Wall clock time and date at job start Tue Mar 31 2020 07:18:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32866 * 1 3 3 C 1.47117 * 119.99870 * 2 1 4 4 C 1.50702 * 120.00099 * 355.67870 * 3 2 1 5 5 C 1.32874 * 119.99968 * 175.67235 * 3 2 1 6 6 C 1.50698 * 119.99939 * 6.35300 * 5 3 2 7 7 C 1.50701 * 109.47125 * 125.99419 * 6 5 3 8 8 O 1.21285 * 120.00024 * 359.97438 * 7 6 5 9 9 N 1.34777 * 119.99964 * 180.02562 * 7 6 5 10 10 C 1.46504 * 119.99776 * 180.02562 * 9 7 6 11 11 H 1.08993 * 110.88950 * 37.41885 * 10 9 7 12 12 C 1.54914 * 111.00013 * 273.53793 * 10 9 7 13 13 N 1.47425 * 104.83076 * 204.87784 * 12 10 9 14 14 C 1.36939 * 125.65068 * 204.16009 * 13 12 10 15 15 H 1.07998 * 119.99273 * 354.97423 * 14 13 12 16 16 C 1.38808 * 119.99957 * 174.96503 * 14 13 12 17 17 N 1.31615 * 120.00351 * 5.41902 * 16 14 13 18 18 Si 1.86804 * 119.99716 * 185.41480 * 16 14 13 19 19 H 1.48506 * 109.46678 * 95.00151 * 18 16 14 20 20 H 1.48497 * 109.47132 * 214.99864 * 18 16 14 21 21 H 1.48499 * 109.47003 * 335.00026 * 18 16 14 22 22 C 1.47022 * 108.70094 * 24.13397 * 13 12 10 23 23 C 1.54322 * 107.40474 * 358.85733 * 22 13 12 24 24 H 1.09002 * 110.71880 * 96.24883 * 23 22 13 25 25 O 1.42904 * 110.72380 * 219.52383 * 23 22 13 26 26 C 1.42901 * 114.00111 * 268.54943 * 25 23 22 27 27 H 1.08006 * 120.00240 * 179.97438 * 1 2 3 28 28 H 1.07998 * 120.00639 * 0.02562 * 1 2 3 29 29 H 1.08002 * 119.99880 * 180.02562 * 2 1 3 30 30 H 1.08995 * 109.46795 * 269.99845 * 4 3 2 31 31 H 1.09005 * 109.46973 * 29.99674 * 4 3 2 32 32 H 1.08995 * 109.47070 * 149.99680 * 4 3 2 33 33 H 1.08001 * 119.99961 * 186.34690 * 5 3 2 34 34 H 1.09002 * 109.46858 * 5.99475 * 6 5 3 35 35 H 1.08999 * 109.47253 * 245.99553 * 6 5 3 36 36 H 0.96996 * 120.00396 * 359.97438 * 9 7 6 37 37 H 1.08999 * 110.36229 * 86.04072 * 12 10 9 38 38 H 1.08997 * 110.46003 * 323.76431 * 12 10 9 39 39 H 0.97001 * 120.00124 * 180.02562 * 17 16 14 40 40 H 1.08998 * 109.88826 * 118.35703 * 22 13 12 41 41 H 1.09003 * 109.88045 * 239.36309 * 22 13 12 42 42 H 1.09005 * 109.47189 * 300.00024 * 26 25 23 43 43 H 1.09002 * 109.47210 * 59.99566 * 26 25 23 44 44 H 1.08996 * 109.47583 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3287 0.0000 0.0000 3 6 2.0642 1.2741 0.0000 4 6 1.3139 2.5773 -0.0983 5 6 3.3901 1.2757 0.0868 6 6 4.1498 -0.0249 0.0410 7 6 5.1970 0.0428 -1.0406 8 8 5.3145 1.0481 -1.7089 9 7 6.0023 -1.0141 -1.2661 10 6 7.0206 -0.9480 -2.3173 11 1 7.4647 0.0461 -2.3661 12 6 6.4303 -1.3606 -3.6888 13 7 7.5866 -1.8372 -4.4693 14 6 7.6700 -1.8658 -5.8359 15 1 6.8128 -1.5960 -6.4348 16 6 8.8563 -2.2414 -6.4511 17 7 9.8664 -2.6720 -5.7255 18 14 9.0190 -2.1357 -8.3090 19 1 9.6502 -0.8431 -8.6779 20 1 9.8634 -3.2558 -8.7965 21 1 7.6728 -2.2242 -8.9296 22 6 8.6357 -2.2762 -3.5375 23 6 8.1128 -2.0331 -2.1060 24 1 7.6767 -2.9437 -1.6950 25 8 9.1577 -1.5456 -1.2619 26 6 9.8735 -2.5716 -0.5712 27 1 -0.5401 -0.9353 -0.0004 28 1 -0.5401 0.9352 -0.0004 29 1 1.8686 -0.9353 -0.0004 30 1 1.2001 2.8528 -1.1468 31 1 0.3298 2.4652 0.3568 32 1 1.8691 3.3565 0.4239 33 1 3.9233 2.2092 0.1902 34 1 3.4598 -0.8414 -0.1719 35 1 4.6319 -0.1982 1.0031 36 1 5.9081 -1.8183 -0.7320 37 1 5.9707 -0.5016 -4.1777 38 1 5.7007 -2.1607 -3.5645 39 1 10.6955 -2.9341 -6.1554 40 1 8.8401 -3.3370 -3.6823 41 1 9.5446 -1.6977 -3.7033 42 1 9.1849 -3.1326 0.0607 43 1 10.3325 -3.2448 -1.2952 44 1 10.6491 -2.1203 0.0473 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001213285663.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:18:10 Heat of formation + Delta-G solvation = -16.786463 kcal Electronic energy + Delta-G solvation = -23681.687410 eV Core-core repulsion = 20215.066144 eV Total energy + Delta-G solvation = -3466.621266 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.76622 -38.24278 -36.98577 -35.86600 -34.00340 -32.25268 -31.64160 -30.11417 -28.73785 -27.22658 -26.14501 -25.51634 -24.02901 -22.06272 -20.79037 -20.49343 -19.86701 -17.80599 -17.33653 -16.80151 -16.35181 -15.95654 -15.60687 -15.11019 -14.66431 -14.46838 -14.25667 -14.20915 -13.69407 -13.38843 -13.22673 -12.87197 -12.73572 -12.54292 -12.27961 -12.07968 -11.90504 -11.69527 -11.50678 -11.21759 -11.01439 -10.80544 -10.79465 -10.73965 -10.61547 -10.13136 -9.98050 -9.79529 -9.69465 -9.08111 -8.76186 -8.57502 -8.34536 -6.88047 -5.74006 -3.08131 1.19868 2.81570 2.85975 3.40165 3.43943 3.47151 3.48848 4.12876 4.50446 4.51635 4.70272 4.81752 4.96153 5.10544 5.23524 5.32541 5.37954 5.40181 5.46870 5.48539 5.54405 5.57793 5.60990 5.65959 5.72062 5.86336 5.88030 5.93613 6.06394 6.17159 6.21708 6.28222 6.54273 6.57621 6.66502 6.79246 6.87900 7.24538 7.47594 7.69939 7.73832 7.86281 8.20805 8.45447 9.17756 9.78026 10.41594 11.37678 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.016481 B = 0.003511 C = 0.003062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1698.537829 B = 7972.065568 C = 9142.218079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.123 4.123 3 C -0.115 4.115 4 C -0.114 4.114 5 C -0.113 4.113 6 C -0.119 4.119 7 C 0.515 3.485 8 O -0.534 6.534 9 N -0.718 5.718 10 C 0.135 3.865 11 H 0.103 0.897 12 C 0.131 3.869 13 N -0.600 5.600 14 C -0.229 4.229 15 H 0.081 0.919 16 C -0.006 4.006 17 N -0.921 5.921 18 Si 0.913 3.087 19 H -0.288 1.288 20 H -0.291 1.291 21 H -0.280 1.280 22 C 0.162 3.838 23 C 0.056 3.944 24 H 0.062 0.938 25 O -0.379 6.379 26 C 0.034 3.966 27 H 0.100 0.900 28 H 0.101 0.899 29 H 0.117 0.883 30 H 0.069 0.931 31 H 0.062 0.938 32 H 0.064 0.936 33 H 0.120 0.880 34 H 0.101 0.899 35 H 0.102 0.898 36 H 0.396 0.604 37 H 0.051 0.949 38 H 0.022 0.978 39 H 0.253 0.747 40 H 0.045 0.955 41 H 0.065 0.935 42 H 0.033 0.967 43 H 0.046 0.954 44 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.484 1.820 16.456 20.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.140 4.140 3 C -0.115 4.115 4 C -0.171 4.171 5 C -0.131 4.131 6 C -0.159 4.159 7 C 0.301 3.699 8 O -0.410 6.410 9 N -0.369 5.369 10 C 0.030 3.970 11 H 0.121 0.879 12 C 0.004 3.996 13 N -0.328 5.328 14 C -0.357 4.357 15 H 0.099 0.901 16 C -0.202 4.202 17 N -0.568 5.568 18 Si 0.743 3.257 19 H -0.215 1.215 20 H -0.217 1.217 21 H -0.206 1.206 22 C 0.037 3.963 23 C -0.003 4.003 24 H 0.080 0.920 25 O -0.297 6.297 26 C -0.062 4.062 27 H 0.118 0.882 28 H 0.119 0.881 29 H 0.135 0.865 30 H 0.088 0.912 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.138 0.862 34 H 0.119 0.881 35 H 0.120 0.880 36 H 0.229 0.771 37 H 0.069 0.931 38 H 0.040 0.960 39 H 0.063 0.937 40 H 0.063 0.937 41 H 0.083 0.917 42 H 0.052 0.948 43 H 0.065 0.935 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -12.186 2.693 15.818 20.148 hybrid contribution 0.191 -0.838 -0.699 1.108 sum -11.995 1.855 15.118 19.388 Atomic orbital electron populations 1.24418 0.95744 1.01984 1.00308 1.21996 0.95370 0.96405 1.00277 1.20539 0.94039 0.94385 1.02524 1.20780 0.99824 0.94146 1.02351 1.22813 0.93698 0.97817 0.98764 1.20857 0.97428 0.98623 0.98970 1.20456 0.81766 0.83168 0.84520 1.90724 1.69971 1.31140 1.49187 1.45971 1.36147 1.17170 1.37629 1.22378 0.86741 1.00684 0.87186 0.87922 1.21827 0.91226 0.96959 0.89623 1.44254 1.12662 1.74065 1.01822 1.19087 0.97181 1.39708 0.79743 0.90132 1.24836 0.95950 1.01196 0.98259 1.69944 1.04262 1.49094 1.33542 0.86078 0.77531 0.77314 0.84729 1.21484 1.21749 1.20563 1.21598 0.92597 0.99559 0.82583 1.23850 0.87584 0.94853 0.94007 0.91999 1.87902 1.48539 1.32430 1.60806 1.22700 0.95807 0.91917 0.95825 0.88213 0.88096 0.86487 0.91201 0.91881 0.91679 0.86174 0.88078 0.88045 0.77090 0.93093 0.96050 0.93668 0.93730 0.91676 0.94848 0.93541 0.90255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.51 14.13 28.88 0.41 -1.11 16 2 C -0.12 -1.14 9.30 -37.83 -0.35 -1.49 16 3 C -0.11 -1.19 5.98 -102.87 -0.62 -1.80 16 4 C -0.11 -1.01 9.59 36.01 0.35 -0.66 16 5 C -0.11 -1.26 8.43 -36.16 -0.30 -1.57 16 6 C -0.12 -1.23 5.94 -29.04 -0.17 -1.40 16 7 C 0.52 7.69 7.82 -10.98 -0.09 7.61 16 8 O -0.53 -10.41 15.78 5.55 0.09 -10.33 16 9 N -0.72 -10.43 5.23 -51.60 -0.27 -10.70 16 10 C 0.14 2.57 3.05 -65.64 -0.20 2.37 16 11 H 0.10 2.24 7.73 -51.93 -0.40 1.84 16 12 C 0.13 2.86 6.93 -2.53 -0.02 2.85 16 13 N -0.60 -15.66 3.39 -170.07 -0.58 -16.23 16 14 C -0.23 -6.51 10.27 -15.06 -0.15 -6.66 16 15 H 0.08 2.22 7.83 -52.49 -0.41 1.81 16 16 C -0.01 -0.17 5.48 -17.43 -0.10 -0.27 16 17 N -0.92 -27.10 10.34 55.49 0.57 -26.52 16 18 Si 0.91 22.34 29.56 -169.99 -5.02 17.32 16 19 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 20 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 21 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 22 C 0.16 3.96 5.15 -3.07 -0.02 3.94 16 23 C 0.06 1.06 3.04 -24.77 -0.08 0.98 16 24 H 0.06 1.02 7.75 -51.93 -0.40 0.62 16 25 O -0.38 -6.96 10.44 -35.23 -0.37 -7.33 16 26 C 0.03 0.48 10.88 101.05 1.10 1.58 16 27 H 0.10 0.67 8.06 -52.48 -0.42 0.25 16 28 H 0.10 0.74 6.08 -52.49 -0.32 0.42 16 29 H 0.12 0.96 5.84 -52.49 -0.31 0.65 16 30 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.06 0.46 6.29 -51.93 -0.33 0.14 16 32 H 0.06 0.53 8.06 -51.93 -0.42 0.11 16 33 H 0.12 1.41 8.04 -52.49 -0.42 0.99 16 34 H 0.10 0.87 5.33 -51.93 -0.28 0.59 16 35 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.40 4.38 8.52 -40.82 -0.35 4.03 16 37 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 38 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 40 H 0.04 1.17 7.64 -51.93 -0.40 0.77 16 41 H 0.07 1.81 7.16 -51.93 -0.37 1.44 16 42 H 0.03 0.39 8.11 -51.93 -0.42 -0.03 16 43 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 44 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 361.66 15.07 5.45 5.45 Total: -1.00 -33.69 361.66 -7.28 -40.97 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: -6.92 Total: 3.01 kcal Atomic # 6 Polarization: 4.60 SS G_CDS: -0.24 Total: 4.36 kcal Atomic # 7 Polarization: -53.18 SS G_CDS: -0.27 Total: -53.46 kcal Atomic # 8 Polarization: -17.37 SS G_CDS: -0.28 Total: -17.65 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -33.69 -7.28 -40.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001213285663.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.180 kcal (2) G-P(sol) polarization free energy of solvation -33.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds