Wall clock time and date at job start Tue Mar 31 2020 07:16:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50699 * 109.47284 * 2 1 4 4 C 1.50697 * 119.99734 * 274.99888 * 3 2 1 5 5 C 1.32988 * 120.00103 * 94.99916 * 3 2 1 6 6 C 1.47103 * 120.00355 * 172.89456 * 5 3 2 7 7 O 1.21614 * 119.99696 * 352.65179 * 6 5 3 8 8 N 1.34773 * 120.00502 * 172.64382 * 6 5 3 9 9 C 1.44962 * 117.32085 * 357.53454 * 8 6 5 10 10 C 1.51975 * 111.88485 * 203.69940 * 9 8 6 11 11 O 1.41317 * 111.53768 * 319.33082 * 10 9 8 12 12 C 1.40792 * 118.40144 * 56.93664 * 11 10 9 13 13 H 1.09003 * 109.34921 * 188.31092 * 12 11 10 14 14 C 1.54201 * 110.23023 * 67.70236 * 12 11 10 15 15 N 1.46871 * 106.39337 * 210.33922 * 14 12 11 16 16 C 1.36939 * 125.36513 * 197.81650 * 15 14 12 17 17 H 1.08000 * 120.00324 * 180.02562 * 16 15 14 18 18 C 1.38815 * 119.99922 * 0.02992 * 16 15 14 19 19 N 1.31621 * 119.99718 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00028 * 179.97438 * 18 16 15 21 21 H 1.48490 * 109.47258 * 59.99482 * 20 18 16 22 22 H 1.48498 * 109.46802 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.46762 * 299.99445 * 20 18 16 24 24 C 1.46786 * 109.27278 * 17.83785 * 15 14 12 25 25 C 1.44536 * 117.32398 * 177.55120 * 8 6 5 26 26 H 1.08998 * 109.49054 * 285.86243 * 25 8 6 27 27 H 1.08991 * 109.47005 * 60.00046 * 1 2 3 28 28 H 1.09004 * 109.47102 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46676 * 299.99727 * 1 2 3 30 30 H 1.08999 * 109.47237 * 239.99765 * 2 1 3 31 31 H 1.09004 * 109.47294 * 119.99962 * 2 1 3 32 32 H 1.08998 * 109.47350 * 264.29822 * 4 3 2 33 33 H 1.08997 * 109.47498 * 24.30187 * 4 3 2 34 34 H 1.09001 * 109.47243 * 144.29761 * 4 3 2 35 35 H 1.07999 * 119.99845 * 352.90085 * 5 3 2 36 36 H 1.08993 * 108.99989 * 324.32437 * 9 8 6 37 37 H 1.09011 * 108.99757 * 83.08654 * 9 8 6 38 38 H 1.09003 * 109.05902 * 79.85621 * 10 9 8 39 39 H 1.08991 * 109.07000 * 198.79679 * 10 9 8 40 40 H 1.08997 * 110.07041 * 91.10154 * 14 12 11 41 41 H 1.08999 * 110.11225 * 329.59382 * 14 12 11 42 42 H 0.97004 * 119.99784 * 180.02562 * 19 18 16 43 43 H 1.08991 * 109.83287 * 239.35568 * 24 15 14 44 44 H 1.09003 * 109.82794 * 118.39029 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.1763 2.1690 -1.3001 5 6 2.3487 2.0143 1.1473 6 6 2.9847 3.3407 1.1385 7 8 3.3428 3.8363 0.0873 8 7 3.1703 4.0068 2.2953 9 6 2.6722 3.3869 3.5074 10 6 2.4091 4.4099 4.6000 11 8 3.4226 5.3938 4.6445 12 6 3.6849 6.1381 3.4785 13 1 4.5796 6.7422 3.6294 14 6 2.4893 7.0552 3.1511 15 7 2.4685 7.2033 1.6900 16 6 1.8055 8.1844 1.0022 17 1 1.8488 8.2111 -0.0766 18 6 1.0778 9.1447 1.6915 19 7 1.0247 9.1119 3.0063 20 14 0.1740 10.4835 0.7533 21 1 -0.8219 9.8638 -0.1571 22 1 -0.5223 11.3769 1.7136 23 1 1.1476 11.2738 -0.0422 24 6 3.2698 6.1336 1.0831 25 6 3.8493 5.2808 2.2257 26 1 4.9130 5.1170 2.0532 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 3.2051 2.0917 -1.6519 33 1 1.5050 1.7388 -2.0433 34 1 1.9230 3.2179 -1.1457 35 1 2.1387 1.5223 2.0856 36 1 1.7440 2.8619 3.2818 37 1 3.4076 2.6664 3.8656 38 1 1.4509 4.8940 4.4111 39 1 2.3654 3.9000 5.5623 40 1 2.6236 8.0280 3.6239 41 1 1.5612 6.5979 3.4940 42 1 0.5159 9.7827 3.4880 43 1 4.0804 6.5661 0.4968 44 1 2.6387 5.5159 0.4442 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001217806175.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:16:13 Heat of formation + Delta-G solvation = -36.771548 kcal Electronic energy + Delta-G solvation = -25249.709281 eV Core-core repulsion = 21782.221397 eV Total energy + Delta-G solvation = -3467.487884 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.16810 -40.00901 -37.74178 -37.12612 -36.08768 -34.34875 -31.95853 -31.57223 -29.72250 -29.47258 -28.19751 -26.52857 -25.03046 -24.61150 -22.87658 -21.73272 -20.29205 -19.22920 -18.94843 -18.34804 -18.03289 -16.96505 -16.77956 -16.49686 -16.21434 -15.68843 -15.58267 -15.31398 -15.05844 -14.87930 -14.54944 -14.30290 -13.94814 -13.73883 -13.58684 -13.44533 -13.09354 -13.04591 -12.94637 -12.79881 -12.46870 -12.30375 -12.26542 -12.14419 -12.06818 -11.85863 -11.72227 -11.64176 -10.78038 -10.71122 -10.25414 -10.08666 -9.48997 -8.91463 -7.85354 -5.27590 0.39791 1.42096 1.45963 1.52673 1.88413 2.28290 2.45076 2.75854 3.26441 3.37392 3.60798 3.72373 3.78514 3.88423 3.94104 4.07509 4.16337 4.24048 4.34867 4.37594 4.43922 4.45612 4.48541 4.63729 4.72596 4.77655 4.83033 4.86315 4.99105 5.02082 5.04384 5.10467 5.19220 5.35750 5.38518 5.45789 5.57317 5.59288 5.65871 5.68515 6.18383 6.31136 6.45124 7.04693 7.21510 7.71027 8.32833 9.18857 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.015242 B = 0.005116 C = 0.004343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1836.529538 B = 5472.118490 C = 6445.977883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.090 4.090 3 C -0.020 4.020 4 C -0.123 4.123 5 C -0.244 4.244 6 C 0.526 3.474 7 O -0.563 6.563 8 N -0.596 5.596 9 C 0.077 3.923 10 C 0.049 3.951 11 O -0.373 6.373 12 C 0.085 3.915 13 H 0.122 0.878 14 C 0.152 3.848 15 N -0.622 5.622 16 C -0.247 4.247 17 H 0.074 0.926 18 C -0.060 4.060 19 N -0.947 5.947 20 Si 0.982 3.018 21 H -0.280 1.280 22 H -0.287 1.287 23 H -0.275 1.275 24 C 0.128 3.872 25 C 0.125 3.875 26 H 0.081 0.919 27 H 0.050 0.950 28 H 0.079 0.921 29 H 0.052 0.948 30 H 0.091 0.909 31 H 0.093 0.907 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.052 0.948 35 H 0.159 0.841 36 H 0.105 0.895 37 H 0.099 0.901 38 H 0.029 0.971 39 H 0.148 0.852 40 H 0.063 0.937 41 H -0.007 1.007 42 H 0.249 0.751 43 H 0.021 0.979 44 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.751 -21.017 0.597 21.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.127 4.127 3 C -0.022 4.022 4 C -0.179 4.179 5 C -0.264 4.264 6 C 0.319 3.681 7 O -0.445 6.445 8 N -0.329 5.329 9 C -0.045 4.045 10 C -0.027 4.027 11 O -0.290 6.290 12 C 0.026 3.974 13 H 0.139 0.861 14 C 0.026 3.974 15 N -0.350 5.350 16 C -0.375 4.375 17 H 0.092 0.908 18 C -0.253 4.253 19 N -0.596 5.596 20 Si 0.810 3.190 21 H -0.207 1.207 22 H -0.213 1.213 23 H -0.201 1.201 24 C 0.003 3.997 25 C 0.019 3.981 26 H 0.099 0.901 27 H 0.069 0.931 28 H 0.098 0.902 29 H 0.071 0.929 30 H 0.109 0.891 31 H 0.112 0.888 32 H 0.090 0.910 33 H 0.093 0.907 34 H 0.071 0.929 35 H 0.176 0.824 36 H 0.123 0.877 37 H 0.117 0.883 38 H 0.048 0.952 39 H 0.166 0.834 40 H 0.081 0.919 41 H 0.011 0.989 42 H 0.059 0.941 43 H 0.039 0.961 44 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 1.930 -20.538 0.337 20.632 hybrid contribution -0.711 1.351 -0.687 1.674 sum 1.219 -19.188 -0.350 19.230 Atomic orbital electron populations 1.21741 0.93789 1.03002 1.01995 1.20817 0.96812 0.90189 1.04846 1.22857 0.88840 0.96144 0.94348 1.21047 1.02212 0.99694 0.94945 1.22554 1.08351 0.94811 1.00685 1.19362 0.79351 0.86682 0.82683 1.90715 1.52361 1.69702 1.31702 1.46728 1.58648 1.18868 1.08641 1.21942 1.01858 0.96307 0.84426 1.22596 0.90304 0.88716 1.01123 1.86845 1.56978 1.51269 1.33938 1.22722 0.99624 0.91252 0.83833 0.86086 1.21769 0.93170 0.98084 0.84344 1.44535 1.57963 1.29989 1.02476 1.19343 1.23666 1.03671 0.90867 0.90837 1.25641 1.01444 1.01474 0.96754 1.70108 1.46009 1.37123 1.06338 0.85105 0.78229 0.78508 0.77189 1.20666 1.21305 1.20133 1.21788 0.94319 0.88838 0.94773 1.21231 0.96285 0.84068 0.96469 0.90073 0.93133 0.90213 0.92865 0.89058 0.88819 0.90978 0.90719 0.92885 0.82393 0.87733 0.88330 0.95225 0.83406 0.91913 0.98901 0.94126 0.96095 0.93682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 9.90 71.98 0.71 -1.18 16 2 C -0.09 -1.18 6.08 29.85 0.18 -1.00 16 3 C -0.02 -0.43 5.36 -17.62 -0.09 -0.53 16 4 C -0.12 -3.16 8.47 71.23 0.60 -2.56 16 5 C -0.24 -5.82 8.53 23.43 0.20 -5.62 16 6 C 0.53 17.73 6.81 86.57 0.59 18.32 16 7 O -0.56 -22.82 10.38 -4.08 -0.04 -22.87 16 8 N -0.60 -19.88 3.09 -811.25 -2.51 -22.39 16 9 C 0.08 1.85 5.64 86.33 0.49 2.33 16 10 C 0.05 1.36 6.74 71.64 0.48 1.84 16 11 O -0.37 -13.16 10.25 -145.88 -1.50 -14.65 16 12 C 0.09 3.46 3.91 30.90 0.12 3.58 16 13 H 0.12 4.64 8.14 -2.39 -0.02 4.62 16 14 C 0.15 7.92 5.26 86.72 0.46 8.38 16 15 N -0.62 -34.82 3.39 -696.24 -2.36 -37.18 16 16 C -0.25 -14.85 10.25 84.03 0.86 -13.99 16 17 H 0.07 4.34 7.83 -2.91 -0.02 4.32 16 18 C -0.06 -3.56 5.48 84.86 0.47 -3.09 16 19 N -0.95 -58.07 10.18 21.65 0.22 -57.85 16 20 Si 0.98 47.40 29.55 68.60 2.03 49.43 16 21 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 22 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 23 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 24 C 0.13 6.22 6.05 86.63 0.52 6.74 16 25 C 0.12 4.91 3.33 45.56 0.15 5.06 16 26 H 0.08 2.98 8.14 -2.39 -0.02 2.96 16 27 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.08 0.72 8.14 -2.38 -0.02 0.70 16 29 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.09 1.00 8.14 -2.39 -0.02 0.99 16 31 H 0.09 0.93 8.03 -2.38 -0.02 0.91 16 32 H 0.07 1.93 8.02 -2.39 -0.02 1.91 16 33 H 0.07 1.53 8.09 -2.39 -0.02 1.51 16 34 H 0.05 1.81 6.19 -2.39 -0.01 1.79 16 35 H 0.16 2.63 6.39 -2.91 -0.02 2.61 16 36 H 0.10 2.06 6.34 -2.39 -0.02 2.04 16 37 H 0.10 1.76 8.14 -2.38 -0.02 1.74 16 38 H 0.03 0.99 6.73 -2.39 -0.02 0.98 16 39 H 0.15 2.73 8.14 -2.39 -0.02 2.71 16 40 H 0.06 3.70 6.25 -2.39 -0.01 3.68 16 41 H -0.01 -0.39 6.48 -2.39 -0.02 -0.40 16 42 H 0.25 14.78 8.31 -92.71 -0.77 14.01 16 43 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16 44 H 0.05 2.36 5.22 -2.39 -0.01 2.35 16 Total: -1.00 -75.45 337.13 2.57 -72.87 By element: Atomic # 1 Polarization: 13.34 SS G_CDS: 0.99 Total: 14.33 kcal Atomic # 6 Polarization: 12.56 SS G_CDS: 5.74 Total: 18.30 kcal Atomic # 7 Polarization: -112.77 SS G_CDS: -4.65 Total: -117.41 kcal Atomic # 8 Polarization: -35.98 SS G_CDS: -1.54 Total: -37.52 kcal Atomic # 14 Polarization: 47.40 SS G_CDS: 2.03 Total: 49.43 kcal Total: -75.45 2.57 -72.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001217806175.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.103 kcal (2) G-P(sol) polarization free energy of solvation -75.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds