Wall clock time and date at job start Tue Mar 31 2020 07:16:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50696 * 109.47423 * 2 1 4 4 C 1.50699 * 120.00338 * 86.93586 * 3 2 1 5 5 C 1.33002 * 119.99593 * 266.94076 * 3 2 1 6 6 C 1.47097 * 120.00005 * 7.94727 * 5 3 2 7 7 O 1.21617 * 120.00184 * 6.06968 * 6 5 3 8 8 N 1.34777 * 119.99747 * 186.06197 * 6 5 3 9 9 C 1.44524 * 116.98762 * 3.43047 * 8 6 5 10 10 C 1.51963 * 112.12317 * 203.81033 * 9 8 6 11 11 O 1.41317 * 111.60622 * 320.49808 * 10 9 8 12 12 C 1.40860 * 118.30283 * 56.88580 * 11 10 9 13 13 H 1.08996 * 109.54275 * 187.69759 * 12 11 10 14 14 C 1.53920 * 109.78494 * 67.68317 * 12 11 10 15 15 N 1.46769 * 107.62088 * 222.02262 * 14 12 11 16 16 C 1.36943 * 125.36829 * 178.66819 * 15 14 12 17 17 H 1.07995 * 120.00200 * 173.51830 * 16 15 14 18 18 C 1.38809 * 119.99608 * 353.51675 * 16 15 14 19 19 N 1.31619 * 120.00218 * 213.14664 * 18 16 15 20 20 Si 1.86809 * 119.99993 * 33.14771 * 18 16 15 21 21 H 1.48504 * 109.46848 * 174.01367 * 20 18 16 22 22 H 1.48500 * 109.46768 * 294.01191 * 20 18 16 23 23 H 1.48498 * 109.46984 * 54.01089 * 20 18 16 24 24 C 1.46875 * 109.27150 * 358.40826 * 15 14 12 25 25 C 1.44549 * 117.33742 * 185.04864 * 8 6 5 26 26 H 1.09009 * 109.32237 * 286.13673 * 25 8 6 27 27 H 1.08998 * 109.47089 * 60.00515 * 1 2 3 28 28 H 1.08999 * 109.47439 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47458 * 300.00662 * 1 2 3 30 30 H 1.08997 * 109.47458 * 239.99338 * 2 1 3 31 31 H 1.09006 * 109.46945 * 119.99811 * 2 1 3 32 32 H 1.08999 * 109.46860 * 270.00235 * 4 3 2 33 33 H 1.08996 * 109.46981 * 30.00115 * 4 3 2 34 34 H 1.08998 * 109.46865 * 150.00442 * 4 3 2 35 35 H 1.07996 * 119.99795 * 187.95322 * 5 3 2 36 36 H 1.08999 * 108.28157 * 83.53638 * 9 8 6 37 37 H 1.09008 * 109.44759 * 324.87158 * 9 8 6 38 38 H 1.09000 * 109.05284 * 199.95026 * 10 9 8 39 39 H 1.08997 * 109.05113 * 81.04691 * 10 9 8 40 40 H 1.09005 * 109.95411 * 102.42778 * 14 12 11 41 41 H 1.09001 * 109.70826 * 341.47737 * 14 12 11 42 42 H 0.97004 * 119.99489 * 354.98790 * 19 18 16 43 43 H 1.09002 * 110.06681 * 137.30982 * 24 15 14 44 44 H 1.09002 * 110.06705 * 258.83212 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.2179 2.1545 1.3032 5 6 2.3120 2.0271 -1.1502 6 6 1.9683 1.3797 -2.4256 7 8 1.3309 0.3440 -2.4294 8 7 2.3597 1.9344 -3.5899 9 6 3.1781 3.1228 -3.5078 10 6 3.0825 3.9715 -4.7647 11 8 3.0463 3.1730 -5.9302 12 6 2.0315 2.2028 -6.0438 13 1 2.2158 1.5835 -6.9216 14 6 0.6637 2.8939 -6.1872 15 7 -0.2945 2.1603 -5.3519 16 6 -1.6157 2.4827 -5.1916 17 1 -2.2692 1.8237 -4.6393 18 6 -2.1150 3.6565 -5.7390 19 7 -3.0787 4.3107 -5.1261 20 14 -1.4191 4.3077 -7.3457 21 1 -2.2120 5.4828 -7.7883 22 1 -0.0046 4.7124 -7.1444 23 1 -1.4876 3.2457 -8.3813 24 6 0.3855 1.0222 -4.7197 25 6 1.8967 1.3129 -4.8100 26 1 2.4401 0.3814 -4.9690 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 1.2951 2.6734 1.5624 33 1 2.4670 1.4416 2.0892 34 1 3.0256 2.8790 1.2004 35 1 2.7915 2.9948 -1.1479 36 1 4.2141 2.8153 -3.3655 37 1 2.8651 3.7206 -2.6516 38 1 3.9470 4.6335 -4.8136 39 1 2.1760 4.5749 -4.7185 40 1 0.3415 2.8687 -7.2283 41 1 0.7362 3.9267 -5.8465 42 1 -3.4900 3.9361 -4.3315 43 1 0.0825 0.9382 -3.6760 44 1 0.1490 0.1017 -5.2535 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001217806176.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:16:16 Heat of formation + Delta-G solvation = -25.493009 kcal Electronic energy + Delta-G solvation = -25740.649557 eV Core-core repulsion = 22273.650747 eV Total energy + Delta-G solvation = -3466.998810 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.28836 -40.18546 -37.87958 -37.11153 -36.05713 -34.59907 -32.19722 -31.81769 -30.01258 -29.63908 -28.46100 -26.07693 -25.08731 -24.54822 -22.87028 -22.09593 -20.60139 -19.48459 -19.19645 -18.43324 -18.34423 -17.48344 -16.72927 -16.46874 -16.30979 -15.82960 -15.63371 -15.36717 -15.24791 -14.89652 -14.69629 -14.49082 -13.96726 -13.87565 -13.79313 -13.55841 -13.24974 -13.19410 -12.94400 -12.88204 -12.72560 -12.56357 -12.15727 -12.05453 -11.88169 -11.83042 -11.51011 -11.31517 -10.86425 -10.44716 -10.27016 -10.02350 -9.47070 -9.15787 -8.78504 -5.42501 0.38719 1.37180 1.46939 1.67050 1.86377 2.27355 2.47590 2.65440 2.91443 3.28392 3.42590 3.50551 3.67262 3.78736 3.86000 4.00918 4.06350 4.17089 4.19819 4.33627 4.38623 4.46948 4.48832 4.60133 4.64961 4.67995 4.69999 4.80762 4.81758 4.89296 4.94680 4.95082 5.01255 5.07281 5.26135 5.33643 5.48918 5.53838 5.64422 5.67922 6.02131 6.21649 6.39007 6.78042 7.21234 7.43370 8.07264 8.73960 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.016283 B = 0.006083 C = 0.005185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1719.172687 B = 4602.205020 C = 5399.189187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.105 4.105 3 C -0.021 4.021 4 C -0.122 4.122 5 C -0.251 4.251 6 C 0.527 3.473 7 O -0.555 6.555 8 N -0.595 5.595 9 C 0.074 3.926 10 C 0.047 3.953 11 O -0.366 6.366 12 C 0.100 3.900 13 H 0.146 0.854 14 C 0.083 3.917 15 N -0.621 5.621 16 C -0.334 4.334 17 H 0.037 0.963 18 C -0.067 4.067 19 N -0.939 5.939 20 Si 1.089 2.911 21 H -0.304 1.304 22 H -0.242 1.242 23 H -0.284 1.284 24 C 0.118 3.882 25 C 0.125 3.875 26 H 0.096 0.904 27 H 0.023 0.977 28 H 0.055 0.945 29 H 0.060 0.940 30 H 0.079 0.921 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.154 0.846 36 H 0.097 0.903 37 H 0.101 0.899 38 H 0.152 0.848 39 H 0.032 0.968 40 H 0.033 0.967 41 H 0.037 0.963 42 H 0.247 0.753 43 H 0.057 0.943 44 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.678 -2.608 9.164 21.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.142 4.142 3 C -0.023 4.023 4 C -0.178 4.178 5 C -0.271 4.271 6 C 0.321 3.679 7 O -0.437 6.437 8 N -0.328 5.328 9 C -0.049 4.049 10 C -0.030 4.030 11 O -0.283 6.283 12 C 0.041 3.959 13 H 0.164 0.836 14 C -0.042 4.042 15 N -0.350 5.350 16 C -0.462 4.462 17 H 0.055 0.945 18 C -0.263 4.263 19 N -0.581 5.581 20 Si 0.915 3.085 21 H -0.232 1.232 22 H -0.167 1.167 23 H -0.211 1.211 24 C -0.007 4.007 25 C 0.019 3.981 26 H 0.114 0.886 27 H 0.042 0.958 28 H 0.074 0.926 29 H 0.079 0.921 30 H 0.098 0.902 31 H 0.103 0.897 32 H 0.100 0.900 33 H 0.105 0.895 34 H 0.107 0.893 35 H 0.171 0.829 36 H 0.115 0.885 37 H 0.119 0.881 38 H 0.169 0.831 39 H 0.050 0.950 40 H 0.050 0.950 41 H 0.055 0.945 42 H 0.057 0.943 43 H 0.074 0.926 44 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 19.371 -1.837 7.921 21.008 hybrid contribution -1.408 -1.499 1.123 2.343 sum 17.963 -3.336 9.044 20.386 Atomic orbital electron populations 1.21453 0.95282 1.01390 1.00345 1.20991 0.96103 0.93574 1.03505 1.22905 0.88339 0.95307 0.95752 1.21060 1.03505 1.00586 0.92694 1.22609 1.10491 1.03313 0.90728 1.19238 0.78917 0.84385 0.85357 1.90654 1.40508 1.25041 1.87522 1.46652 1.51617 1.29300 1.05181 1.21892 0.96115 0.86531 1.00325 1.22641 1.03918 0.92738 0.83663 1.86912 1.50590 1.49677 1.41113 1.22517 0.86400 0.89198 0.97819 0.83621 1.22600 0.90981 0.96516 0.94059 1.44595 1.05586 1.31006 1.53763 1.19728 0.85912 1.06782 1.33749 0.94454 1.26970 1.00078 0.93314 1.05899 1.71073 1.32180 1.34051 1.20796 0.83710 0.76665 0.75226 0.72893 1.23214 1.16706 1.21145 1.21955 0.90987 0.89517 0.98266 1.21410 0.94298 0.96810 0.85550 0.88590 0.95813 0.92580 0.92110 0.90245 0.89681 0.89974 0.89467 0.89299 0.82875 0.88491 0.88097 0.83060 0.95003 0.94983 0.94535 0.94335 0.92551 0.95892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.66 9.46 71.98 0.68 -2.98 16 2 C -0.10 -2.64 5.32 29.85 0.16 -2.48 16 3 C -0.02 -0.47 5.36 -17.62 -0.09 -0.57 16 4 C -0.12 -1.73 10.05 71.24 0.72 -1.02 16 5 C -0.25 -6.33 8.73 23.43 0.20 -6.12 16 6 C 0.53 17.61 6.75 86.57 0.58 18.20 16 7 O -0.56 -21.80 8.98 -4.08 -0.04 -21.83 16 8 N -0.59 -18.82 3.09 -811.73 -2.51 -21.33 16 9 C 0.07 1.68 5.88 86.41 0.51 2.19 16 10 C 0.05 1.15 6.71 71.64 0.48 1.63 16 11 O -0.37 -10.77 10.23 -146.21 -1.50 -12.27 16 12 C 0.10 3.36 3.87 30.81 0.12 3.47 16 13 H 0.15 4.10 8.14 -2.39 -0.02 4.08 16 14 C 0.08 3.67 4.20 86.64 0.36 4.03 16 15 N -0.62 -32.41 3.38 -696.30 -2.35 -34.76 16 16 C -0.33 -20.67 10.38 84.03 0.87 -19.80 16 17 H 0.04 2.54 8.06 -2.91 -0.02 2.52 16 18 C -0.07 -4.16 5.44 84.86 0.46 -3.69 16 19 N -0.94 -61.87 13.70 21.65 0.30 -61.57 16 20 Si 1.09 54.35 24.96 68.60 1.71 56.06 16 21 H -0.30 -15.38 7.11 99.48 0.71 -14.67 16 22 H -0.24 -10.71 5.04 99.48 0.50 -10.21 16 23 H -0.28 -13.53 7.11 99.48 0.71 -12.82 16 24 C 0.12 5.40 6.29 86.70 0.54 5.94 16 25 C 0.12 4.38 3.36 45.66 0.15 4.53 16 26 H 0.10 3.04 8.14 -2.38 -0.02 3.02 16 27 H 0.02 0.87 6.95 -2.39 -0.02 0.85 16 28 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 29 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.08 2.44 5.54 -2.39 -0.01 2.43 16 31 H 0.08 1.63 8.07 -2.38 -0.02 1.61 16 32 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.09 0.95 8.06 -2.39 -0.02 0.93 16 34 H 0.09 0.94 8.06 -2.39 -0.02 0.92 16 35 H 0.15 2.88 5.97 -2.91 -0.02 2.87 16 36 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 37 H 0.10 1.99 5.82 -2.38 -0.01 1.98 16 38 H 0.15 2.34 8.14 -2.39 -0.02 2.32 16 39 H 0.03 0.96 6.76 -2.39 -0.02 0.95 16 40 H 0.03 1.44 5.05 -2.38 -0.01 1.43 16 41 H 0.04 1.73 4.66 -2.39 -0.01 1.72 16 42 H 0.25 16.52 8.73 -92.71 -0.81 15.71 16 43 H 0.06 2.89 5.08 -2.39 -0.01 2.88 16 44 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 Total: -1.00 -79.18 327.32 2.13 -77.05 By element: Atomic # 1 Polarization: 14.55 SS G_CDS: 0.76 Total: 15.31 kcal Atomic # 6 Polarization: -2.42 SS G_CDS: 5.75 Total: 3.34 kcal Atomic # 7 Polarization: -113.10 SS G_CDS: -4.56 Total: -117.66 kcal Atomic # 8 Polarization: -32.57 SS G_CDS: -1.53 Total: -34.10 kcal Atomic # 14 Polarization: 54.35 SS G_CDS: 1.71 Total: 56.06 kcal Total: -79.18 2.13 -77.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001217806176.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.559 kcal (2) G-P(sol) polarization free energy of solvation -79.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds