Wall clock time and date at job start Tue Mar 31 2020 07:18:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32874 * 1 3 3 C 1.47116 * 120.00414 * 2 1 4 4 C 1.50705 * 119.99663 * 359.97438 * 3 2 1 5 5 C 1.32861 * 120.00393 * 180.02562 * 3 2 1 6 6 C 1.50705 * 120.00278 * 174.08427 * 5 3 2 7 7 C 1.50702 * 109.47126 * 234.27593 * 6 5 3 8 8 O 1.21281 * 120.00126 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99700 * 179.97438 * 7 6 5 10 10 C 1.46501 * 119.99853 * 180.02562 * 9 7 6 11 11 H 1.09001 * 110.88591 * 37.42581 * 10 9 7 12 12 C 1.54909 * 111.00467 * 273.55282 * 10 9 7 13 13 N 1.47428 * 104.83166 * 204.87972 * 12 10 9 14 14 C 1.36933 * 125.64753 * 204.16393 * 13 12 10 15 15 H 1.08004 * 119.99905 * 359.97378 * 14 13 12 16 16 C 1.38815 * 120.00134 * 179.97438 * 14 13 12 17 17 N 1.31614 * 119.99625 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 119.99938 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47343 * 89.99994 * 18 16 14 20 20 H 1.48501 * 109.46529 * 209.99636 * 18 16 14 21 21 H 1.48499 * 109.47255 * 329.99431 * 18 16 14 22 22 C 1.47015 * 108.70317 * 24.12408 * 13 12 10 23 23 C 1.54323 * 107.40404 * 358.86678 * 22 13 12 24 24 H 1.08994 * 110.72270 * 96.24673 * 23 22 13 25 25 O 1.42898 * 110.72222 * 219.52520 * 23 22 13 26 26 C 1.42905 * 113.99503 * 268.54314 * 25 23 22 27 27 H 1.08002 * 119.99419 * 0.02562 * 1 2 3 28 28 H 1.07994 * 119.99700 * 180.02562 * 1 2 3 29 29 H 1.08000 * 119.99659 * 180.02562 * 2 1 3 30 30 H 1.08998 * 109.47449 * 265.16232 * 4 3 2 31 31 H 1.08994 * 109.47155 * 25.16247 * 4 3 2 32 32 H 1.09001 * 109.46815 * 145.16099 * 4 3 2 33 33 H 1.08004 * 119.99935 * 354.08198 * 5 3 2 34 34 H 1.08998 * 109.47128 * 114.27670 * 6 5 3 35 35 H 1.09001 * 109.46932 * 354.27916 * 6 5 3 36 36 H 0.97001 * 120.00128 * 0.02562 * 9 7 6 37 37 H 1.09001 * 110.37166 * 86.03556 * 12 10 9 38 38 H 1.09008 * 110.45916 * 323.76250 * 12 10 9 39 39 H 0.96999 * 120.00045 * 180.02562 * 17 16 14 40 40 H 1.08999 * 109.88474 * 118.36159 * 22 13 12 41 41 H 1.08999 * 109.88502 * 239.37477 * 22 13 12 42 42 H 1.08998 * 109.47480 * 60.00380 * 26 25 23 43 43 H 1.09005 * 109.47001 * 179.97438 * 26 25 23 44 44 H 1.08998 * 109.47278 * 299.99796 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3287 0.0000 0.0000 3 6 2.0644 1.2740 0.0000 4 6 1.3109 2.5792 -0.0006 5 6 3.3930 1.2740 -0.0005 6 6 4.1466 2.5722 -0.1350 7 6 5.1157 2.4736 -1.2848 8 8 5.1872 1.4502 -1.9317 9 7 5.9024 3.5232 -1.5949 10 6 6.8441 3.4276 -2.7130 11 1 6.4136 2.8572 -3.5361 12 6 8.1895 2.8116 -2.2547 13 7 9.1838 3.3164 -3.2191 14 6 10.3779 2.7183 -3.5211 15 1 10.6578 1.7954 -3.0348 16 6 11.2288 3.2980 -4.4521 17 7 10.8875 4.4224 -5.0450 18 14 12.8576 2.4816 -4.8646 19 1 12.6662 1.5386 -5.9956 20 1 13.8484 3.5194 -5.2475 21 1 13.3529 1.7380 -3.6784 22 6 8.6804 4.5680 -3.8036 23 6 7.2904 4.8378 -3.1897 24 1 7.3680 5.5230 -2.3457 25 8 6.3923 5.3488 -4.1768 26 6 6.3700 6.7753 -4.2593 27 1 -0.5399 0.9354 -0.0004 28 1 -0.5399 -0.9353 0.0004 29 1 1.8687 -0.9353 -0.0004 30 1 1.2047 2.9370 -1.0247 31 1 0.3236 2.4289 0.4360 32 1 1.8595 3.3156 0.5866 33 1 3.9331 0.3436 0.0955 34 1 4.6945 2.7713 0.7859 35 1 3.4426 3.3832 -0.3216 36 1 5.8449 4.3419 -1.0778 37 1 8.1414 1.7233 -2.2940 38 1 8.4367 3.1435 -1.2462 39 1 11.4818 4.8274 -5.6959 40 1 9.3572 5.3879 -3.5633 41 1 8.5939 4.4636 -4.8851 42 1 7.3658 7.1404 -4.5108 43 1 5.6648 7.0836 -5.0312 44 1 6.0627 7.1900 -3.2993 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001213285662.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:18:07 Heat of formation + Delta-G solvation = -18.900534 kcal Electronic energy + Delta-G solvation = -23626.524091 eV Core-core repulsion = 20159.811152 eV Total energy + Delta-G solvation = -3466.712939 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.77269 -38.24429 -36.97281 -35.87105 -34.00953 -32.65094 -31.69553 -29.26552 -28.58287 -27.33758 -26.35910 -26.13124 -24.15560 -21.70734 -20.54772 -20.34661 -19.77747 -18.01297 -17.44053 -16.85474 -16.39225 -16.06044 -15.56262 -14.92095 -14.82136 -14.40884 -14.25650 -14.18101 -13.80032 -13.38456 -13.26294 -13.15110 -12.64307 -12.58648 -12.23467 -11.90700 -11.77062 -11.65567 -11.46901 -11.22552 -11.02628 -11.00529 -10.80036 -10.74997 -10.66637 -10.14531 -9.98135 -9.79617 -9.70102 -9.08997 -8.76319 -8.58601 -8.34646 -6.88761 -5.73325 -3.08180 1.19462 2.81296 2.86757 3.40124 3.42889 3.46319 3.48212 4.12695 4.50061 4.51938 4.69916 4.84984 5.06210 5.11328 5.14823 5.22534 5.28265 5.39692 5.45859 5.48792 5.52131 5.57311 5.65084 5.66981 5.71781 5.82152 5.86457 5.93349 6.05885 6.16769 6.20461 6.33161 6.52565 6.55662 6.65207 6.79450 6.87442 7.25007 7.47661 7.69155 7.73008 7.85737 8.20448 8.44709 9.17744 9.77830 10.41042 11.38201 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.021190 B = 0.003216 C = 0.002885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.039974 B = 8703.619858 C = 9702.867428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.111 4.111 3 C -0.116 4.116 4 C -0.122 4.122 5 C -0.111 4.111 6 C -0.118 4.118 7 C 0.516 3.484 8 O -0.534 6.534 9 N -0.718 5.718 10 C 0.135 3.865 11 H 0.103 0.897 12 C 0.131 3.869 13 N -0.600 5.600 14 C -0.228 4.228 15 H 0.081 0.919 16 C -0.008 4.008 17 N -0.923 5.923 18 Si 0.915 3.085 19 H -0.288 1.288 20 H -0.290 1.290 21 H -0.281 1.281 22 C 0.163 3.837 23 C 0.056 3.944 24 H 0.062 0.938 25 O -0.379 6.379 26 C 0.034 3.966 27 H 0.101 0.899 28 H 0.099 0.901 29 H 0.114 0.886 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.119 0.881 34 H 0.103 0.897 35 H 0.101 0.899 36 H 0.396 0.604 37 H 0.050 0.950 38 H 0.023 0.977 39 H 0.253 0.747 40 H 0.048 0.952 41 H 0.062 0.938 42 H 0.046 0.954 43 H 0.079 0.921 44 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.855 1.796 11.400 21.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.129 4.129 3 C -0.116 4.116 4 C -0.179 4.179 5 C -0.130 4.130 6 C -0.158 4.158 7 C 0.301 3.699 8 O -0.410 6.410 9 N -0.369 5.369 10 C 0.030 3.970 11 H 0.121 0.879 12 C 0.004 3.996 13 N -0.328 5.328 14 C -0.356 4.356 15 H 0.099 0.901 16 C -0.204 4.204 17 N -0.571 5.571 18 Si 0.745 3.255 19 H -0.215 1.215 20 H -0.217 1.217 21 H -0.206 1.206 22 C 0.038 3.962 23 C -0.003 4.003 24 H 0.080 0.920 25 O -0.297 6.297 26 C -0.063 4.063 27 H 0.119 0.881 28 H 0.117 0.883 29 H 0.132 0.868 30 H 0.086 0.914 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.137 0.863 34 H 0.121 0.879 35 H 0.119 0.881 36 H 0.229 0.771 37 H 0.069 0.931 38 H 0.040 0.960 39 H 0.063 0.937 40 H 0.066 0.934 41 H 0.080 0.920 42 H 0.065 0.935 43 H 0.097 0.903 44 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -17.725 0.983 10.658 20.706 hybrid contribution 1.058 0.280 0.093 1.099 sum -16.666 1.263 10.751 19.873 Atomic orbital electron populations 1.24376 0.95704 1.01905 1.01104 1.21870 0.95288 0.96142 0.99566 1.20526 0.93897 0.94334 1.02878 1.20887 1.00115 0.94582 1.02298 1.22811 0.93841 0.97920 0.98405 1.20818 0.98280 0.98398 0.98265 1.20426 0.80785 0.83489 0.85162 1.90727 1.68379 1.29575 1.52316 1.45964 1.40138 1.16438 1.34351 1.22380 0.89678 0.96358 0.88612 0.87944 1.21823 0.86889 0.97846 0.93065 1.44259 1.17966 1.24361 1.46241 1.19082 0.92295 1.04890 1.19308 0.90144 1.24821 0.99058 0.97518 0.99000 1.69936 1.37038 1.19296 1.30800 0.86072 0.82962 0.78177 0.78280 1.21482 1.21670 1.20636 1.21579 0.87371 0.89302 0.97973 1.23857 0.92628 0.93383 0.90461 0.91965 1.87903 1.63024 1.20202 1.58558 1.22701 1.01522 0.81738 1.00290 0.88125 0.88260 0.86796 0.91375 0.91579 0.91383 0.86277 0.87902 0.88122 0.77067 0.93132 0.95971 0.93670 0.93417 0.91984 0.93526 0.90265 0.94845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.59 14.12 28.88 0.41 -1.19 16 2 C -0.11 -1.08 9.83 -37.83 -0.37 -1.45 16 3 C -0.12 -1.19 5.98 -102.87 -0.62 -1.80 16 4 C -0.12 -0.98 8.54 36.01 0.31 -0.68 16 5 C -0.11 -1.25 8.45 -36.16 -0.31 -1.55 16 6 C -0.12 -1.19 5.77 -29.03 -0.17 -1.36 16 7 C 0.52 7.63 7.82 -10.98 -0.09 7.54 16 8 O -0.53 -10.37 15.78 5.56 0.09 -10.29 16 9 N -0.72 -10.33 5.23 -51.60 -0.27 -10.60 16 10 C 0.14 2.55 3.05 -65.65 -0.20 2.35 16 11 H 0.10 2.24 7.73 -51.93 -0.40 1.84 16 12 C 0.13 2.84 6.93 -2.53 -0.02 2.82 16 13 N -0.60 -15.61 3.39 -170.07 -0.58 -16.19 16 14 C -0.23 -6.44 10.28 -15.06 -0.15 -6.60 16 15 H 0.08 2.20 7.83 -52.48 -0.41 1.79 16 16 C -0.01 -0.22 5.49 -17.43 -0.10 -0.32 16 17 N -0.92 -27.14 10.31 55.49 0.57 -26.57 16 18 Si 0.91 22.31 29.55 -169.99 -5.02 17.28 16 19 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 20 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 21 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 22 C 0.16 3.98 5.14 -3.07 -0.02 3.96 16 23 C 0.06 1.05 3.04 -24.76 -0.08 0.97 16 24 H 0.06 1.02 7.75 -51.93 -0.40 0.62 16 25 O -0.38 -6.96 10.44 -35.23 -0.37 -7.32 16 26 C 0.03 0.48 10.88 101.05 1.10 1.58 16 27 H 0.10 0.73 6.06 -52.49 -0.32 0.42 16 28 H 0.10 0.68 8.06 -52.49 -0.42 0.26 16 29 H 0.11 1.06 8.06 -52.49 -0.42 0.64 16 30 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.07 0.46 6.19 -51.93 -0.32 0.13 16 32 H 0.07 0.46 6.70 -51.93 -0.35 0.11 16 33 H 0.12 1.43 8.05 -52.48 -0.42 1.00 16 34 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.10 0.82 5.79 -51.93 -0.30 0.52 16 36 H 0.40 4.33 8.52 -40.82 -0.35 3.98 16 37 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 38 H 0.02 0.46 8.14 -51.92 -0.42 0.04 16 39 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 40 H 0.05 1.25 7.51 -51.93 -0.39 0.86 16 41 H 0.06 1.72 7.28 -51.93 -0.38 1.35 16 42 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 43 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 44 H 0.03 0.39 8.11 -51.93 -0.42 -0.03 16 LS Contribution 362.15 15.07 5.46 5.46 Total: -1.00 -33.69 362.15 -7.39 -41.08 By element: Atomic # 1 Polarization: 9.83 SS G_CDS: -6.98 Total: 2.85 kcal Atomic # 6 Polarization: 4.59 SS G_CDS: -0.29 Total: 4.30 kcal Atomic # 7 Polarization: -53.08 SS G_CDS: -0.28 Total: -53.36 kcal Atomic # 8 Polarization: -17.33 SS G_CDS: -0.28 Total: -17.61 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -33.69 -7.39 -41.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001213285662.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.180 kcal (2) G-P(sol) polarization free energy of solvation -33.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds