Wall clock time and date at job start Tue Mar 31 2020 07:18:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32874 * 1 3 3 C 1.47116 * 120.00414 * 2 1 4 4 C 1.50705 * 119.99663 * 359.97438 * 3 2 1 5 5 C 1.32861 * 120.00393 * 180.02562 * 3 2 1 6 6 C 1.50705 * 120.00278 * 174.08427 * 5 3 2 7 7 C 1.50702 * 109.47126 * 234.27593 * 6 5 3 8 8 O 1.21281 * 120.00126 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99700 * 179.97438 * 7 6 5 10 10 C 1.46501 * 119.99853 * 180.02562 * 9 7 6 11 11 H 1.09001 * 110.88591 * 37.42581 * 10 9 7 12 12 C 1.54909 * 111.00467 * 273.55282 * 10 9 7 13 13 N 1.47428 * 104.83166 * 204.87972 * 12 10 9 14 14 C 1.36933 * 125.64753 * 204.16393 * 13 12 10 15 15 H 1.08004 * 119.99905 * 359.97378 * 14 13 12 16 16 C 1.38815 * 120.00134 * 179.97438 * 14 13 12 17 17 N 1.31614 * 119.99625 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 119.99938 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47343 * 89.99994 * 18 16 14 20 20 H 1.48501 * 109.46529 * 209.99636 * 18 16 14 21 21 H 1.48499 * 109.47255 * 329.99431 * 18 16 14 22 22 C 1.47015 * 108.70317 * 24.12408 * 13 12 10 23 23 C 1.54323 * 107.40404 * 358.86678 * 22 13 12 24 24 H 1.08994 * 110.72270 * 96.24673 * 23 22 13 25 25 O 1.42898 * 110.72222 * 219.52520 * 23 22 13 26 26 C 1.42905 * 113.99503 * 268.54314 * 25 23 22 27 27 H 1.08002 * 119.99419 * 0.02562 * 1 2 3 28 28 H 1.07994 * 119.99700 * 180.02562 * 1 2 3 29 29 H 1.08000 * 119.99659 * 180.02562 * 2 1 3 30 30 H 1.08998 * 109.47449 * 265.16232 * 4 3 2 31 31 H 1.08994 * 109.47155 * 25.16247 * 4 3 2 32 32 H 1.09001 * 109.46815 * 145.16099 * 4 3 2 33 33 H 1.08004 * 119.99935 * 354.08198 * 5 3 2 34 34 H 1.08998 * 109.47128 * 114.27670 * 6 5 3 35 35 H 1.09001 * 109.46932 * 354.27916 * 6 5 3 36 36 H 0.97001 * 120.00128 * 0.02562 * 9 7 6 37 37 H 1.09001 * 110.37166 * 86.03556 * 12 10 9 38 38 H 1.09008 * 110.45916 * 323.76250 * 12 10 9 39 39 H 0.96999 * 120.00045 * 180.02562 * 17 16 14 40 40 H 1.08999 * 109.88474 * 118.36159 * 22 13 12 41 41 H 1.08999 * 109.88502 * 239.37477 * 22 13 12 42 42 H 1.08998 * 109.47480 * 60.00380 * 26 25 23 43 43 H 1.09005 * 109.47001 * 179.97438 * 26 25 23 44 44 H 1.08998 * 109.47278 * 299.99796 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3287 0.0000 0.0000 3 6 2.0644 1.2740 0.0000 4 6 1.3109 2.5792 -0.0006 5 6 3.3930 1.2740 -0.0005 6 6 4.1466 2.5722 -0.1350 7 6 5.1157 2.4736 -1.2848 8 8 5.1872 1.4502 -1.9317 9 7 5.9024 3.5232 -1.5949 10 6 6.8441 3.4276 -2.7130 11 1 6.4136 2.8572 -3.5361 12 6 8.1895 2.8116 -2.2547 13 7 9.1838 3.3164 -3.2191 14 6 10.3779 2.7183 -3.5211 15 1 10.6578 1.7954 -3.0348 16 6 11.2288 3.2980 -4.4521 17 7 10.8875 4.4224 -5.0450 18 14 12.8576 2.4816 -4.8646 19 1 12.6662 1.5386 -5.9956 20 1 13.8484 3.5194 -5.2475 21 1 13.3529 1.7380 -3.6784 22 6 8.6804 4.5680 -3.8036 23 6 7.2904 4.8378 -3.1897 24 1 7.3680 5.5230 -2.3457 25 8 6.3923 5.3488 -4.1768 26 6 6.3700 6.7753 -4.2593 27 1 -0.5399 0.9354 -0.0004 28 1 -0.5399 -0.9353 0.0004 29 1 1.8687 -0.9353 -0.0004 30 1 1.2047 2.9370 -1.0247 31 1 0.3236 2.4289 0.4360 32 1 1.8595 3.3156 0.5866 33 1 3.9331 0.3436 0.0955 34 1 4.6945 2.7713 0.7859 35 1 3.4426 3.3832 -0.3216 36 1 5.8449 4.3419 -1.0778 37 1 8.1414 1.7233 -2.2940 38 1 8.4367 3.1435 -1.2462 39 1 11.4818 4.8274 -5.6959 40 1 9.3572 5.3879 -3.5633 41 1 8.5939 4.4636 -4.8851 42 1 7.3658 7.1404 -4.5108 43 1 5.6648 7.0836 -5.0312 44 1 6.0627 7.1900 -3.2993 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001213285662.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:18:06 Heat of formation + Delta-G solvation = -42.458781 kcal Electronic energy + Delta-G solvation = -23627.545653 eV Core-core repulsion = 20159.811152 eV Total energy + Delta-G solvation = -3467.734501 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.09137 -39.69458 -37.80637 -37.45509 -35.58377 -33.81869 -33.24074 -30.71301 -29.76677 -28.72772 -27.58850 -27.32563 -25.92309 -22.89732 -22.19719 -21.76034 -20.99655 -19.16073 -18.75695 -18.23435 -17.77180 -17.25500 -16.93532 -16.52803 -16.01022 -15.82224 -15.67359 -15.28348 -15.03470 -14.84986 -14.49396 -14.25783 -13.98263 -13.75007 -13.62764 -13.32331 -13.12482 -12.98244 -12.76671 -12.62033 -12.46775 -12.31950 -12.26179 -12.08329 -11.87824 -11.72124 -11.61861 -11.36967 -10.97849 -10.78808 -10.54976 -10.10505 -9.09147 -8.98483 -7.89243 -5.27393 0.45067 1.44252 1.47145 1.55496 1.68119 1.99222 2.31296 2.46102 2.76704 3.30076 3.51328 3.73429 3.77029 3.93028 3.96021 4.03538 4.11774 4.34596 4.38559 4.45039 4.48176 4.50275 4.60170 4.63863 4.66026 4.82046 4.82900 4.88858 4.92519 5.00885 5.03062 5.17117 5.32581 5.36675 5.47962 5.50375 5.62253 5.64239 5.81543 6.07414 6.12185 6.31058 6.60172 7.03274 7.31917 7.68162 8.30696 9.20301 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.021190 B = 0.003216 C = 0.002885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.039974 B = 8703.619858 C = 9702.867428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.146 4.146 3 C -0.109 4.109 4 C -0.125 4.125 5 C -0.143 4.143 6 C -0.101 4.101 7 C 0.512 3.488 8 O -0.587 6.587 9 N -0.702 5.702 10 C 0.152 3.848 11 H 0.068 0.932 12 C 0.132 3.868 13 N -0.623 5.623 14 C -0.248 4.248 15 H 0.082 0.918 16 C -0.063 4.063 17 N -0.949 5.949 18 Si 0.982 3.018 19 H -0.288 1.288 20 H -0.289 1.289 21 H -0.267 1.267 22 C 0.173 3.827 23 C 0.078 3.922 24 H 0.100 0.900 25 O -0.398 6.398 26 C 0.026 3.974 27 H 0.114 0.886 28 H 0.112 0.888 29 H 0.107 0.893 30 H 0.067 0.933 31 H 0.078 0.922 32 H 0.086 0.914 33 H 0.097 0.903 34 H 0.133 0.867 35 H 0.129 0.871 36 H 0.418 0.582 37 H 0.031 0.969 38 H 0.044 0.956 39 H 0.249 0.751 40 H 0.023 0.977 41 H 0.016 0.984 42 H 0.032 0.968 43 H 0.100 0.900 44 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.759 3.049 13.358 24.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.164 4.164 3 C -0.109 4.109 4 C -0.181 4.181 5 C -0.162 4.162 6 C -0.140 4.140 7 C 0.301 3.699 8 O -0.467 6.467 9 N -0.355 5.355 10 C 0.045 3.955 11 H 0.086 0.914 12 C 0.005 3.995 13 N -0.350 5.350 14 C -0.376 4.376 15 H 0.100 0.900 16 C -0.256 4.256 17 N -0.598 5.598 18 Si 0.809 3.191 19 H -0.215 1.215 20 H -0.215 1.215 21 H -0.192 1.192 22 C 0.047 3.953 23 C 0.019 3.981 24 H 0.117 0.883 25 O -0.316 6.316 26 C -0.069 4.069 27 H 0.132 0.868 28 H 0.131 0.869 29 H 0.125 0.875 30 H 0.086 0.914 31 H 0.097 0.903 32 H 0.105 0.895 33 H 0.115 0.885 34 H 0.151 0.849 35 H 0.147 0.853 36 H 0.256 0.744 37 H 0.050 0.950 38 H 0.061 0.939 39 H 0.058 0.942 40 H 0.041 0.959 41 H 0.034 0.966 42 H 0.051 0.949 43 H 0.119 0.881 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -19.664 2.264 12.668 23.500 hybrid contribution 1.516 -0.160 -0.527 1.613 sum -18.148 2.104 12.141 21.936 Atomic orbital electron populations 1.24646 0.95127 1.03240 0.97981 1.22003 0.96155 0.96137 1.02069 1.20837 0.93802 0.95536 1.00727 1.20978 1.00796 0.93585 1.02734 1.22768 0.94420 0.97820 1.01160 1.20795 0.97527 0.98652 0.96997 1.21369 0.80687 0.82319 0.85560 1.90714 1.69903 1.31687 1.54351 1.45719 1.38945 1.17649 1.33158 1.21782 0.88971 0.95614 0.89108 0.91413 1.21925 0.87553 0.96886 0.93120 1.44537 1.18252 1.25114 1.47136 1.19448 0.93500 1.05175 1.19512 0.90042 1.25687 1.02550 0.98271 0.99072 1.70157 1.37969 1.20496 1.31137 0.85035 0.78721 0.77143 0.78154 1.21501 1.21535 1.19213 1.21329 0.90330 0.87985 0.95695 1.23509 0.89430 0.94094 0.91098 0.88252 1.87888 1.62142 1.22982 1.58629 1.22984 1.01572 0.79362 1.03029 0.86764 0.86950 0.87538 0.91400 0.90286 0.89490 0.88451 0.84885 0.85280 0.74397 0.95040 0.93865 0.94158 0.95903 0.96601 0.94888 0.88114 0.91402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.46 14.12 66.64 0.94 -1.52 16 2 C -0.15 -2.71 9.83 23.43 0.23 -2.48 16 3 C -0.11 -2.06 5.98 -18.71 -0.11 -2.17 16 4 C -0.12 -1.59 8.54 71.24 0.61 -0.98 16 5 C -0.14 -3.08 8.45 24.51 0.21 -2.87 16 6 C -0.10 -1.76 5.77 29.10 0.17 -1.59 16 7 C 0.51 14.54 7.82 87.66 0.69 15.23 16 8 O -0.59 -23.32 15.78 -3.03 -0.05 -23.36 16 9 N -0.70 -18.80 5.23 -435.55 -2.28 -21.08 16 10 C 0.15 5.75 3.05 46.47 0.14 5.89 16 11 H 0.07 3.07 7.73 -2.39 -0.02 3.05 16 12 C 0.13 5.78 6.93 86.85 0.60 6.38 16 13 N -0.62 -33.36 3.39 -691.98 -2.35 -35.71 16 14 C -0.25 -14.40 10.28 84.03 0.86 -13.54 16 15 H 0.08 4.57 7.83 -2.91 -0.02 4.55 16 16 C -0.06 -3.64 5.49 84.86 0.47 -3.18 16 17 N -0.95 -57.76 10.31 21.65 0.22 -57.53 16 18 Si 0.98 46.70 29.55 68.60 2.03 48.73 16 19 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 20 H -0.29 -13.59 7.11 99.48 0.71 -12.89 16 21 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 22 C 0.17 8.69 5.14 86.73 0.45 9.13 16 23 C 0.08 2.88 3.04 31.87 0.10 2.98 16 24 H 0.10 2.96 7.75 -2.39 -0.02 2.94 16 25 O -0.40 -14.24 10.44 -148.98 -1.56 -15.80 16 26 C 0.03 0.68 10.88 113.37 1.23 1.92 16 27 H 0.11 1.30 6.06 -2.91 -0.02 1.28 16 28 H 0.11 1.28 8.06 -2.91 -0.02 1.25 16 29 H 0.11 2.05 8.06 -2.91 -0.02 2.03 16 30 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.08 0.80 6.19 -2.39 -0.01 0.79 16 32 H 0.09 0.78 6.70 -2.39 -0.02 0.77 16 33 H 0.10 2.45 8.05 -2.91 -0.02 2.43 16 34 H 0.13 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.13 1.55 5.79 -2.39 -0.01 1.53 16 36 H 0.42 7.51 8.52 -92.71 -0.79 6.72 16 37 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.04 1.74 8.14 -2.38 -0.02 1.72 16 39 H 0.25 14.66 8.31 -92.71 -0.77 13.89 16 40 H 0.02 1.24 7.51 -2.39 -0.02 1.22 16 41 H 0.02 0.93 7.28 -2.39 -0.02 0.91 16 42 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 43 H 0.10 2.18 8.14 -2.38 -0.02 2.16 16 44 H 0.07 1.32 8.11 -2.39 -0.02 1.30 16 Total: -1.00 -78.15 362.15 2.79 -75.35 By element: Atomic # 1 Polarization: 16.01 SS G_CDS: 0.20 Total: 16.21 kcal Atomic # 6 Polarization: 6.61 SS G_CDS: 6.58 Total: 13.19 kcal Atomic # 7 Polarization: -109.91 SS G_CDS: -4.40 Total: -114.32 kcal Atomic # 8 Polarization: -37.56 SS G_CDS: -1.60 Total: -39.16 kcal Atomic # 14 Polarization: 46.70 SS G_CDS: 2.03 Total: 48.73 kcal Total: -78.15 2.79 -75.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001213285662.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.895 kcal (2) G-P(sol) polarization free energy of solvation -78.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds