Wall clock time and date at job start Tue Mar 31 2020 07:16:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50696 * 109.47423 * 2 1 4 4 C 1.50699 * 120.00338 * 86.93586 * 3 2 1 5 5 C 1.33002 * 119.99593 * 266.94076 * 3 2 1 6 6 C 1.47097 * 120.00005 * 7.94727 * 5 3 2 7 7 O 1.21617 * 120.00184 * 6.06968 * 6 5 3 8 8 N 1.34777 * 119.99747 * 186.06197 * 6 5 3 9 9 C 1.44524 * 116.98762 * 3.43047 * 8 6 5 10 10 C 1.51963 * 112.12317 * 203.81033 * 9 8 6 11 11 O 1.41317 * 111.60622 * 320.49808 * 10 9 8 12 12 C 1.40860 * 118.30283 * 56.88580 * 11 10 9 13 13 H 1.08996 * 109.54275 * 187.69759 * 12 11 10 14 14 C 1.53920 * 109.78494 * 67.68317 * 12 11 10 15 15 N 1.46769 * 107.62088 * 222.02262 * 14 12 11 16 16 C 1.36943 * 125.36829 * 178.66819 * 15 14 12 17 17 H 1.07995 * 120.00200 * 173.51830 * 16 15 14 18 18 C 1.38809 * 119.99608 * 353.51675 * 16 15 14 19 19 N 1.31619 * 120.00218 * 213.14664 * 18 16 15 20 20 Si 1.86809 * 119.99993 * 33.14771 * 18 16 15 21 21 H 1.48504 * 109.46848 * 174.01367 * 20 18 16 22 22 H 1.48500 * 109.46768 * 294.01191 * 20 18 16 23 23 H 1.48498 * 109.46984 * 54.01089 * 20 18 16 24 24 C 1.46875 * 109.27150 * 358.40826 * 15 14 12 25 25 C 1.44549 * 117.33742 * 185.04864 * 8 6 5 26 26 H 1.09009 * 109.32237 * 286.13673 * 25 8 6 27 27 H 1.08998 * 109.47089 * 60.00515 * 1 2 3 28 28 H 1.08999 * 109.47439 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47458 * 300.00662 * 1 2 3 30 30 H 1.08997 * 109.47458 * 239.99338 * 2 1 3 31 31 H 1.09006 * 109.46945 * 119.99811 * 2 1 3 32 32 H 1.08999 * 109.46860 * 270.00235 * 4 3 2 33 33 H 1.08996 * 109.46981 * 30.00115 * 4 3 2 34 34 H 1.08998 * 109.46865 * 150.00442 * 4 3 2 35 35 H 1.07996 * 119.99795 * 187.95322 * 5 3 2 36 36 H 1.08999 * 108.28157 * 83.53638 * 9 8 6 37 37 H 1.09008 * 109.44759 * 324.87158 * 9 8 6 38 38 H 1.09000 * 109.05284 * 199.95026 * 10 9 8 39 39 H 1.08997 * 109.05113 * 81.04691 * 10 9 8 40 40 H 1.09005 * 109.95411 * 102.42778 * 14 12 11 41 41 H 1.09001 * 109.70826 * 341.47737 * 14 12 11 42 42 H 0.97004 * 119.99489 * 354.98790 * 19 18 16 43 43 H 1.09002 * 110.06681 * 137.30982 * 24 15 14 44 44 H 1.09002 * 110.06705 * 258.83212 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.2179 2.1545 1.3032 5 6 2.3120 2.0271 -1.1502 6 6 1.9683 1.3797 -2.4256 7 8 1.3309 0.3440 -2.4294 8 7 2.3597 1.9344 -3.5899 9 6 3.1781 3.1228 -3.5078 10 6 3.0825 3.9715 -4.7647 11 8 3.0463 3.1730 -5.9302 12 6 2.0315 2.2028 -6.0438 13 1 2.2158 1.5835 -6.9216 14 6 0.6637 2.8939 -6.1872 15 7 -0.2945 2.1603 -5.3519 16 6 -1.6157 2.4827 -5.1916 17 1 -2.2692 1.8237 -4.6393 18 6 -2.1150 3.6565 -5.7390 19 7 -3.0787 4.3107 -5.1261 20 14 -1.4191 4.3077 -7.3457 21 1 -2.2120 5.4828 -7.7883 22 1 -0.0046 4.7124 -7.1444 23 1 -1.4876 3.2457 -8.3813 24 6 0.3855 1.0222 -4.7197 25 6 1.8967 1.3129 -4.8100 26 1 2.4401 0.3814 -4.9690 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 1.2951 2.6734 1.5624 33 1 2.4670 1.4416 2.0892 34 1 3.0256 2.8790 1.2004 35 1 2.7915 2.9948 -1.1479 36 1 4.2141 2.8153 -3.3655 37 1 2.8651 3.7206 -2.6516 38 1 3.9470 4.6335 -4.8136 39 1 2.1760 4.5749 -4.7185 40 1 0.3415 2.8687 -7.2283 41 1 0.7362 3.9267 -5.8465 42 1 -3.4900 3.9361 -4.3315 43 1 0.0825 0.9382 -3.6760 44 1 0.1490 0.1017 -5.2535 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001217806176.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:16:16 Heat of formation + Delta-G solvation = -1.002744 kcal Electronic energy + Delta-G solvation = -25739.587579 eV Core-core repulsion = 22273.650747 eV Total energy + Delta-G solvation = -3465.936832 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.96333 -38.89823 -36.34933 -35.87857 -34.82259 -32.53060 -30.83429 -30.41788 -28.77141 -28.09753 -27.23101 -24.29518 -23.86901 -23.23692 -21.40699 -20.40142 -19.21306 -18.02395 -17.50193 -17.14059 -16.99029 -16.01105 -15.40636 -15.16382 -14.91024 -14.39101 -14.27672 -14.01130 -13.70759 -13.47499 -13.25349 -12.89342 -12.80232 -12.69599 -12.53749 -12.25550 -12.01983 -11.86537 -11.61909 -11.32370 -11.20601 -10.94859 -10.89278 -10.72062 -10.43021 -10.12710 -9.86041 -9.58694 -9.17683 -9.00683 -8.85795 -8.25348 -8.19387 -7.01492 -6.36777 -3.08870 1.42836 3.08409 3.42963 3.45310 3.53705 3.70883 3.89601 4.54368 4.63128 4.71384 4.75197 4.90282 4.98660 5.06792 5.17010 5.21983 5.28347 5.36785 5.38304 5.46705 5.48951 5.55430 5.66510 5.67454 5.71607 5.75303 5.76374 5.85943 6.02177 6.03682 6.23839 6.35136 6.43781 6.51261 6.58379 6.64329 6.68013 6.79179 7.07766 7.48274 7.60103 7.80072 8.36767 8.45071 9.07829 9.65204 10.30340 11.14566 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.016283 B = 0.006083 C = 0.005185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1719.172687 B = 4602.205020 C = 5399.189187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.104 4.104 3 C -0.030 4.030 4 C -0.125 4.125 5 C -0.233 4.233 6 C 0.542 3.458 7 O -0.522 6.522 8 N -0.586 5.586 9 C 0.079 3.921 10 C 0.054 3.946 11 O -0.370 6.370 12 C 0.086 3.914 13 H 0.118 0.882 14 C 0.090 3.910 15 N -0.605 5.605 16 C -0.335 4.335 17 H 0.078 0.922 18 C -0.016 4.016 19 N -0.909 5.909 20 Si 1.045 2.955 21 H -0.298 1.298 22 H -0.278 1.278 23 H -0.297 1.297 24 C 0.120 3.880 25 C 0.114 3.886 26 H 0.078 0.922 27 H 0.067 0.933 28 H 0.053 0.947 29 H 0.042 0.958 30 H 0.104 0.896 31 H 0.056 0.944 32 H 0.079 0.921 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.126 0.874 36 H 0.064 0.936 37 H 0.086 0.914 38 H 0.106 0.894 39 H 0.060 0.940 40 H 0.032 0.968 41 H 0.052 0.948 42 H 0.263 0.737 43 H 0.083 0.917 44 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.938 -3.406 8.812 18.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.141 4.141 3 C -0.032 4.032 4 C -0.181 4.181 5 C -0.253 4.253 6 C 0.334 3.666 7 O -0.402 6.402 8 N -0.319 5.319 9 C -0.045 4.045 10 C -0.023 4.023 11 O -0.287 6.287 12 C 0.027 3.973 13 H 0.136 0.864 14 C -0.036 4.036 15 N -0.334 5.334 16 C -0.462 4.462 17 H 0.096 0.904 18 C -0.218 4.218 19 N -0.549 5.549 20 Si 0.878 3.122 21 H -0.226 1.226 22 H -0.205 1.205 23 H -0.225 1.225 24 C -0.006 4.006 25 C 0.009 3.991 26 H 0.095 0.905 27 H 0.086 0.914 28 H 0.072 0.928 29 H 0.061 0.939 30 H 0.122 0.878 31 H 0.074 0.926 32 H 0.098 0.902 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.144 0.856 36 H 0.082 0.918 37 H 0.104 0.896 38 H 0.124 0.876 39 H 0.078 0.922 40 H 0.049 0.951 41 H 0.069 0.931 42 H 0.073 0.927 43 H 0.100 0.900 44 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 15.576 -2.627 7.549 17.507 hybrid contribution -0.168 -1.156 1.085 1.595 sum 15.408 -3.783 8.635 18.063 Atomic orbital electron populations 1.21529 0.94052 1.01606 1.01778 1.21033 0.97280 0.92451 1.03322 1.22552 0.90427 0.95871 0.94358 1.20988 1.02659 1.00055 0.94446 1.22503 1.08636 1.02068 0.92122 1.18539 0.79403 0.84534 0.84114 1.90661 1.39119 1.23443 1.86955 1.46468 1.51263 1.28215 1.05926 1.21600 0.94981 0.87678 1.00201 1.22318 1.03222 0.92735 0.84032 1.86884 1.51977 1.49984 1.39819 1.22596 0.88573 0.89124 0.96984 0.86408 1.22464 0.89064 0.97052 0.95009 1.44623 1.06506 1.29669 1.52568 1.19903 0.84045 1.07391 1.34860 0.90406 1.25616 0.99949 0.92615 1.03593 1.70949 1.30491 1.32968 1.20521 0.84238 0.75379 0.75584 0.77024 1.22603 1.20463 1.22503 1.21923 0.87838 0.90590 1.00213 1.21618 0.97567 0.95516 0.84354 0.90458 0.91421 0.92835 0.93898 0.87806 0.92551 0.90214 0.91298 0.91335 0.85599 0.91792 0.89570 0.87562 0.92226 0.95055 0.93092 0.92685 0.89953 0.95485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.86 9.46 37.16 0.35 -1.51 16 2 C -0.10 -1.35 5.32 -27.88 -0.15 -1.49 16 3 C -0.03 -0.37 5.36 -101.17 -0.54 -0.91 16 4 C -0.12 -1.10 10.05 36.00 0.36 -0.74 16 5 C -0.23 -3.13 8.73 -37.81 -0.33 -3.46 16 6 C 0.54 9.12 6.75 -12.67 -0.09 9.04 16 7 O -0.52 -9.86 8.98 5.26 0.05 -9.81 16 8 N -0.59 -9.71 3.09 -170.54 -0.53 -10.23 16 9 C 0.08 1.04 5.88 -5.62 -0.03 1.00 16 10 C 0.05 0.76 6.71 36.63 0.25 1.00 16 11 O -0.37 -6.13 10.23 -34.46 -0.35 -6.48 16 12 C 0.09 1.56 3.87 -26.40 -0.10 1.45 16 13 H 0.12 1.88 8.14 -51.93 -0.42 1.45 16 14 C 0.09 2.03 4.20 -3.42 -0.01 2.01 16 15 N -0.60 -15.47 3.38 -171.43 -0.58 -16.04 16 16 C -0.34 -9.92 10.38 -15.06 -0.16 -10.08 16 17 H 0.08 2.45 8.06 -52.49 -0.42 2.03 16 18 C -0.02 -0.49 5.44 -17.43 -0.09 -0.59 16 19 N -0.91 -28.83 13.70 55.49 0.76 -28.07 16 20 Si 1.05 26.80 24.96 -169.99 -4.24 22.56 16 21 H -0.30 -7.78 7.11 56.52 0.40 -7.38 16 22 H -0.28 -6.55 5.04 56.52 0.28 -6.26 16 23 H -0.30 -7.42 7.11 56.52 0.40 -7.01 16 24 C 0.12 2.67 6.29 -3.23 -0.02 2.65 16 25 C 0.11 2.07 3.36 -68.51 -0.23 1.84 16 26 H 0.08 1.29 8.14 -51.92 -0.42 0.87 16 27 H 0.07 1.18 6.95 -51.93 -0.36 0.82 16 28 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.10 1.57 5.54 -51.93 -0.29 1.28 16 31 H 0.06 0.60 8.07 -51.93 -0.42 0.18 16 32 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.07 0.52 8.06 -51.93 -0.42 0.10 16 34 H 0.07 0.51 8.06 -51.93 -0.42 0.09 16 35 H 0.13 1.39 5.97 -52.49 -0.31 1.07 16 36 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.09 0.99 5.82 -51.92 -0.30 0.69 16 38 H 0.11 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.06 0.97 6.76 -51.93 -0.35 0.62 16 40 H 0.03 0.74 5.05 -51.93 -0.26 0.48 16 41 H 0.05 1.24 4.66 -51.93 -0.24 0.99 16 42 H 0.26 8.29 8.73 -40.82 -0.36 7.93 16 43 H 0.08 1.99 5.08 -51.93 -0.26 1.72 16 44 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 327.32 15.07 4.93 4.93 Total: -1.00 -33.98 327.32 -7.47 -41.45 By element: Atomic # 1 Polarization: 8.19 SS G_CDS: -6.71 Total: 1.48 kcal Atomic # 6 Polarization: 1.03 SS G_CDS: -0.80 Total: 0.23 kcal Atomic # 7 Polarization: -54.00 SS G_CDS: -0.34 Total: -54.35 kcal Atomic # 8 Polarization: -15.99 SS G_CDS: -0.31 Total: -16.29 kcal Atomic # 14 Polarization: 26.80 SS G_CDS: -4.24 Total: 22.56 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -33.98 -7.47 -41.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001217806176.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.444 kcal (2) G-P(sol) polarization free energy of solvation -33.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds