Wall clock time and date at job start Tue Mar 31 2020 06:59:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50705 * 120.00546 * 2 1 4 4 C 1.53002 * 109.47112 * 124.67172 * 3 2 1 5 5 C 1.52999 * 109.47050 * 172.62228 * 4 3 2 6 6 C 1.50707 * 109.46726 * 293.41651 * 5 4 3 7 7 C 1.30996 * 120.00139 * 125.00100 * 6 5 4 8 8 C 1.50703 * 109.47051 * 292.61632 * 4 3 2 9 9 O 1.21278 * 120.00119 * 240.00312 * 8 4 3 10 10 N 1.34780 * 119.99857 * 59.99936 * 8 4 3 11 11 C 1.46498 * 120.00071 * 179.97438 * 10 8 4 12 12 H 1.09006 * 110.88479 * 31.12686 * 11 10 8 13 13 C 1.55124 * 111.22823 * 267.21111 * 11 10 8 14 14 N 1.47429 * 104.72402 * 279.17592 * 13 11 10 15 15 C 1.36934 * 125.65238 * 155.81344 * 14 13 11 16 16 H 1.07998 * 119.99868 * 357.07609 * 15 14 13 17 17 C 1.38807 * 120.00329 * 177.06778 * 15 14 13 18 18 N 1.31622 * 119.99862 * 160.90194 * 17 15 14 19 19 Si 1.86800 * 119.99900 * 340.90882 * 17 15 14 20 20 H 1.48496 * 109.47087 * 65.81587 * 19 17 15 21 21 H 1.48499 * 109.47148 * 305.81352 * 19 17 15 22 22 H 1.48499 * 109.47269 * 185.81283 * 19 17 15 23 23 C 1.47021 * 108.69893 * 335.55379 * 14 13 11 24 24 C 1.54319 * 107.27304 * 1.28552 * 23 14 13 25 25 H 1.09003 * 110.72125 * 263.65016 * 24 23 14 26 26 O 1.42905 * 110.72089 * 140.55676 * 24 23 14 27 27 H 1.08003 * 119.99494 * 0.02562 * 1 2 3 28 28 H 1.07994 * 120.00612 * 179.97438 * 1 2 3 29 29 H 1.08006 * 119.99921 * 180.02562 * 2 1 3 30 30 H 1.08992 * 109.46682 * 4.66927 * 3 2 1 31 31 H 1.08997 * 109.47107 * 244.66781 * 3 2 1 32 32 H 1.09003 * 109.47383 * 52.61562 * 4 3 2 33 33 H 1.08993 * 109.47498 * 53.41006 * 5 4 3 34 34 H 1.08998 * 109.46911 * 173.42205 * 5 4 3 35 35 H 1.08000 * 119.99971 * 305.00353 * 6 5 4 36 36 H 1.07993 * 120.00218 * 180.02562 * 7 6 5 37 37 H 1.08004 * 119.99603 * 359.97438 * 7 6 5 38 38 H 0.97004 * 119.99806 * 0.02562 * 10 8 4 39 39 H 1.09000 * 110.49659 * 160.33553 * 13 11 10 40 40 H 1.09006 * 110.34655 * 37.93745 * 13 11 10 41 41 H 0.96997 * 120.00072 * 5.02740 * 18 17 15 42 42 H 1.08998 * 109.88245 * 120.70544 * 23 14 13 43 43 H 1.08998 * 109.88438 * 241.86923 * 23 14 13 44 44 H 0.96701 * 113.99707 * 61.45916 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 3.0293 1.3363 1.1864 5 6 3.9226 2.5742 1.0842 6 6 4.8239 2.4455 -0.1167 7 6 4.8400 3.3868 -1.0275 8 6 2.2443 1.3881 2.4718 9 8 2.3855 2.3230 3.2313 10 7 1.3852 0.3955 2.7772 11 6 0.6226 0.4455 4.0270 12 1 0.4132 1.4762 4.3135 13 6 1.3603 -0.3066 5.1657 14 7 1.0450 -1.7291 4.9408 15 6 1.7991 -2.7905 5.3649 16 1 2.7358 -2.6181 5.8741 17 6 1.3597 -4.0879 5.1406 18 7 2.2119 -5.0897 5.1926 19 14 -0.4412 -4.4121 4.7647 20 1 -0.7919 -3.8007 3.4576 21 1 -1.2847 -3.8167 5.8320 22 1 -0.6786 -5.8768 4.7055 23 6 -0.2165 -1.8195 4.1911 24 6 -0.6880 -0.3769 3.9120 25 1 -1.4141 -0.0571 4.6595 26 8 -1.2382 -0.2702 2.5974 27 1 -0.5399 0.9354 -0.0004 28 1 -0.5401 -0.9352 -0.0004 29 1 1.8500 -0.9354 -0.0004 30 1 1.3583 2.1318 0.0837 31 1 2.6260 1.3998 -0.9288 32 1 3.6485 0.4393 1.1747 33 1 3.3010 3.4632 0.9782 34 1 4.5289 2.6601 1.9860 35 1 5.4566 1.5771 -0.2265 36 1 5.4856 3.2944 -1.8883 37 1 4.2070 4.2550 -0.9180 38 1 1.2725 -0.3524 2.1698 39 1 0.9889 0.0150 6.1387 40 1 2.4353 -0.1406 5.0952 41 1 3.1310 -4.9312 5.4590 42 1 -0.0517 -2.3443 3.2501 43 1 -0.9639 -2.3454 4.7852 44 1 -2.0155 -0.8263 2.4501 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001219686468.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:51 Heat of formation + Delta-G solvation = -15.493887 kcal Electronic energy + Delta-G solvation = -25096.137913 eV Core-core repulsion = 21629.572697 eV Total energy + Delta-G solvation = -3466.565215 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.08743 -38.38202 -36.30844 -35.33969 -34.61400 -33.45291 -31.86165 -31.00557 -28.77585 -27.87446 -26.40147 -24.26134 -23.19276 -21.07217 -20.52635 -19.87825 -19.77693 -19.49471 -17.64298 -17.11719 -16.85762 -16.06395 -15.54618 -15.40195 -14.84747 -14.73757 -14.16467 -13.99546 -13.67949 -13.57730 -13.13447 -13.04155 -12.81664 -12.68737 -12.31854 -12.28940 -11.90571 -11.63473 -11.33426 -11.24170 -11.12024 -10.97351 -10.85374 -10.72599 -10.34007 -9.98604 -9.68693 -9.46462 -9.34307 -9.07382 -9.03161 -8.80632 -8.50294 -7.12449 -6.36503 -3.24552 2.14571 2.38314 2.96747 3.27126 3.39850 3.51372 3.61282 4.26554 4.52985 4.67891 4.75556 4.85835 4.92659 5.02602 5.05322 5.19919 5.23274 5.30466 5.35047 5.41533 5.45603 5.51171 5.67578 5.70106 5.83139 5.85546 5.96695 5.98143 6.03483 6.12175 6.18472 6.38146 6.47323 6.51242 6.52420 6.65807 6.73323 6.84059 6.93742 7.56491 7.74907 7.94390 8.27107 8.59031 8.99083 9.50264 10.15475 11.14126 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.018496 B = 0.004848 C = 0.004648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1513.517456 B = 5774.477691 C = 6022.325114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.190 4.190 3 C -0.078 4.078 4 C -0.100 4.100 5 C -0.075 4.075 6 C -0.146 4.146 7 C -0.199 4.199 8 C 0.518 3.482 9 O -0.557 6.557 10 N -0.690 5.690 11 C 0.140 3.860 12 H 0.097 0.903 13 C 0.125 3.875 14 N -0.606 5.606 15 C -0.323 4.323 16 H 0.080 0.920 17 C -0.025 4.025 18 N -0.926 5.926 19 Si 1.074 2.926 20 H -0.285 1.285 21 H -0.300 1.300 22 H -0.301 1.301 23 C 0.075 3.925 24 C 0.084 3.916 25 H 0.075 0.925 26 O -0.551 6.551 27 H 0.093 0.907 28 H 0.098 0.902 29 H 0.110 0.890 30 H 0.068 0.932 31 H 0.081 0.919 32 H 0.098 0.902 33 H 0.072 0.928 34 H 0.083 0.917 35 H 0.109 0.891 36 H 0.095 0.905 37 H 0.095 0.905 38 H 0.408 0.592 39 H 0.035 0.965 40 H 0.055 0.945 41 H 0.262 0.738 42 H 0.059 0.941 43 H 0.033 0.967 44 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.292 13.205 -12.153 18.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.208 4.208 3 C -0.115 4.115 4 C -0.121 4.121 5 C -0.113 4.113 6 C -0.164 4.164 7 C -0.236 4.236 8 C 0.304 3.696 9 O -0.436 6.436 10 N -0.342 5.342 11 C 0.034 3.966 12 H 0.115 0.885 13 C -0.003 4.003 14 N -0.335 5.335 15 C -0.450 4.450 16 H 0.097 0.903 17 C -0.225 4.225 18 N -0.568 5.568 19 Si 0.908 3.092 20 H -0.212 1.212 21 H -0.229 1.229 22 H -0.229 1.229 23 C -0.051 4.051 24 C 0.024 3.976 25 H 0.093 0.907 26 O -0.356 6.356 27 H 0.111 0.889 28 H 0.116 0.884 29 H 0.128 0.872 30 H 0.087 0.913 31 H 0.099 0.901 32 H 0.116 0.884 33 H 0.091 0.909 34 H 0.101 0.899 35 H 0.127 0.873 36 H 0.113 0.887 37 H 0.113 0.887 38 H 0.246 0.754 39 H 0.052 0.948 40 H 0.073 0.927 41 H 0.072 0.928 42 H 0.076 0.924 43 H 0.050 0.950 44 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -3.722 13.009 -12.045 18.116 hybrid contribution 0.569 0.247 0.534 0.818 sum -3.153 13.256 -11.511 17.838 Atomic orbital electron populations 1.23758 0.95498 1.01846 0.96990 1.22903 0.96428 0.98171 1.03326 1.20689 0.97500 0.96044 0.97265 1.21306 0.96983 1.00857 0.92946 1.20569 0.96479 0.97046 0.97182 1.23002 0.98548 0.99086 0.95768 1.23820 1.02062 0.99028 0.98705 1.20482 0.79693 0.81979 0.87405 1.90650 1.66394 1.34655 1.51853 1.45795 1.41674 1.24620 1.22062 1.22181 0.89410 0.99330 0.85689 0.88462 1.22069 0.98836 0.84918 0.94432 1.44688 1.23054 1.01233 1.64523 1.20145 1.02069 0.84877 1.37959 0.90259 1.25755 1.06016 0.90849 0.99859 1.70911 1.05310 1.33104 1.47477 0.83814 0.75324 0.74047 0.75967 1.21231 1.22886 1.22934 1.22792 0.89934 0.95310 0.97031 1.23159 0.94135 0.95529 0.84775 0.90720 1.86517 1.48974 1.69135 1.30939 0.88852 0.88382 0.87165 0.91326 0.90061 0.88362 0.90894 0.89891 0.87309 0.88669 0.88659 0.75351 0.94768 0.92708 0.92817 0.92381 0.94971 0.77798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.61 12.09 29.02 0.35 -1.26 16 2 C -0.19 -2.18 6.85 -36.02 -0.25 -2.43 16 3 C -0.08 -0.85 5.04 -27.88 -0.14 -0.99 16 4 C -0.10 -1.26 2.24 -91.77 -0.21 -1.47 16 5 C -0.08 -0.89 4.50 -27.88 -0.13 -1.01 16 6 C -0.15 -1.43 8.46 -36.02 -0.30 -1.73 16 7 C -0.20 -1.75 14.32 29.02 0.42 -1.33 16 8 C 0.52 8.48 7.14 -10.98 -0.08 8.40 16 9 O -0.56 -10.67 15.53 5.56 0.09 -10.58 16 10 N -0.69 -11.43 4.36 -51.62 -0.23 -11.65 16 11 C 0.14 2.44 3.31 -65.67 -0.22 2.22 16 12 H 0.10 1.66 7.54 -51.93 -0.39 1.27 16 13 C 0.12 2.55 6.95 -2.41 -0.02 2.54 16 14 N -0.61 -14.38 3.36 -169.94 -0.57 -14.95 16 15 C -0.32 -9.12 10.55 -15.06 -0.16 -9.27 16 16 H 0.08 2.39 8.06 -52.49 -0.42 1.97 16 17 C -0.03 -0.73 5.49 -17.43 -0.10 -0.83 16 18 N -0.93 -28.72 13.70 55.49 0.76 -27.96 16 19 Si 1.07 25.82 24.53 -169.99 -4.17 21.65 16 20 H -0.28 -6.05 5.24 56.52 0.30 -5.75 16 21 H -0.30 -6.96 6.78 56.52 0.38 -6.58 16 22 H -0.30 -7.49 7.11 56.52 0.40 -7.09 16 23 C 0.07 1.51 4.36 -3.07 -0.01 1.50 16 24 C 0.08 1.33 4.12 -24.90 -0.10 1.23 16 25 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 26 O -0.55 -7.23 11.00 -35.23 -0.39 -7.62 16 27 H 0.09 1.04 7.84 -52.48 -0.41 0.63 16 28 H 0.10 1.06 8.06 -52.49 -0.42 0.64 16 29 H 0.11 1.28 8.06 -52.48 -0.42 0.86 16 30 H 0.07 0.78 7.78 -51.93 -0.40 0.38 16 31 H 0.08 0.79 7.23 -51.93 -0.38 0.41 16 32 H 0.10 1.21 8.13 -51.93 -0.42 0.79 16 33 H 0.07 0.88 7.79 -51.93 -0.40 0.47 16 34 H 0.08 1.09 7.90 -51.93 -0.41 0.68 16 35 H 0.11 0.99 8.06 -52.49 -0.42 0.56 16 36 H 0.09 0.71 8.06 -52.49 -0.42 0.29 16 37 H 0.10 0.81 7.84 -52.48 -0.41 0.39 16 38 H 0.41 6.67 5.46 -40.82 -0.22 6.44 16 39 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 41 H 0.26 8.07 8.73 -40.82 -0.36 7.71 16 42 H 0.06 1.24 6.10 -51.93 -0.32 0.92 16 43 H 0.03 0.69 4.34 -51.93 -0.23 0.46 16 44 H 0.38 3.53 9.11 45.56 0.42 3.95 16 LS Contribution 347.53 15.07 5.24 5.24 Total: -1.00 -32.83 347.53 -6.45 -39.28 By element: Atomic # 1 Polarization: 17.30 SS G_CDS: -6.24 Total: 11.06 kcal Atomic # 6 Polarization: -3.52 SS G_CDS: -0.94 Total: -4.46 kcal Atomic # 7 Polarization: -54.53 SS G_CDS: -0.04 Total: -54.56 kcal Atomic # 8 Polarization: -17.91 SS G_CDS: -0.30 Total: -18.21 kcal Atomic # 14 Polarization: 25.82 SS G_CDS: -4.17 Total: 21.65 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -32.83 -6.45 -39.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001219686468.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.784 kcal (2) G-P(sol) polarization free energy of solvation -32.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds