Wall clock time and date at job start Tue Mar 31 2020 07:16:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50699 * 109.47284 * 2 1 4 4 C 1.50697 * 119.99734 * 274.99888 * 3 2 1 5 5 C 1.32988 * 120.00103 * 94.99916 * 3 2 1 6 6 C 1.47103 * 120.00355 * 172.89456 * 5 3 2 7 7 O 1.21614 * 119.99696 * 352.65179 * 6 5 3 8 8 N 1.34773 * 120.00502 * 172.64382 * 6 5 3 9 9 C 1.44962 * 117.32085 * 357.53454 * 8 6 5 10 10 C 1.51975 * 111.88485 * 203.69940 * 9 8 6 11 11 O 1.41317 * 111.53768 * 319.33082 * 10 9 8 12 12 C 1.40792 * 118.40144 * 56.93664 * 11 10 9 13 13 H 1.09003 * 109.34921 * 188.31092 * 12 11 10 14 14 C 1.54201 * 110.23023 * 67.70236 * 12 11 10 15 15 N 1.46871 * 106.39337 * 210.33922 * 14 12 11 16 16 C 1.36939 * 125.36513 * 197.81650 * 15 14 12 17 17 H 1.08000 * 120.00324 * 180.02562 * 16 15 14 18 18 C 1.38815 * 119.99922 * 0.02992 * 16 15 14 19 19 N 1.31621 * 119.99718 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00028 * 179.97438 * 18 16 15 21 21 H 1.48490 * 109.47258 * 59.99482 * 20 18 16 22 22 H 1.48498 * 109.46802 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.46762 * 299.99445 * 20 18 16 24 24 C 1.46786 * 109.27278 * 17.83785 * 15 14 12 25 25 C 1.44536 * 117.32398 * 177.55120 * 8 6 5 26 26 H 1.08998 * 109.49054 * 285.86243 * 25 8 6 27 27 H 1.08991 * 109.47005 * 60.00046 * 1 2 3 28 28 H 1.09004 * 109.47102 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46676 * 299.99727 * 1 2 3 30 30 H 1.08999 * 109.47237 * 239.99765 * 2 1 3 31 31 H 1.09004 * 109.47294 * 119.99962 * 2 1 3 32 32 H 1.08998 * 109.47350 * 264.29822 * 4 3 2 33 33 H 1.08997 * 109.47498 * 24.30187 * 4 3 2 34 34 H 1.09001 * 109.47243 * 144.29761 * 4 3 2 35 35 H 1.07999 * 119.99845 * 352.90085 * 5 3 2 36 36 H 1.08993 * 108.99989 * 324.32437 * 9 8 6 37 37 H 1.09011 * 108.99757 * 83.08654 * 9 8 6 38 38 H 1.09003 * 109.05902 * 79.85621 * 10 9 8 39 39 H 1.08991 * 109.07000 * 198.79679 * 10 9 8 40 40 H 1.08997 * 110.07041 * 91.10154 * 14 12 11 41 41 H 1.08999 * 110.11225 * 329.59382 * 14 12 11 42 42 H 0.97004 * 119.99784 * 180.02562 * 19 18 16 43 43 H 1.08991 * 109.83287 * 239.35568 * 24 15 14 44 44 H 1.09003 * 109.82794 * 118.39029 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.1763 2.1690 -1.3001 5 6 2.3487 2.0143 1.1473 6 6 2.9847 3.3407 1.1385 7 8 3.3428 3.8363 0.0873 8 7 3.1703 4.0068 2.2953 9 6 2.6722 3.3869 3.5074 10 6 2.4091 4.4099 4.6000 11 8 3.4226 5.3938 4.6445 12 6 3.6849 6.1381 3.4785 13 1 4.5796 6.7422 3.6294 14 6 2.4893 7.0552 3.1511 15 7 2.4685 7.2033 1.6900 16 6 1.8055 8.1844 1.0022 17 1 1.8488 8.2111 -0.0766 18 6 1.0778 9.1447 1.6915 19 7 1.0247 9.1119 3.0063 20 14 0.1740 10.4835 0.7533 21 1 -0.8219 9.8638 -0.1571 22 1 -0.5223 11.3769 1.7136 23 1 1.1476 11.2738 -0.0422 24 6 3.2698 6.1336 1.0831 25 6 3.8493 5.2808 2.2257 26 1 4.9130 5.1170 2.0532 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 3.2051 2.0917 -1.6519 33 1 1.5050 1.7388 -2.0433 34 1 1.9230 3.2179 -1.1457 35 1 2.1387 1.5223 2.0856 36 1 1.7440 2.8619 3.2818 37 1 3.4076 2.6664 3.8656 38 1 1.4509 4.8940 4.4111 39 1 2.3654 3.9000 5.5623 40 1 2.6236 8.0280 3.6239 41 1 1.5612 6.5979 3.4940 42 1 0.5159 9.7827 3.4880 43 1 4.0804 6.5661 0.4968 44 1 2.6387 5.5159 0.4442 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001217806175.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:16:13 Heat of formation + Delta-G solvation = -15.171890 kcal Electronic energy + Delta-G solvation = -25248.772649 eV Core-core repulsion = 21782.221397 eV Total energy + Delta-G solvation = -3466.551253 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.75905 -38.63048 -36.35098 -35.75000 -34.74771 -32.40513 -30.97810 -29.96798 -28.39299 -27.75857 -26.76969 -24.69022 -24.04708 -23.24451 -21.39748 -20.08476 -18.88721 -17.93244 -17.33536 -16.92451 -16.43856 -15.50994 -15.23718 -15.14837 -14.64395 -14.56047 -14.22577 -13.98096 -13.73284 -13.58607 -13.11566 -12.80530 -12.62261 -12.38941 -12.17376 -12.09842 -12.00058 -11.68816 -11.45772 -11.24253 -11.05006 -11.03710 -10.81377 -10.66046 -10.41116 -10.25584 -10.06119 -9.71701 -9.20434 -9.06680 -8.85293 -8.55652 -8.13221 -6.75835 -5.64189 -3.02224 1.43609 3.17756 3.43442 3.47165 3.48871 3.49268 4.13652 4.47926 4.53980 4.70569 4.90329 4.98047 5.06507 5.09347 5.19890 5.25576 5.39670 5.41127 5.46527 5.58166 5.60268 5.68406 5.71386 5.74947 5.77744 5.88744 5.89086 5.98511 5.99950 6.13689 6.16550 6.30265 6.51577 6.58354 6.67446 6.89850 7.22646 7.40825 7.60463 7.65027 7.76736 7.92872 8.33741 8.50443 9.25846 9.86482 10.49600 11.42559 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.015242 B = 0.005116 C = 0.004343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1836.529538 B = 5472.118490 C = 6445.977883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.095 4.095 3 C -0.032 4.032 4 C -0.123 4.123 5 C -0.231 4.231 6 C 0.538 3.462 7 O -0.525 6.525 8 N -0.587 5.587 9 C 0.081 3.919 10 C 0.057 3.943 11 O -0.371 6.371 12 C 0.067 3.933 13 H 0.112 0.888 14 C 0.141 3.859 15 N -0.604 5.604 16 C -0.220 4.220 17 H 0.078 0.922 18 C -0.011 4.011 19 N -0.925 5.925 20 Si 0.914 3.086 21 H -0.286 1.286 22 H -0.290 1.290 23 H -0.285 1.285 24 C 0.126 3.874 25 C 0.113 3.887 26 H 0.068 0.932 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.077 0.923 31 H 0.073 0.927 32 H 0.078 0.922 33 H 0.052 0.948 34 H 0.091 0.909 35 H 0.125 0.875 36 H 0.082 0.918 37 H 0.063 0.937 38 H 0.059 0.941 39 H 0.102 0.898 40 H 0.098 0.902 41 H 0.021 0.979 42 H 0.252 0.748 43 H 0.031 0.969 44 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.961 -18.299 0.085 18.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.132 4.132 3 C -0.034 4.034 4 C -0.179 4.179 5 C -0.252 4.252 6 C 0.329 3.671 7 O -0.404 6.404 8 N -0.321 5.321 9 C -0.043 4.043 10 C -0.020 4.020 11 O -0.288 6.288 12 C 0.008 3.992 13 H 0.130 0.870 14 C 0.016 3.984 15 N -0.332 5.332 16 C -0.348 4.348 17 H 0.096 0.904 18 C -0.207 4.207 19 N -0.573 5.573 20 Si 0.745 3.255 21 H -0.213 1.213 22 H -0.216 1.216 23 H -0.211 1.211 24 C 0.000 4.000 25 C 0.009 3.991 26 H 0.086 0.914 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.095 0.905 31 H 0.091 0.909 32 H 0.096 0.904 33 H 0.071 0.929 34 H 0.110 0.890 35 H 0.143 0.857 36 H 0.100 0.900 37 H 0.081 0.919 38 H 0.077 0.923 39 H 0.120 0.880 40 H 0.116 0.884 41 H 0.039 0.961 42 H 0.063 0.937 43 H 0.049 0.951 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 2.137 -17.781 -0.193 17.910 hybrid contribution -0.725 0.543 -0.480 1.025 sum 1.412 -17.238 -0.673 17.309 Atomic orbital electron populations 1.21730 0.94277 1.01857 1.02664 1.20749 0.96645 0.92762 1.03085 1.22531 0.90607 0.94643 0.95606 1.21126 1.02088 1.01547 0.93150 1.22506 1.07276 0.96690 0.98728 1.18585 0.79722 0.85410 0.83365 1.90730 1.50749 1.68468 1.30468 1.46566 1.58620 1.19855 1.07020 1.21645 0.99723 0.96495 0.86454 1.22238 0.92627 0.89097 0.98051 1.86842 1.56101 1.50651 1.35193 1.23070 1.01806 0.91582 0.82723 0.87017 1.22036 0.92076 0.98885 0.85452 1.44270 1.57856 1.29519 1.01508 1.19031 1.22707 1.02490 0.90591 0.90436 1.24786 1.00693 0.99399 0.95774 1.69862 1.45745 1.36670 1.05053 0.86153 0.79472 0.81492 0.78408 1.21295 1.21593 1.21110 1.21782 0.95299 0.89372 0.93521 1.21539 0.95586 0.83276 0.98712 0.91428 0.92255 0.92258 0.92308 0.90477 0.90863 0.90383 0.92940 0.89037 0.85713 0.90005 0.91920 0.92324 0.87997 0.88437 0.96148 0.93734 0.95087 0.92097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.90 37.16 0.37 -0.81 16 2 C -0.10 -0.81 6.08 -27.88 -0.17 -0.98 16 3 C -0.03 -0.38 5.36 -101.17 -0.54 -0.92 16 4 C -0.12 -1.60 8.47 36.00 0.30 -1.30 16 5 C -0.23 -3.02 8.53 -37.81 -0.32 -3.35 16 6 C 0.54 9.20 6.81 -12.67 -0.09 9.12 16 7 O -0.52 -10.32 10.38 5.27 0.05 -10.27 16 8 N -0.59 -10.10 3.09 -170.39 -0.53 -10.62 16 9 C 0.08 1.09 5.64 -5.39 -0.03 1.06 16 10 C 0.06 0.85 6.74 36.64 0.25 1.10 16 11 O -0.37 -6.75 10.25 -34.36 -0.35 -7.10 16 12 C 0.07 1.35 3.91 -26.26 -0.10 1.25 16 13 H 0.11 2.14 8.14 -51.93 -0.42 1.72 16 14 C 0.14 3.52 5.26 -3.21 -0.02 3.51 16 15 N -0.60 -16.16 3.39 -171.42 -0.58 -16.75 16 16 C -0.22 -6.36 10.25 -15.06 -0.15 -6.52 16 17 H 0.08 2.19 7.83 -52.49 -0.41 1.78 16 18 C -0.01 -0.32 5.48 -17.43 -0.10 -0.42 16 19 N -0.92 -27.43 10.18 55.49 0.56 -26.87 16 20 Si 0.91 22.61 29.55 -169.99 -5.02 17.59 16 21 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 22 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 23 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 24 C 0.13 2.93 6.05 -3.42 -0.02 2.91 16 25 C 0.11 2.22 3.33 -68.67 -0.23 1.99 16 26 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 27 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 28 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.07 0.54 8.03 -51.93 -0.42 0.13 16 32 H 0.08 1.04 8.02 -51.93 -0.42 0.62 16 33 H 0.05 0.56 8.09 -51.93 -0.42 0.14 16 34 H 0.09 1.49 6.19 -51.93 -0.32 1.17 16 35 H 0.13 1.31 6.39 -52.49 -0.34 0.97 16 36 H 0.08 0.95 6.34 -51.93 -0.33 0.62 16 37 H 0.06 0.71 8.14 -51.92 -0.42 0.29 16 38 H 0.06 0.99 6.73 -51.93 -0.35 0.64 16 39 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 40 H 0.10 2.73 6.25 -51.93 -0.32 2.41 16 41 H 0.02 0.56 6.48 -51.93 -0.34 0.22 16 42 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 43 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.06 1.51 5.22 -51.93 -0.27 1.24 16 LS Contribution 337.13 15.07 5.08 5.08 Total: -1.00 -32.71 337.13 -8.50 -41.22 By element: Atomic # 1 Polarization: 7.96 SS G_CDS: -6.87 Total: 1.09 kcal Atomic # 6 Polarization: 7.49 SS G_CDS: -0.85 Total: 6.64 kcal Atomic # 7 Polarization: -53.70 SS G_CDS: -0.54 Total: -54.24 kcal Atomic # 8 Polarization: -17.08 SS G_CDS: -0.30 Total: -17.37 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -5.02 Total: 17.59 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -32.71 -8.50 -41.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001217806175.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.043 kcal (2) G-P(sol) polarization free energy of solvation -32.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds