 1.44709 1.55656 2.07087 2.35096 2.46047 2.70707 3.13401 3.44512 3.51324 3.77931 3.99575 4.07652 4.12439 4.18126 4.24454 4.35745 4.40797 4.42956 4.43987 4.45897 4.48853 4.71668 4.73168 4.74539 4.77866 4.88367 4.92827 4.97572 5.00472 5.07999 5.11645 5.31855 5.35812 5.41813 5.44933 5.56434 5.98603 6.01023 6.24674 6.43813 6.87372 7.02845 7.65875 8.06757 9.05598 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.014767 B = 0.005666 C = 0.004741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1895.650986 B = 4940.716657 C = 5904.336301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.122 4.122 3 C -0.127 4.127 4 C 0.130 3.870 5 N -0.608 5.608 6 C -0.248 4.248 7 H 0.041 0.959 8 C -0.023 4.023 9 N -0.956 5.956 10 Si 0.952 3.048 11 H -0.281 1.281 12 H -0.317 1.317 13 H -0.247 1.247 14 C 0.187 3.813 15 C -0.127 4.127 16 C 0.098 3.902 17 N -0.519 5.519 18 C 0.263 3.737 19 O -0.317 6.317 20 C 0.039 3.961 21 C 0.058 3.942 22 O -0.320 6.320 23 C 0.015 3.985 24 C -0.118 4.118 25 H 0.070 0.930 26 H 0.058 0.942 27 H 0.035 0.965 28 H 0.046 0.954 29 H 0.083 0.917 30 H 0.064 0.936 31 H 0.021 0.979 32 H 0.028 0.972 33 H 0.075 0.925 34 H 0.260 0.740 35 H 0.067 0.933 36 H 0.085 0.915 37 H 0.149 0.851 38 H 0.055 0.945 39 H 0.046 0.954 40 H 0.125 0.875 41 H 0.061 0.939 42 H 0.069 0.931 43 H 0.123 0.877 44 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.903 -3.661 17.247 19.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.160 4.160 3 C -0.166 4.166 4 C 0.006 3.994 5 N -0.329 5.329 6 C -0.378 4.378 7 H 0.059 0.941 8 C -0.219 4.219 9 N -0.601 5.601 10 Si 0.781 3.219 11 H -0.209 1.209 12 H -0.246 1.246 13 H -0.170 1.170 14 C 0.062 3.938 15 C -0.132 4.132 16 C -0.056 4.056 17 N -0.243 5.243 18 C 0.082 3.918 19 O -0.225 6.225 20 C -0.056 4.056 21 C 0.009 3.991 22 O -0.234 6.234 23 C -0.080 4.080 24 C -0.144 4.144 25 H 0.089 0.911 26 H 0.077 0.923 27 H 0.055 0.945 28 H 0.065 0.935 29 H 0.101 0.899 30 H 0.083 0.917 31 H 0.040 0.960 32 H 0.046 0.954 33 H 0.093 0.907 34 H 0.069 0.931 35 H 0.085 0.915 36 H 0.103 0.897 37 H 0.167 0.833 38 H 0.074 0.926 39 H 0.065 0.935 40 H 0.143 0.857 41 H 0.080 0.920 42 H 0.088 0.912 43 H 0.141 0.859 44 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -8.406 -2.847 17.024 19.199 hybrid contribution 0.750 -0.928 -0.891 1.489 sum -7.656 -3.776 16.133 18.253 Atomic orbital electron populations 1.21722 0.95200 1.02053 1.01281 1.21521 0.96474 0.95937 1.02093 1.22055 0.97370 0.96687 1.00510 1.21381 0.93127 0.85541 0.99363 1.44194 1.75613 1.11560 1.01533 1.18592 1.33704 0.96036 0.89449 0.94100 1.26127 0.98765 1.01953 0.95029 1.69974 1.47998 1.42498 0.99616 0.85721 0.77435 0.80286 0.78412 1.20861 1.24610 1.17009 1.19922 0.91061 0.95665 0.87186 1.21613 1.00581 0.94915 0.96062 1.22217 0.92576 0.93150 0.97696 1.67317 1.05346 1.37504 1.14166 1.19366 0.88844 0.89166 0.94376 1.86255 1.37187 1.32318 1.66710 1.22995 1.03318 0.80790 0.98489 1.18965 0.92305 0.91911 0.95872 1.86143 1.45081 1.34521 1.57615 1.23423 1.04150 0.80609 0.99772 1.21574 0.92445 1.01183 0.99200 0.91147 0.92324 0.94528 0.93548 0.89881 0.91707 0.96036 0.95421 0.90711 0.93103 0.91476 0.89704 0.83325 0.92594 0.93520 0.85692 0.91998 0.91193 0.85865 0.81277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.55 9.91 71.98 0.71 -2.84 16 2 C -0.12 -3.40 5.93 30.60 0.18 -3.22 16 3 C -0.13 -4.47 5.54 30.60 0.17 -4.30 16 4 C 0.13 4.99 4.47 86.38 0.39 5.37 16 5 N -0.61 -26.01 2.05 -706.35 -1.45 -27.46 16 6 C -0.25 -13.36 9.95 84.03 0.84 -12.53 16 7 H 0.04 2.48 8.05 -2.91 -0.02 2.45 16 8 C -0.02 -1.31 5.38 84.86 0.46 -0.86 16 9 N -0.96 -59.49 13.97 21.65 0.30 -59.18 16 10 Si 0.95 44.98 24.77 68.60 1.70 46.68 16 11 H -0.28 -12.85 6.76 99.48 0.67 -12.17 16 12 H -0.32 -15.49 7.11 99.48 0.71 -14.78 16 13 H -0.25 -10.59 7.07 99.48 0.70 -9.89 16 14 C 0.19 6.41 5.86 85.63 0.50 6.92 16 15 C -0.13 -4.23 5.30 -19.78 -0.10 -4.33 16 16 C 0.10 3.64 10.86 84.62 0.92 4.56 16 17 N -0.52 -19.20 9.22 -308.57 -2.84 -22.04 16 18 C 0.26 9.20 7.50 84.91 0.64 9.84 16 19 O -0.32 -10.26 10.27 -77.14 -0.79 -11.05 16 20 C 0.04 0.97 10.38 113.37 1.18 2.15 16 21 C 0.06 1.79 6.72 22.67 0.15 1.94 16 22 O -0.32 -8.73 10.29 -79.78 -0.82 -9.55 16 23 C 0.01 0.24 9.83 113.37 1.11 1.36 16 24 C -0.12 -3.34 6.89 22.54 0.16 -3.19 16 25 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 26 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 27 H 0.04 1.00 8.14 -2.38 -0.02 0.98 16 28 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 30 H 0.06 2.12 5.87 -2.39 -0.01 2.10 16 31 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.03 1.21 3.14 -2.39 -0.01 1.20 16 33 H 0.07 2.32 7.89 -2.38 -0.02 2.30 16 34 H 0.26 15.45 8.31 -92.70 -0.77 14.68 16 35 H 0.07 2.35 8.02 -2.39 -0.02 2.33 16 36 H 0.08 2.32 7.81 -2.39 -0.02 2.30 16 37 H 0.15 5.73 8.05 -2.91 -0.02 5.70 16 38 H 0.06 1.37 8.11 -2.39 -0.02 1.35 16 39 H 0.05 1.25 8.10 -2.38 -0.02 1.23 16 40 H 0.13 2.18 8.14 -2.39 -0.02 2.16 16 41 H 0.06 0.96 7.70 -2.39 -0.02 0.94 16 42 H 0.07 0.94 7.70 -2.39 -0.02 0.92 16 43 H 0.12 1.39 8.14 -2.38 -0.02 1.37 16 44 H 0.17 3.66 6.43 -2.91 -0.02 3.64 16 Total: -1.00 -70.43 356.37 4.33 -66.10 By element: Atomic # 1 Polarization: 14.68 SS G_CDS: 0.94 Total: 15.62 kcal Atomic # 6 Polarization: -6.41 SS G_CDS: 7.30 Total: 0.89 kcal Atomic # 7 Polarization: -104.70 SS G_CDS: -3.99 Total: -108.69 kcal Atomic # 8 Polarization: -18.99 SS G_CDS: -1.61 Total: -20.60 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 1.70 Total: 46.68 kcal Total: -70.43 4.33 -66.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001209620122.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.501 kcal (2) G-P(sol) polarization free energy of solvation -70.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds