Wall clock time and date at job start Tue Mar 31 2020 07:18:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32866 * 1 3 3 C 1.47117 * 119.99870 * 2 1 4 4 C 1.50702 * 120.00099 * 355.67870 * 3 2 1 5 5 C 1.32874 * 119.99968 * 175.67235 * 3 2 1 6 6 C 1.50698 * 119.99939 * 6.35300 * 5 3 2 7 7 C 1.50701 * 109.47125 * 125.99419 * 6 5 3 8 8 O 1.21285 * 120.00024 * 359.97438 * 7 6 5 9 9 N 1.34777 * 119.99964 * 180.02562 * 7 6 5 10 10 C 1.46504 * 119.99776 * 180.02562 * 9 7 6 11 11 H 1.08993 * 110.88950 * 37.41885 * 10 9 7 12 12 C 1.54914 * 111.00013 * 273.53793 * 10 9 7 13 13 N 1.47425 * 104.83076 * 204.87784 * 12 10 9 14 14 C 1.36939 * 125.65068 * 204.16009 * 13 12 10 15 15 H 1.07998 * 119.99273 * 354.97423 * 14 13 12 16 16 C 1.38808 * 119.99957 * 174.96503 * 14 13 12 17 17 N 1.31615 * 120.00351 * 5.41902 * 16 14 13 18 18 Si 1.86804 * 119.99716 * 185.41480 * 16 14 13 19 19 H 1.48506 * 109.46678 * 95.00151 * 18 16 14 20 20 H 1.48497 * 109.47132 * 214.99864 * 18 16 14 21 21 H 1.48499 * 109.47003 * 335.00026 * 18 16 14 22 22 C 1.47022 * 108.70094 * 24.13397 * 13 12 10 23 23 C 1.54322 * 107.40474 * 358.85733 * 22 13 12 24 24 H 1.09002 * 110.71880 * 96.24883 * 23 22 13 25 25 O 1.42904 * 110.72380 * 219.52383 * 23 22 13 26 26 C 1.42901 * 114.00111 * 268.54943 * 25 23 22 27 27 H 1.08006 * 120.00240 * 179.97438 * 1 2 3 28 28 H 1.07998 * 120.00639 * 0.02562 * 1 2 3 29 29 H 1.08002 * 119.99880 * 180.02562 * 2 1 3 30 30 H 1.08995 * 109.46795 * 269.99845 * 4 3 2 31 31 H 1.09005 * 109.46973 * 29.99674 * 4 3 2 32 32 H 1.08995 * 109.47070 * 149.99680 * 4 3 2 33 33 H 1.08001 * 119.99961 * 186.34690 * 5 3 2 34 34 H 1.09002 * 109.46858 * 5.99475 * 6 5 3 35 35 H 1.08999 * 109.47253 * 245.99553 * 6 5 3 36 36 H 0.96996 * 120.00396 * 359.97438 * 9 7 6 37 37 H 1.08999 * 110.36229 * 86.04072 * 12 10 9 38 38 H 1.08997 * 110.46003 * 323.76431 * 12 10 9 39 39 H 0.97001 * 120.00124 * 180.02562 * 17 16 14 40 40 H 1.08998 * 109.88826 * 118.35703 * 22 13 12 41 41 H 1.09003 * 109.88045 * 239.36309 * 22 13 12 42 42 H 1.09005 * 109.47189 * 300.00024 * 26 25 23 43 43 H 1.09002 * 109.47210 * 59.99566 * 26 25 23 44 44 H 1.08996 * 109.47583 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3287 0.0000 0.0000 3 6 2.0642 1.2741 0.0000 4 6 1.3139 2.5773 -0.0983 5 6 3.3901 1.2757 0.0868 6 6 4.1498 -0.0249 0.0410 7 6 5.1970 0.0428 -1.0406 8 8 5.3145 1.0481 -1.7089 9 7 6.0023 -1.0141 -1.2661 10 6 7.0206 -0.9480 -2.3173 11 1 7.4647 0.0461 -2.3661 12 6 6.4303 -1.3606 -3.6888 13 7 7.5866 -1.8372 -4.4693 14 6 7.6700 -1.8658 -5.8359 15 1 6.8128 -1.5960 -6.4348 16 6 8.8563 -2.2414 -6.4511 17 7 9.8664 -2.6720 -5.7255 18 14 9.0190 -2.1357 -8.3090 19 1 9.6502 -0.8431 -8.6779 20 1 9.8634 -3.2558 -8.7965 21 1 7.6728 -2.2242 -8.9296 22 6 8.6357 -2.2762 -3.5375 23 6 8.1128 -2.0331 -2.1060 24 1 7.6767 -2.9437 -1.6950 25 8 9.1577 -1.5456 -1.2619 26 6 9.8735 -2.5716 -0.5712 27 1 -0.5401 -0.9353 -0.0004 28 1 -0.5401 0.9352 -0.0004 29 1 1.8686 -0.9353 -0.0004 30 1 1.2001 2.8528 -1.1468 31 1 0.3298 2.4652 0.3568 32 1 1.8691 3.3565 0.4239 33 1 3.9233 2.2092 0.1902 34 1 3.4598 -0.8414 -0.1719 35 1 4.6319 -0.1982 1.0031 36 1 5.9081 -1.8183 -0.7320 37 1 5.9707 -0.5016 -4.1777 38 1 5.7007 -2.1607 -3.5645 39 1 10.6955 -2.9341 -6.1554 40 1 8.8401 -3.3370 -3.6823 41 1 9.5446 -1.6977 -3.7033 42 1 9.1849 -3.1326 0.0607 43 1 10.3325 -3.2448 -1.2952 44 1 10.6491 -2.1203 0.0473 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001213285663.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:18:09 Heat of formation + Delta-G solvation = -40.257166 kcal Electronic energy + Delta-G solvation = -23682.705176 eV Core-core repulsion = 20215.066144 eV Total energy + Delta-G solvation = -3467.639032 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.09377 -39.69751 -37.82710 -37.45823 -35.58497 -33.76447 -32.83804 -31.03697 -30.36446 -28.85683 -27.55919 -26.65459 -25.65505 -22.88850 -22.33966 -22.05120 -21.33389 -19.19055 -18.46628 -18.21374 -17.73134 -17.24917 -16.83597 -16.55116 -15.91585 -15.84963 -15.69498 -15.44482 -15.07275 -14.75824 -14.56255 -14.24731 -13.97881 -13.64525 -13.45717 -13.32183 -13.12873 -13.02474 -12.84777 -12.78826 -12.60737 -12.40608 -12.30216 -12.06990 -11.89208 -11.61581 -11.49426 -11.32302 -10.96595 -10.78002 -10.54660 -10.11140 -9.09078 -8.98172 -7.90294 -5.27657 0.47128 1.44028 1.47249 1.55621 1.67619 1.99406 2.31554 2.45960 2.76415 3.29315 3.50992 3.73289 3.77965 3.91940 3.92875 4.03078 4.10663 4.24293 4.37276 4.44457 4.49840 4.60014 4.62064 4.65554 4.71686 4.79225 4.82040 4.82347 4.88564 4.96564 5.00542 5.18193 5.30430 5.37806 5.48472 5.52662 5.62228 5.64003 5.85091 6.07480 6.12128 6.30855 6.59511 7.02959 7.31265 7.67884 8.30809 9.19481 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.016481 B = 0.003511 C = 0.003062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1698.537829 B = 7972.065568 C = 9142.218079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.147 4.147 3 C -0.110 4.110 4 C -0.119 4.119 5 C -0.142 4.142 6 C -0.103 4.103 7 C 0.512 3.488 8 O -0.586 6.586 9 N -0.703 5.703 10 C 0.153 3.847 11 H 0.069 0.931 12 C 0.132 3.868 13 N -0.622 5.622 14 C -0.250 4.250 15 H 0.082 0.918 16 C -0.060 4.060 17 N -0.947 5.947 18 Si 0.980 3.020 19 H -0.289 1.289 20 H -0.289 1.289 21 H -0.267 1.267 22 C 0.171 3.829 23 C 0.078 3.922 24 H 0.099 0.901 25 O -0.398 6.398 26 C 0.026 3.974 27 H 0.116 0.884 28 H 0.106 0.894 29 H 0.129 0.871 30 H 0.064 0.936 31 H 0.079 0.921 32 H 0.067 0.933 33 H 0.104 0.896 34 H 0.126 0.874 35 H 0.133 0.867 36 H 0.418 0.582 37 H 0.031 0.969 38 H 0.042 0.958 39 H 0.249 0.751 40 H 0.020 0.980 41 H 0.020 0.980 42 H 0.067 0.933 43 H 0.033 0.967 44 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.465 0.709 18.166 23.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.165 4.165 3 C -0.111 4.111 4 C -0.176 4.176 5 C -0.160 4.160 6 C -0.142 4.142 7 C 0.301 3.699 8 O -0.465 6.465 9 N -0.355 5.355 10 C 0.046 3.954 11 H 0.087 0.913 12 C 0.005 3.995 13 N -0.350 5.350 14 C -0.378 4.378 15 H 0.100 0.900 16 C -0.254 4.254 17 N -0.595 5.595 18 Si 0.808 3.192 19 H -0.216 1.216 20 H -0.215 1.215 21 H -0.191 1.191 22 C 0.045 3.955 23 C 0.019 3.981 24 H 0.117 0.883 25 O -0.316 6.316 26 C -0.069 4.069 27 H 0.134 0.866 28 H 0.124 0.876 29 H 0.147 0.853 30 H 0.082 0.918 31 H 0.098 0.902 32 H 0.086 0.914 33 H 0.123 0.877 34 H 0.143 0.857 35 H 0.150 0.850 36 H 0.255 0.745 37 H 0.049 0.951 38 H 0.060 0.940 39 H 0.059 0.941 40 H 0.038 0.962 41 H 0.038 0.962 42 H 0.086 0.914 43 H 0.051 0.949 44 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -14.201 1.557 17.582 22.654 hybrid contribution 0.729 -0.458 -1.197 1.475 sum -13.471 1.099 16.385 21.240 Atomic orbital electron populations 1.24680 0.95487 1.03111 0.97785 1.22129 0.95969 0.96249 1.02118 1.20820 0.94021 0.95525 1.00692 1.20850 1.00696 0.93831 1.02182 1.22802 0.94216 0.97807 1.01179 1.20840 0.96157 0.98942 0.98270 1.21375 0.81860 0.82022 0.84691 1.90710 1.71401 1.33150 1.51280 1.45729 1.34888 1.18364 1.36545 1.21783 0.87609 0.98821 0.87224 0.91318 1.21919 0.90409 0.96565 0.90572 1.44524 1.14258 1.74388 1.01819 1.19449 0.97510 1.39548 0.81334 0.90030 1.25690 0.95699 1.01184 1.02799 1.70159 1.04461 1.49799 1.35081 0.85042 0.77886 0.76886 0.79403 1.21607 1.21549 1.19126 1.21348 0.91134 0.97017 0.85981 1.23500 0.87488 0.96034 0.91075 0.88316 1.87887 1.48701 1.34355 1.60678 1.22983 0.96792 0.91399 0.95772 0.86575 0.87567 0.85322 0.91769 0.90209 0.91411 0.87750 0.85674 0.84951 0.74454 0.95068 0.94007 0.94140 0.96198 0.96204 0.91445 0.94863 0.88108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.27 14.13 66.64 0.94 -1.33 16 2 C -0.15 -2.33 9.30 23.43 0.22 -2.11 16 3 C -0.11 -2.11 5.98 -18.71 -0.11 -2.23 16 4 C -0.12 -1.96 9.59 71.24 0.68 -1.28 16 5 C -0.14 -3.03 8.43 24.51 0.21 -2.83 16 6 C -0.10 -1.86 5.94 29.10 0.17 -1.69 16 7 C 0.51 14.67 7.82 87.66 0.69 15.35 16 8 O -0.59 -23.24 15.78 -3.04 -0.05 -23.28 16 9 N -0.70 -19.03 5.23 -435.55 -2.28 -21.31 16 10 C 0.15 5.78 3.05 46.47 0.14 5.92 16 11 H 0.07 3.11 7.73 -2.39 -0.02 3.09 16 12 C 0.13 5.82 6.93 86.86 0.60 6.42 16 13 N -0.62 -33.37 3.39 -691.99 -2.35 -35.72 16 14 C -0.25 -14.55 10.27 84.03 0.86 -13.68 16 15 H 0.08 4.58 7.83 -2.91 -0.02 4.56 16 16 C -0.06 -3.51 5.48 84.86 0.47 -3.04 16 17 N -0.95 -57.59 10.34 21.65 0.22 -57.37 16 18 Si 0.98 46.73 29.56 68.60 2.03 48.76 16 19 H -0.29 -13.75 7.11 99.48 0.71 -13.05 16 20 H -0.29 -13.60 7.11 99.48 0.71 -12.90 16 21 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 22 C 0.17 8.62 5.15 86.73 0.45 9.07 16 23 C 0.08 2.90 3.04 31.87 0.10 3.00 16 24 H 0.10 2.96 7.75 -2.39 -0.02 2.94 16 25 O -0.40 -14.28 10.44 -148.98 -1.56 -15.83 16 26 C 0.03 0.69 10.88 113.37 1.23 1.92 16 27 H 0.12 1.13 8.06 -2.91 -0.02 1.11 16 28 H 0.11 1.24 6.08 -2.91 -0.02 1.22 16 29 H 0.13 1.66 5.84 -2.91 -0.02 1.64 16 30 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.08 1.01 6.29 -2.38 -0.01 1.00 16 32 H 0.07 1.06 8.06 -2.39 -0.02 1.04 16 33 H 0.10 2.50 8.04 -2.91 -0.02 2.48 16 34 H 0.13 1.68 5.33 -2.39 -0.01 1.67 16 35 H 0.13 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.42 7.68 8.52 -92.71 -0.79 6.89 16 37 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 39 H 0.25 14.66 8.31 -92.71 -0.77 13.89 16 40 H 0.02 1.08 7.64 -2.39 -0.02 1.06 16 41 H 0.02 1.16 7.16 -2.39 -0.02 1.14 16 42 H 0.07 1.32 8.11 -2.38 -0.02 1.30 16 43 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 44 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16 Total: -1.00 -77.40 361.66 2.87 -74.53 By element: Atomic # 1 Polarization: 16.52 SS G_CDS: 0.20 Total: 16.72 kcal Atomic # 6 Polarization: 6.86 SS G_CDS: 6.65 Total: 13.50 kcal Atomic # 7 Polarization: -109.99 SS G_CDS: -4.40 Total: -114.39 kcal Atomic # 8 Polarization: -37.52 SS G_CDS: -1.60 Total: -39.12 kcal Atomic # 14 Polarization: 46.73 SS G_CDS: 2.03 Total: 48.76 kcal Total: -77.40 2.87 -74.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001213285663.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.272 kcal (2) G-P(sol) polarization free energy of solvation -77.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds