Wall clock time and date at job start Tue Mar 31 2020 06:59:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 C 1.52998 * 109.47366 * 68.32309 * 3 2 1 5 5 C 1.53001 * 109.47238 * 179.97438 * 4 3 2 6 6 C 1.53002 * 109.46995 * 179.97438 * 5 4 3 7 7 C 1.53001 * 109.46995 * 179.97438 * 6 5 4 8 8 C 1.50703 * 109.46956 * 180.02562 * 7 6 5 9 9 O 1.21285 * 120.00008 * 0.02562 * 8 7 6 10 10 N 1.34776 * 119.99890 * 179.97438 * 8 7 6 11 11 C 1.46495 * 119.99803 * 180.02562 * 10 8 7 12 12 H 1.09000 * 110.78470 * 36.79251 * 11 10 8 13 13 C 1.54325 * 110.72250 * 273.54657 * 11 10 8 14 14 N 1.47018 * 107.40412 * 219.52320 * 13 11 10 15 15 C 1.36936 * 125.64899 * 178.89496 * 14 13 11 16 16 H 1.07997 * 119.99931 * 0.02562 * 15 14 13 17 17 C 1.38819 * 120.00094 * 179.97438 * 15 14 13 18 18 N 1.31618 * 119.99956 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99883 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.47088 * 60.00291 * 19 17 15 21 21 H 1.48494 * 109.47009 * 180.02562 * 19 17 15 22 22 H 1.48492 * 109.47347 * 300.00261 * 19 17 15 23 23 C 1.47426 * 108.70517 * 358.86539 * 14 13 11 24 24 C 1.54914 * 104.82992 * 24.12623 * 23 14 13 25 25 H 1.09001 * 111.00161 * 204.91727 * 24 23 14 26 26 O 1.42894 * 111.00174 * 81.10645 * 24 23 14 27 27 H 4.44652 * 5.63238 * 180.02562 * 4 1 2 28 28 H 1.09002 * 109.47679 * 308.31598 * 3 2 1 29 29 H 1.09000 * 109.46851 * 188.32055 * 3 2 1 30 30 H 1.08998 * 109.47217 * 59.99566 * 4 3 2 31 31 H 1.09004 * 109.46489 * 299.99506 * 4 3 2 32 32 H 1.08998 * 109.47063 * 59.99848 * 5 4 3 33 33 H 1.08993 * 109.46907 * 299.99670 * 5 4 3 34 34 H 1.08998 * 109.46829 * 60.00329 * 6 5 4 35 35 H 1.09000 * 109.47560 * 300.00313 * 6 5 4 36 36 H 1.08998 * 109.47063 * 60.00472 * 7 6 5 37 37 H 1.09000 * 109.47222 * 300.00520 * 7 6 5 38 38 H 0.96997 * 119.99763 * 0.02562 * 10 8 7 39 39 H 1.09002 * 109.88192 * 100.02760 * 13 11 10 40 40 H 1.09000 * 109.88128 * 339.01612 * 13 11 10 41 41 H 0.96998 * 120.00119 * 179.97438 * 18 17 15 42 42 H 1.08999 * 110.36956 * 142.96999 * 23 14 13 43 43 H 1.09001 * 110.36709 * 265.18192 * 23 14 13 44 44 H 0.96704 * 114.00274 * 61.45368 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1563 -0.5319 -1.3405 5 6 4.6863 -0.5306 -1.3407 6 6 5.1965 -1.0638 -2.6809 7 6 6.7265 -1.0619 -2.6814 8 6 7.2291 -1.5865 -4.0017 9 8 6.4411 -1.9278 -4.8582 10 7 8.5542 -1.6754 -4.2312 11 6 9.0427 -2.1849 -5.5149 12 1 8.4014 -1.8539 -6.3317 13 6 9.1430 -3.7246 -5.4889 14 7 10.3709 -4.0976 -6.2062 15 6 10.8330 -5.3738 -6.3874 16 1 10.2800 -6.2103 -5.9864 17 6 12.0116 -5.5924 -7.0874 18 7 12.6853 -4.5730 -7.5765 19 14 12.6415 -7.3335 -7.3352 20 1 11.6296 -8.1246 -8.0805 21 1 13.9088 -7.2960 -8.1083 22 1 12.8871 -7.9639 -6.0133 23 6 11.0221 -2.8700 -6.6987 24 6 10.5137 -1.7475 -5.7599 25 1 10.5562 -0.7765 -6.2533 26 8 11.2515 -1.7299 -4.5363 27 1 -1.0499 0.0001 -0.0002 28 1 3.0097 -0.6363 0.8063 29 1 3.0088 1.0177 0.1487 30 1 2.7926 0.1051 -2.1467 31 1 2.7934 -1.5490 -1.4891 32 1 5.0503 -1.1674 -0.5344 33 1 5.0487 0.4865 -1.1922 34 1 4.8326 -0.4273 -3.4874 35 1 4.8340 -2.0810 -2.8291 36 1 7.0909 -1.6982 -1.8748 37 1 7.0887 -0.0445 -2.5334 38 1 9.1844 -1.4021 -3.5463 39 1 8.2764 -4.1610 -5.9857 40 1 9.1948 -4.0754 -4.4581 41 1 13.5091 -4.7257 -8.0653 42 1 12.1060 -2.9613 -6.6287 43 1 10.7246 -2.6696 -7.7280 44 1 12.1963 -1.5571 -4.6490 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001220149262.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:55 Heat of formation + Delta-G solvation = -27.430323 kcal Electronic energy + Delta-G solvation = -22935.039113 eV Core-core repulsion = 19467.956295 eV Total energy + Delta-G solvation = -3467.082818 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.69028 -37.93206 -36.67459 -34.71488 -34.10812 -33.87293 -31.80316 -31.23203 -28.69301 -27.70340 -26.63819 -24.51609 -23.12033 -21.30554 -20.67793 -20.17716 -19.64670 -18.32923 -17.40229 -16.67219 -16.57811 -16.27026 -15.32613 -15.19125 -14.81841 -14.58253 -14.31350 -13.89251 -13.78909 -13.72768 -13.02096 -12.93484 -12.64890 -12.36876 -12.23231 -11.76077 -11.64774 -11.36102 -11.30241 -11.24365 -11.07045 -10.83930 -10.72309 -10.59501 -10.42191 -10.38916 -10.34652 -10.04989 -9.83473 -9.57324 -9.24232 -8.69899 -8.63389 -6.85270 -5.69840 -3.09474 2.51437 2.54574 2.89331 3.39707 3.42491 3.44108 3.46963 4.04823 4.47254 4.57964 4.66743 4.70614 4.75902 5.00431 5.02227 5.18594 5.32060 5.34366 5.38235 5.39782 5.48415 5.54217 5.58853 5.64234 5.72995 5.76835 5.78980 5.93411 5.94810 6.07803 6.12188 6.24788 6.30561 6.59771 6.72522 6.98032 7.25885 7.32400 7.55502 7.70631 7.88224 8.12395 8.30860 8.54050 9.17922 9.78885 10.42488 11.35349 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.031284 B = 0.002313 C = 0.002219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.819705 B =12104.263927 C =12616.601350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.185 4.185 3 C -0.015 4.015 4 C -0.115 4.115 5 C -0.120 4.120 6 C -0.104 4.104 7 C -0.140 4.140 8 C 0.506 3.494 9 O -0.547 6.547 10 N -0.710 5.710 11 C 0.142 3.858 12 H 0.098 0.902 13 C 0.132 3.868 14 N -0.597 5.597 15 C -0.216 4.216 16 H 0.077 0.923 17 C -0.013 4.013 18 N -0.928 5.928 19 Si 0.917 3.083 20 H -0.285 1.285 21 H -0.290 1.290 22 H -0.285 1.285 23 C 0.126 3.874 24 C 0.067 3.933 25 H 0.058 0.942 26 O -0.563 6.563 27 H 0.216 0.784 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.069 0.931 35 H 0.070 0.930 36 H 0.092 0.908 37 H 0.090 0.910 38 H 0.407 0.593 39 H 0.027 0.973 40 H 0.028 0.972 41 H 0.253 0.747 42 H 0.115 0.885 43 H 0.022 0.978 44 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.919 12.561 13.638 22.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.185 4.185 3 C -0.052 4.052 4 C -0.153 4.153 5 C -0.158 4.158 6 C -0.142 4.142 7 C -0.180 4.180 8 C 0.292 3.708 9 O -0.425 6.425 10 N -0.361 5.361 11 C 0.037 3.963 12 H 0.116 0.884 13 C 0.005 3.995 14 N -0.323 5.323 15 C -0.345 4.345 16 H 0.095 0.905 17 C -0.208 4.208 18 N -0.577 5.577 19 Si 0.748 3.252 20 H -0.212 1.212 21 H -0.216 1.216 22 H -0.212 1.212 23 C 0.000 4.000 24 C 0.007 3.993 25 H 0.076 0.924 26 O -0.369 6.369 27 H 0.232 0.768 28 H 0.105 0.895 29 H 0.104 0.896 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.110 0.890 37 H 0.109 0.891 38 H 0.243 0.757 39 H 0.045 0.955 40 H 0.046 0.954 41 H 0.063 0.937 42 H 0.133 0.867 43 H 0.040 0.960 44 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -13.882 12.066 13.158 22.615 hybrid contribution 0.969 -0.697 -0.155 1.204 sum -12.913 11.369 13.003 21.566 Atomic orbital electron populations 1.24921 0.96028 1.01405 1.01031 1.23250 0.94721 1.00185 1.00306 1.18806 0.84540 1.02641 0.99173 1.21550 0.95640 1.02008 0.96080 1.21626 0.94647 1.01575 0.97902 1.21328 0.93025 1.02776 0.97080 1.21670 0.97761 1.02807 0.95724 1.20741 0.82448 0.78115 0.89469 1.90696 1.55357 1.49512 1.46945 1.45878 1.06728 1.65231 1.18259 1.22139 0.93060 0.95327 0.85784 0.88444 1.21586 0.90350 0.91489 0.96100 1.44289 1.22256 1.02678 1.63090 1.19061 1.04213 0.82525 1.28666 0.90467 1.24762 0.97775 0.97840 1.00427 1.69703 1.17897 1.28040 1.42077 0.86100 0.77971 0.83446 0.77693 1.21199 1.21565 1.21179 1.22620 1.01865 0.82867 0.92606 1.23616 0.90673 0.98453 0.86566 0.92420 1.86209 1.24224 1.95424 1.31028 0.76759 0.89544 0.89584 0.91454 0.91393 0.91619 0.91688 0.91194 0.91077 0.88995 0.89148 0.75743 0.95502 0.95359 0.93677 0.86732 0.95971 0.77206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -1.76 19.25 29.55 0.57 -1.19 16 2 C -0.18 -1.64 13.34 -37.12 -0.50 -2.13 16 3 C -0.02 -0.10 5.70 -29.52 -0.17 -0.27 16 4 C -0.12 -0.86 5.17 -26.73 -0.14 -1.00 16 5 C -0.12 -0.85 5.21 -26.73 -0.14 -0.99 16 6 C -0.10 -1.03 4.50 -26.73 -0.12 -1.15 16 7 C -0.14 -1.41 5.70 -27.88 -0.16 -1.57 16 8 C 0.51 7.62 7.83 -10.98 -0.09 7.54 16 9 O -0.55 -10.41 15.71 5.55 0.09 -10.32 16 10 N -0.71 -10.97 5.09 -51.90 -0.26 -11.23 16 11 C 0.14 2.67 3.13 -65.96 -0.21 2.46 16 12 H 0.10 1.89 7.70 -51.93 -0.40 1.49 16 13 C 0.13 2.98 6.98 -3.07 -0.02 2.96 16 14 N -0.60 -15.48 3.39 -170.07 -0.58 -16.06 16 15 C -0.22 -6.11 10.27 -15.06 -0.15 -6.27 16 16 H 0.08 2.13 7.83 -52.49 -0.41 1.72 16 17 C -0.01 -0.37 5.49 -17.43 -0.10 -0.47 16 18 N -0.93 -26.47 10.09 55.49 0.56 -25.91 16 19 Si 0.92 22.15 29.55 -169.99 -5.02 17.12 16 20 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 21 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 22 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 23 C 0.13 2.95 5.62 -2.53 -0.01 2.94 16 24 C 0.07 1.23 4.29 -24.44 -0.10 1.12 16 25 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 26 O -0.56 -9.47 12.23 -35.23 -0.43 -9.90 16 27 H 0.22 1.03 7.80 -54.10 -0.42 0.61 16 28 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.07 0.76 8.10 -51.93 -0.42 0.34 16 35 H 0.07 0.81 8.10 -51.93 -0.42 0.39 16 36 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.41 5.59 7.58 -40.82 -0.31 5.28 16 39 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.03 0.66 8.03 -51.93 -0.42 0.24 16 41 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 42 H 0.12 2.94 5.87 -51.93 -0.31 2.64 16 43 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 44 H 0.38 5.27 9.11 45.56 0.42 5.68 16 LS Contribution 367.89 15.07 5.54 5.54 Total: -1.00 -33.36 367.89 -7.92 -41.27 By element: Atomic # 1 Polarization: 13.97 SS G_CDS: -6.48 Total: 7.50 kcal Atomic # 6 Polarization: 3.32 SS G_CDS: -1.33 Total: 1.99 kcal Atomic # 7 Polarization: -52.92 SS G_CDS: -0.28 Total: -53.20 kcal Atomic # 8 Polarization: -19.88 SS G_CDS: -0.34 Total: -20.23 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -33.36 -7.92 -41.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001220149262.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.844 kcal (2) G-P(sol) polarization free energy of solvation -33.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds