Wall clock time and date at job start Tue Mar 31 2020 07:03:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50698 * 109.47027 * 2 1 4 4 C 1.32993 * 120.00387 * 120.37226 * 3 2 1 5 5 C 1.50697 * 120.00375 * 184.76295 * 4 3 2 6 6 C 1.47103 * 119.99579 * 4.75906 * 4 3 2 7 7 O 1.21612 * 120.00081 * 264.79378 * 6 4 3 8 8 N 1.34777 * 119.99664 * 84.80321 * 6 4 3 9 9 C 1.44956 * 117.34199 * 5.88852 * 8 6 4 10 10 C 1.51965 * 111.93926 * 203.73335 * 9 8 6 11 11 O 1.41314 * 111.60552 * 319.69544 * 10 9 8 12 12 C 1.40852 * 118.31031 * 56.89482 * 11 10 9 13 13 H 1.09003 * 109.54011 * 188.62897 * 12 11 10 14 14 C 1.53913 * 110.30358 * 68.00916 * 12 11 10 15 15 N 1.46775 * 107.62600 * 221.41189 * 14 12 11 16 16 C 1.36942 * 125.35962 * 178.83072 * 15 14 12 17 17 H 1.08000 * 119.99589 * 180.02562 * 16 15 14 18 18 C 1.38807 * 119.99974 * 0.02562 * 16 15 14 19 19 N 1.31617 * 120.00336 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 119.99819 * 180.02562 * 18 16 15 21 21 H 1.48508 * 109.47282 * 59.99926 * 20 18 16 22 22 H 1.48498 * 109.47291 * 179.97438 * 20 18 16 23 23 H 1.48494 * 109.47294 * 300.00034 * 20 18 16 24 24 C 1.46866 * 109.27658 * 358.80038 * 15 14 12 25 25 C 1.44554 * 117.33328 * 185.63320 * 8 6 4 26 26 H 1.08999 * 109.63773 * 286.46137 * 25 8 6 27 27 H 1.09003 * 109.46878 * 300.00482 * 1 2 3 28 28 H 1.08998 * 109.47222 * 59.99793 * 1 2 3 29 29 H 1.09000 * 109.47336 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46878 * 239.99517 * 2 1 3 31 31 H 1.09000 * 109.47167 * 119.99430 * 2 1 3 32 32 H 1.08004 * 119.99969 * 300.08838 * 3 2 1 33 33 H 1.09010 * 109.46768 * 84.99117 * 5 4 3 34 34 H 1.08996 * 109.47397 * 204.99484 * 5 4 3 35 35 H 1.09003 * 109.47003 * 324.99815 * 5 4 3 36 36 H 1.09007 * 108.98534 * 324.36903 * 9 8 6 37 37 H 1.09000 * 108.98625 * 83.18055 * 9 8 6 38 38 H 1.09001 * 109.05285 * 80.24146 * 10 9 8 39 39 H 1.08995 * 109.04997 * 199.21245 * 10 9 8 40 40 H 1.09001 * 109.82311 * 340.93073 * 14 12 11 41 41 H 1.08995 * 109.82721 * 101.79855 * 14 12 11 42 42 H 0.97005 * 119.99975 * 180.02562 * 19 18 16 43 43 H 1.08996 * 110.06519 * 137.03834 * 24 15 14 44 44 H 1.09001 * 110.06917 * 258.56658 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.8030 1.8537 0.9936 5 6 3.2170 3.3016 1.0504 6 6 3.2513 0.9191 2.0374 7 8 2.6292 0.8260 3.0782 8 7 4.3517 0.1662 1.8403 9 6 5.1228 0.4161 0.6385 10 6 5.9441 -0.7951 0.2288 11 8 6.5167 -1.4386 1.3491 12 6 5.6593 -1.8850 2.3736 13 1 6.2519 -2.2164 3.2263 14 6 4.7866 -3.0487 1.8704 15 7 3.4291 -2.8426 2.3889 16 6 2.3546 -3.6549 2.1419 17 1 1.3908 -3.4202 2.5690 18 6 2.5042 -4.7798 1.3427 19 7 3.6789 -5.0662 0.8226 20 14 1.0384 -5.8875 1.0052 21 1 -0.0274 -5.1056 0.3283 22 1 1.4583 -7.0116 0.1304 23 1 0.5187 -6.4254 2.2880 24 6 3.4046 -1.6284 3.2148 25 6 4.6698 -0.8207 2.8474 26 1 5.0581 -0.3245 3.7368 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5137 0.8900 32 1 1.7702 2.0862 -0.8093 33 1 2.4367 3.8836 1.5412 34 1 4.1461 3.3922 1.6130 35 1 3.3673 3.6765 0.0379 36 1 4.4418 0.6738 -0.1727 37 1 5.7953 1.2552 0.8167 38 1 5.3000 -1.5007 -0.2961 39 1 6.7410 -0.4743 -0.4419 40 1 4.7693 -3.0534 0.7806 41 1 5.1843 -3.9947 2.2377 42 1 3.7833 -5.8521 0.2637 43 1 2.5112 -1.0443 2.9947 44 1 3.4272 -1.8944 4.2717 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001217436688.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:57 Heat of formation + Delta-G solvation = -42.580474 kcal Electronic energy + Delta-G solvation = -26202.479540 eV Core-core repulsion = 22734.739762 eV Total energy + Delta-G solvation = -3467.739778 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.27254 -39.97713 -37.72263 -36.76566 -36.03383 -34.30137 -33.09224 -31.68412 -29.58970 -29.11631 -27.88759 -26.63778 -24.71644 -24.34908 -23.14168 -22.15297 -20.57343 -19.48888 -19.00410 -18.28704 -17.63936 -16.97659 -16.83123 -16.66021 -16.16963 -15.80312 -15.56376 -15.45429 -15.16207 -14.55733 -14.41510 -14.08815 -13.87271 -13.85224 -13.73849 -13.56978 -13.17010 -13.02970 -12.96004 -12.85347 -12.81503 -12.45789 -12.21227 -12.13325 -12.00409 -11.91705 -11.83327 -11.65123 -10.91445 -10.75635 -10.44717 -9.86836 -9.55803 -8.92848 -7.88776 -5.24919 0.80365 1.40504 1.43216 1.49833 1.52100 1.92728 2.44041 2.74869 3.28212 3.31538 3.59284 3.67958 3.72966 3.83708 3.94319 4.07610 4.11099 4.19368 4.35485 4.36739 4.42984 4.50808 4.52931 4.54047 4.70381 4.76496 4.83141 4.84722 4.94412 4.97058 4.97972 5.10790 5.20050 5.26307 5.37242 5.40285 5.45956 5.60107 5.63090 5.69358 6.13911 6.22364 6.39889 7.05020 7.09417 7.71257 8.33724 9.20126 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.014355 B = 0.007301 C = 0.005755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1950.113653 B = 3834.381184 C = 4864.502227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.110 4.110 3 C -0.097 4.097 4 C -0.177 4.177 5 C -0.094 4.094 6 C 0.548 3.452 7 O -0.574 6.574 8 N -0.585 5.585 9 C 0.078 3.922 10 C 0.053 3.947 11 O -0.371 6.371 12 C 0.085 3.915 13 H 0.126 0.874 14 C 0.167 3.833 15 N -0.613 5.613 16 C -0.240 4.240 17 H 0.069 0.931 18 C -0.055 4.055 19 N -0.946 5.946 20 Si 0.973 3.027 21 H -0.278 1.278 22 H -0.289 1.289 23 H -0.280 1.280 24 C 0.119 3.881 25 C 0.119 3.881 26 H 0.088 0.912 27 H 0.047 0.953 28 H 0.085 0.915 29 H 0.041 0.959 30 H 0.072 0.928 31 H 0.031 0.969 32 H 0.166 0.834 33 H 0.075 0.925 34 H 0.062 0.938 35 H 0.103 0.897 36 H 0.099 0.901 37 H 0.097 0.903 38 H 0.028 0.972 39 H 0.146 0.854 40 H 0.027 0.973 41 H 0.015 0.985 42 H 0.248 0.752 43 H 0.056 0.944 44 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.963 16.994 -5.344 18.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.148 4.148 3 C -0.115 4.115 4 C -0.180 4.180 5 C -0.151 4.151 6 C 0.338 3.662 7 O -0.454 6.454 8 N -0.317 5.317 9 C -0.044 4.044 10 C -0.024 4.024 11 O -0.288 6.288 12 C 0.025 3.975 13 H 0.144 0.856 14 C 0.041 3.959 15 N -0.341 5.341 16 C -0.368 4.368 17 H 0.087 0.913 18 C -0.248 4.248 19 N -0.594 5.594 20 Si 0.800 3.200 21 H -0.204 1.204 22 H -0.214 1.214 23 H -0.206 1.206 24 C -0.007 4.007 25 C 0.014 3.986 26 H 0.106 0.894 27 H 0.066 0.934 28 H 0.104 0.896 29 H 0.060 0.940 30 H 0.090 0.910 31 H 0.050 0.950 32 H 0.184 0.816 33 H 0.094 0.906 34 H 0.081 0.919 35 H 0.122 0.878 36 H 0.117 0.883 37 H 0.115 0.885 38 H 0.047 0.953 39 H 0.164 0.836 40 H 0.045 0.955 41 H 0.033 0.967 42 H 0.058 0.942 43 H 0.073 0.927 44 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 2.867 16.703 -4.908 17.644 hybrid contribution -1.123 -1.464 0.166 1.853 sum 1.744 15.239 -4.743 16.055 Atomic orbital electron populations 1.21568 0.93705 1.01398 1.02538 1.20722 0.97601 0.94961 1.01467 1.23533 0.94439 0.96412 0.97108 1.21614 1.03465 0.97587 0.95341 1.20689 1.01629 0.88128 1.04620 1.19248 0.79277 0.80294 0.87331 1.90725 1.56376 1.68587 1.29746 1.46781 1.26833 1.35080 1.23033 1.21860 0.96042 0.99376 0.87095 1.22523 0.99173 0.92425 0.88240 1.86870 1.34982 1.76374 1.30621 1.22720 0.91559 0.92185 0.91027 0.85596 1.21395 0.83676 0.93882 0.96936 1.44382 1.06481 1.26111 1.57115 1.19204 0.88870 1.03330 1.25439 0.91290 1.25516 0.99606 0.99710 0.99999 1.70150 1.22961 1.28340 1.37958 0.85251 0.78769 0.78263 0.77671 1.20402 1.21441 1.20617 1.21958 0.97872 0.87190 0.93673 1.21580 0.96208 0.89449 0.91389 0.89376 0.93381 0.89647 0.93975 0.90996 0.95026 0.81635 0.90635 0.91918 0.87794 0.88293 0.88483 0.95320 0.83612 0.95457 0.96683 0.94221 0.92659 0.96300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.84 9.89 71.98 0.71 -3.13 16 2 C -0.11 -3.48 6.21 29.85 0.19 -3.29 16 3 C -0.10 -2.24 8.43 24.52 0.21 -2.04 16 4 C -0.18 -4.46 3.99 -18.70 -0.07 -4.54 16 5 C -0.09 -1.55 10.02 71.24 0.71 -0.84 16 6 C 0.55 19.08 4.34 86.57 0.38 19.46 16 7 O -0.57 -24.73 14.43 -4.07 -0.06 -24.79 16 8 N -0.59 -19.70 3.08 -809.71 -2.50 -22.20 16 9 C 0.08 1.99 6.03 86.33 0.52 2.51 16 10 C 0.05 1.51 6.72 71.64 0.48 1.99 16 11 O -0.37 -12.89 10.24 -146.17 -1.50 -14.39 16 12 C 0.08 3.30 3.82 30.85 0.12 3.42 16 13 H 0.13 4.47 8.14 -2.39 -0.02 4.45 16 14 C 0.17 8.43 5.02 86.64 0.43 8.86 16 15 N -0.61 -33.11 3.39 -695.61 -2.36 -35.47 16 16 C -0.24 -14.04 10.25 84.03 0.86 -13.18 16 17 H 0.07 4.03 7.83 -2.91 -0.02 4.00 16 18 C -0.05 -3.18 5.48 84.86 0.47 -2.71 16 19 N -0.95 -56.99 10.26 21.65 0.22 -56.77 16 20 Si 0.97 46.80 29.55 68.60 2.03 48.82 16 21 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 22 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 23 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 24 C 0.12 5.62 6.29 86.83 0.55 6.17 16 25 C 0.12 4.58 3.38 45.83 0.15 4.74 16 26 H 0.09 3.13 8.14 -2.39 -0.02 3.11 16 27 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 28 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 29 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 31 H 0.03 1.32 5.80 -2.39 -0.01 1.30 16 32 H 0.17 2.43 8.06 -2.91 -0.02 2.41 16 33 H 0.08 1.23 8.14 -2.38 -0.02 1.21 16 34 H 0.06 1.04 8.08 -2.39 -0.02 1.02 16 35 H 0.10 1.03 8.10 -2.39 -0.02 1.02 16 36 H 0.10 2.24 6.11 -2.38 -0.01 2.22 16 37 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 38 H 0.03 1.01 6.81 -2.39 -0.02 0.99 16 39 H 0.15 2.84 8.14 -2.39 -0.02 2.82 16 40 H 0.03 1.53 5.74 -2.39 -0.01 1.51 16 41 H 0.01 0.85 7.48 -2.39 -0.02 0.84 16 42 H 0.25 14.57 8.31 -92.70 -0.77 13.80 16 43 H 0.06 2.84 4.62 -2.39 -0.01 2.83 16 44 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 Total: -1.00 -74.60 340.53 2.53 -72.07 By element: Atomic # 1 Polarization: 14.31 SS G_CDS: 0.98 Total: 15.29 kcal Atomic # 6 Polarization: 11.73 SS G_CDS: 5.70 Total: 17.43 kcal Atomic # 7 Polarization: -109.80 SS G_CDS: -4.63 Total: -114.43 kcal Atomic # 8 Polarization: -37.63 SS G_CDS: -1.56 Total: -39.18 kcal Atomic # 14 Polarization: 46.80 SS G_CDS: 2.03 Total: 48.82 kcal Total: -74.60 2.53 -72.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001217436688.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.491 kcal (2) G-P(sol) polarization free energy of solvation -74.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds