Wall clock time and date at job start Tue Mar 31 2020 07:03:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50698 * 109.47027 * 2 1 4 4 C 1.32993 * 120.00387 * 120.37226 * 3 2 1 5 5 C 1.50697 * 120.00375 * 184.76295 * 4 3 2 6 6 C 1.47103 * 119.99579 * 4.75906 * 4 3 2 7 7 O 1.21612 * 120.00081 * 264.79378 * 6 4 3 8 8 N 1.34777 * 119.99664 * 84.80321 * 6 4 3 9 9 C 1.44956 * 117.34199 * 5.88852 * 8 6 4 10 10 C 1.51965 * 111.93926 * 203.73335 * 9 8 6 11 11 O 1.41314 * 111.60552 * 319.69544 * 10 9 8 12 12 C 1.40852 * 118.31031 * 56.89482 * 11 10 9 13 13 H 1.09003 * 109.54011 * 188.62897 * 12 11 10 14 14 C 1.53913 * 110.30358 * 68.00916 * 12 11 10 15 15 N 1.46775 * 107.62600 * 221.41189 * 14 12 11 16 16 C 1.36942 * 125.35962 * 178.83072 * 15 14 12 17 17 H 1.08000 * 119.99589 * 180.02562 * 16 15 14 18 18 C 1.38807 * 119.99974 * 0.02562 * 16 15 14 19 19 N 1.31617 * 120.00336 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 119.99819 * 180.02562 * 18 16 15 21 21 H 1.48508 * 109.47282 * 59.99926 * 20 18 16 22 22 H 1.48498 * 109.47291 * 179.97438 * 20 18 16 23 23 H 1.48494 * 109.47294 * 300.00034 * 20 18 16 24 24 C 1.46866 * 109.27658 * 358.80038 * 15 14 12 25 25 C 1.44554 * 117.33328 * 185.63320 * 8 6 4 26 26 H 1.08999 * 109.63773 * 286.46137 * 25 8 6 27 27 H 1.09003 * 109.46878 * 300.00482 * 1 2 3 28 28 H 1.08998 * 109.47222 * 59.99793 * 1 2 3 29 29 H 1.09000 * 109.47336 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46878 * 239.99517 * 2 1 3 31 31 H 1.09000 * 109.47167 * 119.99430 * 2 1 3 32 32 H 1.08004 * 119.99969 * 300.08838 * 3 2 1 33 33 H 1.09010 * 109.46768 * 84.99117 * 5 4 3 34 34 H 1.08996 * 109.47397 * 204.99484 * 5 4 3 35 35 H 1.09003 * 109.47003 * 324.99815 * 5 4 3 36 36 H 1.09007 * 108.98534 * 324.36903 * 9 8 6 37 37 H 1.09000 * 108.98625 * 83.18055 * 9 8 6 38 38 H 1.09001 * 109.05285 * 80.24146 * 10 9 8 39 39 H 1.08995 * 109.04997 * 199.21245 * 10 9 8 40 40 H 1.09001 * 109.82311 * 340.93073 * 14 12 11 41 41 H 1.08995 * 109.82721 * 101.79855 * 14 12 11 42 42 H 0.97005 * 119.99975 * 180.02562 * 19 18 16 43 43 H 1.08996 * 110.06519 * 137.03834 * 24 15 14 44 44 H 1.09001 * 110.06917 * 258.56658 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.8030 1.8537 0.9936 5 6 3.2170 3.3016 1.0504 6 6 3.2513 0.9191 2.0374 7 8 2.6292 0.8260 3.0782 8 7 4.3517 0.1662 1.8403 9 6 5.1228 0.4161 0.6385 10 6 5.9441 -0.7951 0.2288 11 8 6.5167 -1.4386 1.3491 12 6 5.6593 -1.8850 2.3736 13 1 6.2519 -2.2164 3.2263 14 6 4.7866 -3.0487 1.8704 15 7 3.4291 -2.8426 2.3889 16 6 2.3546 -3.6549 2.1419 17 1 1.3908 -3.4202 2.5690 18 6 2.5042 -4.7798 1.3427 19 7 3.6789 -5.0662 0.8226 20 14 1.0384 -5.8875 1.0052 21 1 -0.0274 -5.1056 0.3283 22 1 1.4583 -7.0116 0.1304 23 1 0.5187 -6.4254 2.2880 24 6 3.4046 -1.6284 3.2148 25 6 4.6698 -0.8207 2.8474 26 1 5.0581 -0.3245 3.7368 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5137 0.8900 32 1 1.7702 2.0862 -0.8093 33 1 2.4367 3.8836 1.5412 34 1 4.1461 3.3922 1.6130 35 1 3.3673 3.6765 0.0379 36 1 4.4418 0.6738 -0.1727 37 1 5.7953 1.2552 0.8167 38 1 5.3000 -1.5007 -0.2961 39 1 6.7410 -0.4743 -0.4419 40 1 4.7693 -3.0534 0.7806 41 1 5.1843 -3.9947 2.2377 42 1 3.7833 -5.8521 0.2637 43 1 2.5112 -1.0443 2.9947 44 1 3.4272 -1.8944 4.2717 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001217436688.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:57 Heat of formation + Delta-G solvation = -21.305269 kcal Electronic energy + Delta-G solvation = -26201.556978 eV Core-core repulsion = 22734.739762 eV Total energy + Delta-G solvation = -3466.817216 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.84249 -38.53132 -36.09732 -35.40523 -34.62490 -32.43493 -31.91419 -29.96492 -27.95126 -27.45737 -26.87662 -24.72953 -23.29087 -22.97649 -21.84713 -20.39378 -19.06935 -18.11757 -17.16170 -16.70042 -16.19795 -15.55055 -15.37368 -15.08340 -14.63236 -14.33785 -14.19186 -13.91937 -13.51898 -13.26815 -13.11642 -12.92386 -12.63687 -12.37206 -12.27186 -12.09409 -11.82454 -11.77381 -11.33186 -11.06905 -10.91431 -10.81732 -10.69326 -10.63642 -10.59975 -10.27753 -10.11214 -9.71732 -9.40522 -8.98449 -8.76047 -8.59778 -8.15829 -6.80657 -5.70783 -3.04100 1.85999 2.84787 3.23768 3.40110 3.44829 3.45830 4.13344 4.49283 4.58213 4.86638 4.94652 5.17553 5.20482 5.27979 5.37554 5.42453 5.46902 5.51367 5.53147 5.57314 5.62374 5.71956 5.74308 5.81702 5.85343 5.89076 6.02891 6.10400 6.16314 6.30524 6.33712 6.41435 6.53824 6.59469 6.71881 6.85852 7.14816 7.42086 7.51337 7.58223 7.73817 7.91750 8.25493 8.43935 9.22649 9.82901 10.46588 11.40384 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.014355 B = 0.007301 C = 0.005755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1950.113653 B = 3834.381184 C = 4864.502227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.109 4.109 3 C -0.107 4.107 4 C -0.172 4.172 5 C -0.100 4.100 6 C 0.555 3.445 7 O -0.529 6.529 8 N -0.580 5.580 9 C 0.081 3.919 10 C 0.058 3.942 11 O -0.371 6.371 12 C 0.069 3.931 13 H 0.109 0.891 14 C 0.154 3.846 15 N -0.600 5.600 16 C -0.222 4.222 17 H 0.077 0.923 18 C -0.007 4.007 19 N -0.924 5.924 20 Si 0.909 3.091 21 H -0.286 1.286 22 H -0.290 1.290 23 H -0.285 1.285 24 C 0.118 3.882 25 C 0.109 3.891 26 H 0.072 0.928 27 H 0.053 0.947 28 H 0.049 0.951 29 H 0.062 0.938 30 H 0.075 0.925 31 H 0.082 0.918 32 H 0.121 0.879 33 H 0.071 0.929 34 H 0.061 0.939 35 H 0.069 0.931 36 H 0.084 0.916 37 H 0.061 0.939 38 H 0.061 0.939 39 H 0.101 0.899 40 H 0.056 0.944 41 H 0.051 0.949 42 H 0.252 0.748 43 H 0.072 0.928 44 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.594 14.370 -3.777 15.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.146 4.146 3 C -0.126 4.126 4 C -0.175 4.175 5 C -0.157 4.157 6 C 0.344 3.656 7 O -0.406 6.406 8 N -0.313 5.313 9 C -0.043 4.043 10 C -0.019 4.019 11 O -0.288 6.288 12 C 0.010 3.990 13 H 0.127 0.873 14 C 0.029 3.971 15 N -0.328 5.328 16 C -0.350 4.350 17 H 0.094 0.906 18 C -0.203 4.203 19 N -0.571 5.571 20 Si 0.740 3.260 21 H -0.212 1.212 22 H -0.216 1.216 23 H -0.212 1.212 24 C -0.008 4.008 25 C 0.004 3.996 26 H 0.090 0.910 27 H 0.072 0.928 28 H 0.069 0.931 29 H 0.081 0.919 30 H 0.093 0.907 31 H 0.100 0.900 32 H 0.139 0.861 33 H 0.090 0.910 34 H 0.080 0.920 35 H 0.088 0.912 36 H 0.102 0.898 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.119 0.881 40 H 0.074 0.926 41 H 0.069 0.931 42 H 0.063 0.937 43 H 0.090 0.910 44 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 2.480 14.050 -3.327 14.650 hybrid contribution -0.983 -0.613 -0.309 1.199 sum 1.497 13.437 -3.636 14.001 Atomic orbital electron populations 1.21600 0.94634 1.02242 1.01160 1.20788 0.96653 0.93027 1.04130 1.23417 0.95179 0.97898 0.96078 1.21482 1.02913 0.96481 0.96649 1.20626 1.01635 0.91059 1.02383 1.18480 0.79976 0.80204 0.86986 1.90756 1.55234 1.67033 1.27558 1.46632 1.26220 1.35936 1.22494 1.21605 0.95655 0.99040 0.87988 1.22225 0.97915 0.92837 0.88922 1.86861 1.35431 1.76192 1.30313 1.22988 0.91946 0.93941 0.90136 0.87312 1.21658 0.83541 0.93157 0.98785 1.44200 1.06345 1.25417 1.56817 1.18976 0.88261 1.02547 1.25193 0.90556 1.24756 0.96980 0.98491 1.00100 1.69939 1.21316 1.28230 1.37659 0.86233 0.81724 0.80227 0.77816 1.21240 1.21624 1.21166 1.21950 0.96373 0.87913 0.94539 1.21816 0.98531 0.89287 0.89931 0.91025 0.92791 0.93144 0.91940 0.90658 0.89989 0.86114 0.90985 0.91996 0.91228 0.89775 0.92056 0.92058 0.88093 0.92590 0.93077 0.93741 0.90989 0.95607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.02 9.89 37.16 0.37 -1.65 16 2 C -0.11 -1.73 6.21 -27.88 -0.17 -1.91 16 3 C -0.11 -1.39 8.43 -36.13 -0.30 -1.70 16 4 C -0.17 -2.39 3.99 -102.85 -0.41 -2.80 16 5 C -0.10 -1.03 10.02 36.00 0.36 -0.67 16 6 C 0.56 9.82 4.34 -12.66 -0.06 9.76 16 7 O -0.53 -11.14 14.43 5.27 0.08 -11.07 16 8 N -0.58 -10.01 3.08 -169.90 -0.52 -10.53 16 9 C 0.08 1.13 6.03 -5.40 -0.03 1.10 16 10 C 0.06 0.88 6.72 36.63 0.25 1.13 16 11 O -0.37 -6.65 10.24 -34.45 -0.35 -7.01 16 12 C 0.07 1.34 3.82 -26.33 -0.10 1.24 16 13 H 0.11 1.95 8.14 -51.93 -0.42 1.53 16 14 C 0.15 3.72 5.02 -3.42 -0.02 3.70 16 15 N -0.60 -15.40 3.39 -171.22 -0.58 -15.98 16 16 C -0.22 -6.20 10.25 -15.06 -0.15 -6.35 16 17 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 18 C -0.01 -0.21 5.48 -17.43 -0.10 -0.30 16 19 N -0.92 -26.79 10.26 55.49 0.57 -26.22 16 20 Si 0.91 22.21 29.55 -169.99 -5.02 17.18 16 21 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 22 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 23 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 24 C 0.12 2.68 6.29 -3.04 -0.02 2.66 16 25 C 0.11 2.09 3.38 -68.24 -0.23 1.86 16 26 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 27 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 31 H 0.08 1.65 5.80 -51.93 -0.30 1.35 16 32 H 0.12 1.21 8.06 -52.48 -0.42 0.79 16 33 H 0.07 0.72 8.14 -51.92 -0.42 0.30 16 34 H 0.06 0.63 8.08 -51.93 -0.42 0.21 16 35 H 0.07 0.55 8.10 -51.93 -0.42 0.13 16 36 H 0.08 1.08 6.11 -51.93 -0.32 0.76 16 37 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.06 1.07 6.81 -51.93 -0.35 0.72 16 39 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 40 H 0.06 1.48 5.74 -51.93 -0.30 1.19 16 41 H 0.05 1.38 7.48 -51.93 -0.39 0.99 16 42 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 43 H 0.07 1.74 4.62 -51.93 -0.24 1.51 16 44 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 LS Contribution 340.53 15.07 5.13 5.13 Total: -1.00 -31.93 340.53 -8.26 -40.19 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: -6.94 Total: 2.24 kcal Atomic # 6 Polarization: 6.69 SS G_CDS: -0.62 Total: 6.07 kcal Atomic # 7 Polarization: -52.20 SS G_CDS: -0.53 Total: -52.74 kcal Atomic # 8 Polarization: -17.80 SS G_CDS: -0.28 Total: -18.08 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -31.93 -8.26 -40.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001217436688.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.882 kcal (2) G-P(sol) polarization free energy of solvation -31.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds