Wall clock time and date at job start Tue Mar 31 2020 06:59:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50705 * 120.00546 * 2 1 4 4 C 1.53002 * 109.47112 * 124.67172 * 3 2 1 5 5 C 1.52999 * 109.47050 * 172.62228 * 4 3 2 6 6 C 1.50707 * 109.46726 * 293.41651 * 5 4 3 7 7 C 1.30996 * 120.00139 * 125.00100 * 6 5 4 8 8 C 1.50703 * 109.47051 * 292.61632 * 4 3 2 9 9 O 1.21278 * 120.00119 * 240.00312 * 8 4 3 10 10 N 1.34780 * 119.99857 * 59.99936 * 8 4 3 11 11 C 1.46498 * 120.00071 * 179.97438 * 10 8 4 12 12 H 1.09006 * 110.88479 * 31.12686 * 11 10 8 13 13 C 1.55124 * 111.22823 * 267.21111 * 11 10 8 14 14 N 1.47429 * 104.72402 * 279.17592 * 13 11 10 15 15 C 1.36934 * 125.65238 * 155.81344 * 14 13 11 16 16 H 1.07998 * 119.99868 * 357.07609 * 15 14 13 17 17 C 1.38807 * 120.00329 * 177.06778 * 15 14 13 18 18 N 1.31622 * 119.99862 * 160.90194 * 17 15 14 19 19 Si 1.86800 * 119.99900 * 340.90882 * 17 15 14 20 20 H 1.48496 * 109.47087 * 65.81587 * 19 17 15 21 21 H 1.48499 * 109.47148 * 305.81352 * 19 17 15 22 22 H 1.48499 * 109.47269 * 185.81283 * 19 17 15 23 23 C 1.47021 * 108.69893 * 335.55379 * 14 13 11 24 24 C 1.54319 * 107.27304 * 1.28552 * 23 14 13 25 25 H 1.09003 * 110.72125 * 263.65016 * 24 23 14 26 26 O 1.42905 * 110.72089 * 140.55676 * 24 23 14 27 27 H 1.08003 * 119.99494 * 0.02562 * 1 2 3 28 28 H 1.07994 * 120.00612 * 179.97438 * 1 2 3 29 29 H 1.08006 * 119.99921 * 180.02562 * 2 1 3 30 30 H 1.08992 * 109.46682 * 4.66927 * 3 2 1 31 31 H 1.08997 * 109.47107 * 244.66781 * 3 2 1 32 32 H 1.09003 * 109.47383 * 52.61562 * 4 3 2 33 33 H 1.08993 * 109.47498 * 53.41006 * 5 4 3 34 34 H 1.08998 * 109.46911 * 173.42205 * 5 4 3 35 35 H 1.08000 * 119.99971 * 305.00353 * 6 5 4 36 36 H 1.07993 * 120.00218 * 180.02562 * 7 6 5 37 37 H 1.08004 * 119.99603 * 359.97438 * 7 6 5 38 38 H 0.97004 * 119.99806 * 0.02562 * 10 8 4 39 39 H 1.09000 * 110.49659 * 160.33553 * 13 11 10 40 40 H 1.09006 * 110.34655 * 37.93745 * 13 11 10 41 41 H 0.96997 * 120.00072 * 5.02740 * 18 17 15 42 42 H 1.08998 * 109.88245 * 120.70544 * 23 14 13 43 43 H 1.08998 * 109.88438 * 241.86923 * 23 14 13 44 44 H 0.96701 * 113.99707 * 61.45916 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 3.0293 1.3363 1.1864 5 6 3.9226 2.5742 1.0842 6 6 4.8239 2.4455 -0.1167 7 6 4.8400 3.3868 -1.0275 8 6 2.2443 1.3881 2.4718 9 8 2.3855 2.3230 3.2313 10 7 1.3852 0.3955 2.7772 11 6 0.6226 0.4455 4.0270 12 1 0.4132 1.4762 4.3135 13 6 1.3603 -0.3066 5.1657 14 7 1.0450 -1.7291 4.9408 15 6 1.7991 -2.7905 5.3649 16 1 2.7358 -2.6181 5.8741 17 6 1.3597 -4.0879 5.1406 18 7 2.2119 -5.0897 5.1926 19 14 -0.4412 -4.4121 4.7647 20 1 -0.7919 -3.8007 3.4576 21 1 -1.2847 -3.8167 5.8320 22 1 -0.6786 -5.8768 4.7055 23 6 -0.2165 -1.8195 4.1911 24 6 -0.6880 -0.3769 3.9120 25 1 -1.4141 -0.0571 4.6595 26 8 -1.2382 -0.2702 2.5974 27 1 -0.5399 0.9354 -0.0004 28 1 -0.5401 -0.9352 -0.0004 29 1 1.8500 -0.9354 -0.0004 30 1 1.3583 2.1318 0.0837 31 1 2.6260 1.3998 -0.9288 32 1 3.6485 0.4393 1.1747 33 1 3.3010 3.4632 0.9782 34 1 4.5289 2.6601 1.9860 35 1 5.4566 1.5771 -0.2265 36 1 5.4856 3.2944 -1.8883 37 1 4.2070 4.2550 -0.9180 38 1 1.2725 -0.3524 2.1698 39 1 0.9889 0.0150 6.1387 40 1 2.4353 -0.1406 5.0952 41 1 3.1310 -4.9312 5.4590 42 1 -0.0517 -2.3443 3.2501 43 1 -0.9639 -2.3454 4.7852 44 1 -2.0155 -0.8263 2.4501 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001219686468.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:50 Heat of formation + Delta-G solvation = -40.146038 kcal Electronic energy + Delta-G solvation = -25097.206910 eV Core-core repulsion = 21629.572697 eV Total energy + Delta-G solvation = -3467.634213 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.39104 -39.76265 -37.35390 -36.72039 -35.68804 -34.84814 -33.72942 -31.95291 -30.40481 -29.43441 -27.27553 -25.98764 -24.45154 -22.73623 -21.80415 -21.07524 -20.73195 -20.49025 -19.66843 -18.32326 -18.12576 -17.48876 -16.90866 -16.50081 -16.05726 -15.84456 -15.56684 -15.44122 -15.08339 -14.85290 -14.64501 -14.36712 -14.01607 -13.91799 -13.64316 -13.43259 -13.19231 -13.14249 -12.88966 -12.53439 -12.26541 -12.05846 -11.94662 -11.89343 -11.71202 -11.58063 -11.30448 -10.96168 -10.82233 -10.53765 -10.29809 -10.03955 -9.89739 -9.13334 -8.66383 -5.46375 1.36731 1.39525 1.49668 1.51823 1.69628 1.72513 2.27887 2.54858 2.96736 3.12214 3.36554 3.66717 3.67921 3.72713 3.76482 4.00992 4.16843 4.18783 4.34714 4.36980 4.42887 4.46791 4.49003 4.52774 4.64598 4.78158 4.79262 4.83923 4.90251 4.98982 5.05516 5.07494 5.18169 5.27973 5.46855 5.57354 5.77708 5.86787 5.92022 5.97561 6.04950 6.62850 6.80152 6.88416 7.29121 7.40066 8.05047 8.85297 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.018496 B = 0.004848 C = 0.004648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1513.517456 B = 5774.477691 C = 6022.325114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.201 4.201 3 C -0.067 4.067 4 C -0.095 4.095 5 C -0.069 4.069 6 C -0.160 4.160 7 C -0.185 4.185 8 C 0.512 3.488 9 O -0.588 6.588 10 N -0.689 5.689 11 C 0.144 3.856 12 H 0.105 0.895 13 C 0.122 3.878 14 N -0.623 5.623 15 C -0.316 4.316 16 H 0.038 0.962 17 C -0.082 4.082 18 N -0.961 5.961 19 Si 1.112 2.888 20 H -0.234 1.234 21 H -0.283 1.283 22 H -0.316 1.316 23 C 0.067 3.933 24 C 0.108 3.892 25 H 0.105 0.895 26 O -0.547 6.547 27 H 0.096 0.904 28 H 0.104 0.896 29 H 0.107 0.893 30 H 0.067 0.933 31 H 0.098 0.902 32 H 0.100 0.900 33 H 0.069 0.931 34 H 0.061 0.939 35 H 0.116 0.884 36 H 0.113 0.887 37 H 0.099 0.901 38 H 0.410 0.590 39 H 0.044 0.956 40 H 0.026 0.974 41 H 0.244 0.756 42 H 0.052 0.948 43 H 0.038 0.962 44 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.795 14.589 -14.361 21.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.219 4.219 3 C -0.104 4.104 4 C -0.116 4.116 5 C -0.107 4.107 6 C -0.178 4.178 7 C -0.221 4.221 8 C 0.300 3.700 9 O -0.470 6.470 10 N -0.340 5.340 11 C 0.037 3.963 12 H 0.123 0.877 13 C -0.005 4.005 14 N -0.352 5.352 15 C -0.444 4.444 16 H 0.056 0.944 17 C -0.274 4.274 18 N -0.606 5.606 19 Si 0.938 3.062 20 H -0.158 1.158 21 H -0.211 1.211 22 H -0.246 1.246 23 C -0.057 4.057 24 C 0.048 3.952 25 H 0.122 0.878 26 O -0.354 6.354 27 H 0.115 0.885 28 H 0.122 0.878 29 H 0.125 0.875 30 H 0.085 0.915 31 H 0.116 0.884 32 H 0.118 0.882 33 H 0.088 0.912 34 H 0.080 0.920 35 H 0.134 0.866 36 H 0.131 0.869 37 H 0.117 0.883 38 H 0.249 0.751 39 H 0.062 0.938 40 H 0.045 0.955 41 H 0.053 0.947 42 H 0.070 0.930 43 H 0.056 0.944 44 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -6.240 14.441 -14.286 21.250 hybrid contribution 1.455 -0.104 1.255 1.924 sum -4.786 14.337 -13.031 19.956 Atomic orbital electron populations 1.23843 0.95338 1.02275 0.96168 1.22952 0.96749 0.98177 1.04027 1.20618 0.97071 0.95828 0.96907 1.21336 0.97063 1.01368 0.91803 1.20477 0.96345 0.96452 0.97423 1.22901 0.99180 1.00237 0.95474 1.24014 1.01340 0.98286 0.98496 1.21163 0.79336 0.81285 0.88206 1.90628 1.67301 1.35889 1.53135 1.45864 1.41694 1.24723 1.21733 1.22079 0.90025 0.99400 0.84809 0.87670 1.22165 0.97788 0.83940 0.96590 1.44640 1.24347 1.01272 1.64899 1.19978 1.01108 0.86737 1.36601 0.94351 1.27225 1.09566 0.90632 0.99995 1.71043 1.04894 1.34279 1.50351 0.83448 0.70426 0.73467 0.78826 1.15849 1.21094 1.24592 1.22998 0.88150 0.98638 0.95952 1.22889 0.93829 0.91724 0.86798 0.87765 1.86496 1.50140 1.69564 1.29173 0.88543 0.87770 0.87505 0.91455 0.88388 0.88206 0.91225 0.92009 0.86634 0.86928 0.88317 0.75095 0.93788 0.95528 0.94660 0.92985 0.94448 0.75214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.70 12.09 67.79 0.82 -1.88 16 2 C -0.20 -4.16 6.85 25.65 0.18 -3.98 16 3 C -0.07 -1.33 5.04 29.85 0.15 -1.18 16 4 C -0.09 -2.32 2.24 -11.54 -0.03 -2.34 16 5 C -0.07 -1.60 4.50 29.85 0.13 -1.46 16 6 C -0.16 -2.89 8.46 25.65 0.22 -2.67 16 7 C -0.18 -2.80 14.32 67.78 0.97 -1.83 16 8 C 0.51 16.47 7.14 87.66 0.63 17.10 16 9 O -0.59 -22.58 15.53 -3.02 -0.05 -22.63 16 10 N -0.69 -21.89 4.36 -435.60 -1.90 -23.79 16 11 C 0.14 4.70 3.31 46.46 0.15 4.86 16 12 H 0.11 3.35 7.54 -2.38 -0.02 3.34 16 13 C 0.12 4.97 6.95 86.93 0.60 5.57 16 14 N -0.62 -29.22 3.36 -691.56 -2.33 -31.55 16 15 C -0.32 -18.29 10.55 84.03 0.89 -17.40 16 16 H 0.04 2.46 8.06 -2.91 -0.02 2.44 16 17 C -0.08 -4.80 5.49 84.86 0.47 -4.34 16 18 N -0.96 -61.62 13.70 21.65 0.30 -61.32 16 19 Si 1.11 50.61 24.53 68.60 1.68 52.30 16 20 H -0.23 -8.77 5.24 99.48 0.52 -8.24 16 21 H -0.28 -12.06 6.78 99.48 0.67 -11.39 16 22 H -0.32 -15.18 7.11 99.48 0.71 -14.47 16 23 C 0.07 2.50 4.36 86.73 0.38 2.88 16 24 C 0.11 2.99 4.12 31.78 0.13 3.12 16 25 H 0.10 2.39 8.14 -2.39 -0.02 2.37 16 26 O -0.55 -11.70 11.00 -148.98 -1.64 -13.34 16 27 H 0.10 1.83 7.84 -2.91 -0.02 1.80 16 28 H 0.10 1.89 8.06 -2.91 -0.02 1.87 16 29 H 0.11 2.29 8.06 -2.91 -0.02 2.27 16 30 H 0.07 1.38 7.78 -2.39 -0.02 1.36 16 31 H 0.10 1.64 7.23 -2.39 -0.02 1.62 16 32 H 0.10 2.42 8.13 -2.39 -0.02 2.40 16 33 H 0.07 1.62 7.79 -2.39 -0.02 1.61 16 34 H 0.06 1.66 7.90 -2.39 -0.02 1.64 16 35 H 0.12 1.93 8.06 -2.91 -0.02 1.90 16 36 H 0.11 1.34 8.06 -2.91 -0.02 1.32 16 37 H 0.10 1.43 7.84 -2.91 -0.02 1.41 16 38 H 0.41 12.66 5.46 -92.71 -0.51 12.15 16 39 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 40 H 0.03 1.21 8.14 -2.38 -0.02 1.19 16 41 H 0.24 15.91 8.73 -92.71 -0.81 15.10 16 42 H 0.05 2.01 6.10 -2.39 -0.01 2.00 16 43 H 0.04 1.42 4.34 -2.39 -0.01 1.41 16 44 H 0.40 5.15 9.11 -74.06 -0.67 4.47 16 Total: -1.00 -73.95 347.53 1.31 -72.64 By element: Atomic # 1 Polarization: 31.70 SS G_CDS: -0.44 Total: 31.25 kcal Atomic # 6 Polarization: -9.25 SS G_CDS: 5.69 Total: -3.57 kcal Atomic # 7 Polarization: -112.72 SS G_CDS: -3.93 Total: -116.65 kcal Atomic # 8 Polarization: -34.28 SS G_CDS: -1.69 Total: -35.97 kcal Atomic # 14 Polarization: 50.61 SS G_CDS: 1.68 Total: 52.30 kcal Total: -73.95 1.31 -72.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001219686468.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.489 kcal (2) G-P(sol) polarization free energy of solvation -73.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds