Wall clock time and date at job start Tue Mar 31 2020 06:59:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 C 1.52998 * 109.47366 * 68.32309 * 3 2 1 5 5 C 1.53001 * 109.47238 * 179.97438 * 4 3 2 6 6 C 1.53002 * 109.46995 * 179.97438 * 5 4 3 7 7 C 1.53001 * 109.46995 * 179.97438 * 6 5 4 8 8 C 1.50703 * 109.46956 * 180.02562 * 7 6 5 9 9 O 1.21285 * 120.00008 * 0.02562 * 8 7 6 10 10 N 1.34776 * 119.99890 * 179.97438 * 8 7 6 11 11 C 1.46495 * 119.99803 * 180.02562 * 10 8 7 12 12 H 1.09000 * 110.78470 * 36.79251 * 11 10 8 13 13 C 1.54325 * 110.72250 * 273.54657 * 11 10 8 14 14 N 1.47018 * 107.40412 * 219.52320 * 13 11 10 15 15 C 1.36936 * 125.64899 * 178.89496 * 14 13 11 16 16 H 1.07997 * 119.99931 * 0.02562 * 15 14 13 17 17 C 1.38819 * 120.00094 * 179.97438 * 15 14 13 18 18 N 1.31618 * 119.99956 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99883 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.47088 * 60.00291 * 19 17 15 21 21 H 1.48494 * 109.47009 * 180.02562 * 19 17 15 22 22 H 1.48492 * 109.47347 * 300.00261 * 19 17 15 23 23 C 1.47426 * 108.70517 * 358.86539 * 14 13 11 24 24 C 1.54914 * 104.82992 * 24.12623 * 23 14 13 25 25 H 1.09001 * 111.00161 * 204.91727 * 24 23 14 26 26 O 1.42894 * 111.00174 * 81.10645 * 24 23 14 27 27 H 4.44652 * 5.63238 * 180.02562 * 4 1 2 28 28 H 1.09002 * 109.47679 * 308.31598 * 3 2 1 29 29 H 1.09000 * 109.46851 * 188.32055 * 3 2 1 30 30 H 1.08998 * 109.47217 * 59.99566 * 4 3 2 31 31 H 1.09004 * 109.46489 * 299.99506 * 4 3 2 32 32 H 1.08998 * 109.47063 * 59.99848 * 5 4 3 33 33 H 1.08993 * 109.46907 * 299.99670 * 5 4 3 34 34 H 1.08998 * 109.46829 * 60.00329 * 6 5 4 35 35 H 1.09000 * 109.47560 * 300.00313 * 6 5 4 36 36 H 1.08998 * 109.47063 * 60.00472 * 7 6 5 37 37 H 1.09000 * 109.47222 * 300.00520 * 7 6 5 38 38 H 0.96997 * 119.99763 * 0.02562 * 10 8 7 39 39 H 1.09002 * 109.88192 * 100.02760 * 13 11 10 40 40 H 1.09000 * 109.88128 * 339.01612 * 13 11 10 41 41 H 0.96998 * 120.00119 * 179.97438 * 18 17 15 42 42 H 1.08999 * 110.36956 * 142.96999 * 23 14 13 43 43 H 1.09001 * 110.36709 * 265.18192 * 23 14 13 44 44 H 0.96704 * 114.00274 * 61.45368 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1563 -0.5319 -1.3405 5 6 4.6863 -0.5306 -1.3407 6 6 5.1965 -1.0638 -2.6809 7 6 6.7265 -1.0619 -2.6814 8 6 7.2291 -1.5865 -4.0017 9 8 6.4411 -1.9278 -4.8582 10 7 8.5542 -1.6754 -4.2312 11 6 9.0427 -2.1849 -5.5149 12 1 8.4014 -1.8539 -6.3317 13 6 9.1430 -3.7246 -5.4889 14 7 10.3709 -4.0976 -6.2062 15 6 10.8330 -5.3738 -6.3874 16 1 10.2800 -6.2103 -5.9864 17 6 12.0116 -5.5924 -7.0874 18 7 12.6853 -4.5730 -7.5765 19 14 12.6415 -7.3335 -7.3352 20 1 11.6296 -8.1246 -8.0805 21 1 13.9088 -7.2960 -8.1083 22 1 12.8871 -7.9639 -6.0133 23 6 11.0221 -2.8700 -6.6987 24 6 10.5137 -1.7475 -5.7599 25 1 10.5562 -0.7765 -6.2533 26 8 11.2515 -1.7299 -4.5363 27 1 -1.0499 0.0001 -0.0002 28 1 3.0097 -0.6363 0.8063 29 1 3.0088 1.0177 0.1487 30 1 2.7926 0.1051 -2.1467 31 1 2.7934 -1.5490 -1.4891 32 1 5.0503 -1.1674 -0.5344 33 1 5.0487 0.4865 -1.1922 34 1 4.8326 -0.4273 -3.4874 35 1 4.8340 -2.0810 -2.8291 36 1 7.0909 -1.6982 -1.8748 37 1 7.0887 -0.0445 -2.5334 38 1 9.1844 -1.4021 -3.5463 39 1 8.2764 -4.1610 -5.9857 40 1 9.1948 -4.0754 -4.4581 41 1 13.5091 -4.7257 -8.0653 42 1 12.1060 -2.9613 -6.6287 43 1 10.7246 -2.6696 -7.7280 44 1 12.1963 -1.5571 -4.6490 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001220149262.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:54 Heat of formation + Delta-G solvation = -50.905803 kcal Electronic energy + Delta-G solvation = -22936.057086 eV Core-core repulsion = 19467.956295 eV Total energy + Delta-G solvation = -3468.100791 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.02238 -39.44185 -37.33547 -36.35550 -35.41381 -34.77989 -33.58964 -32.08242 -30.36231 -29.02340 -27.90868 -26.33817 -24.02770 -22.43593 -21.97087 -21.54571 -21.05588 -19.21375 -18.87629 -18.20654 -17.83421 -17.00140 -16.88581 -16.68952 -16.15584 -15.88726 -15.51275 -15.08284 -14.73183 -14.69153 -14.48931 -14.36270 -14.24101 -13.59660 -13.22202 -13.15905 -12.94717 -12.90945 -12.72639 -12.37683 -12.26808 -12.13977 -12.04014 -11.91175 -11.89364 -11.80695 -11.38554 -11.06725 -10.95077 -10.93133 -10.76353 -10.72009 -10.04618 -8.92062 -7.82004 -5.25463 1.45702 1.48620 1.54996 1.70304 1.89182 1.93371 2.20742 2.48829 3.20411 3.28734 3.52139 3.62820 3.84230 3.89155 3.95488 4.01175 4.07305 4.27747 4.32058 4.34184 4.48381 4.58122 4.71542 4.74084 4.78189 4.84792 4.90135 4.93192 5.00973 5.06310 5.11782 5.25615 5.30701 5.33249 5.44598 5.47418 5.51884 5.57973 5.69596 6.23941 6.67634 6.73082 6.89815 7.07288 7.35400 7.71629 8.34632 9.19821 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.031284 B = 0.002313 C = 0.002219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.819705 B =12104.263927 C =12616.601350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.216 4.216 3 C -0.014 4.014 4 C -0.113 4.113 5 C -0.110 4.110 6 C -0.103 4.103 7 C -0.128 4.128 8 C 0.501 3.499 9 O -0.592 6.592 10 N -0.700 5.700 11 C 0.153 3.847 12 H 0.091 0.909 13 C 0.133 3.867 14 N -0.616 5.616 15 C -0.244 4.244 16 H 0.072 0.928 17 C -0.060 4.060 18 N -0.944 5.944 19 Si 0.982 3.018 20 H -0.283 1.283 21 H -0.287 1.287 22 H -0.277 1.277 23 C 0.125 3.875 24 C 0.092 3.908 25 H 0.093 0.907 26 O -0.562 6.562 27 H 0.239 0.761 28 H 0.098 0.902 29 H 0.101 0.899 30 H 0.057 0.943 31 H 0.053 0.947 32 H 0.079 0.921 33 H 0.084 0.916 34 H 0.054 0.946 35 H 0.047 0.953 36 H 0.114 0.886 37 H 0.124 0.876 38 H 0.419 0.581 39 H 0.005 0.995 40 H 0.022 0.978 41 H 0.250 0.750 42 H 0.093 0.907 43 H -0.001 1.001 44 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.664 13.797 15.600 24.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.216 4.216 3 C -0.050 4.050 4 C -0.151 4.151 5 C -0.147 4.147 6 C -0.141 4.141 7 C -0.168 4.168 8 C 0.290 3.710 9 O -0.473 6.473 10 N -0.353 5.353 11 C 0.046 3.954 12 H 0.109 0.891 13 C 0.006 3.994 14 N -0.342 5.342 15 C -0.373 4.373 16 H 0.090 0.910 17 C -0.253 4.253 18 N -0.594 5.594 19 Si 0.810 3.190 20 H -0.209 1.209 21 H -0.213 1.213 22 H -0.203 1.203 23 C 0.000 4.000 24 C 0.031 3.969 25 H 0.111 0.889 26 O -0.370 6.370 27 H 0.255 0.745 28 H 0.116 0.884 29 H 0.119 0.881 30 H 0.076 0.924 31 H 0.072 0.928 32 H 0.098 0.902 33 H 0.103 0.897 34 H 0.073 0.927 35 H 0.066 0.934 36 H 0.133 0.867 37 H 0.142 0.858 38 H 0.257 0.743 39 H 0.023 0.977 40 H 0.040 0.960 41 H 0.060 0.940 42 H 0.111 0.889 43 H 0.017 0.983 44 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -13.615 13.331 15.162 24.351 hybrid contribution 0.841 -1.107 -0.785 1.596 sum -12.775 12.225 14.377 22.789 Atomic orbital electron populations 1.25703 0.97091 1.00919 1.00415 1.23939 0.95912 1.00776 1.00954 1.18881 0.83559 1.03708 0.98882 1.21496 0.96151 1.01039 0.96367 1.21552 0.93981 1.02807 0.96345 1.21303 0.93129 1.01293 0.98395 1.21729 0.97452 1.04760 0.92846 1.21714 0.81655 0.76914 0.90733 1.90685 1.56338 1.51384 1.48891 1.45777 1.07374 1.64862 1.17248 1.21785 0.93681 0.92462 0.87473 0.89144 1.21629 0.88430 0.94507 0.94862 1.44556 1.23465 1.02835 1.63383 1.19352 1.04803 0.83751 1.29386 0.90990 1.25567 0.97869 1.01671 1.00199 1.69926 1.17819 1.29554 1.42071 0.85108 0.77166 0.79039 0.77715 1.20918 1.21316 1.20344 1.22537 1.00534 0.84081 0.92886 1.23299 0.89789 0.97788 0.86002 0.88918 1.86174 1.25534 1.95374 1.29925 0.74487 0.88371 0.88114 0.92415 0.92772 0.90216 0.89708 0.92739 0.93409 0.86737 0.85834 0.74306 0.97683 0.95987 0.93996 0.88948 0.98294 0.75404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -3.44 19.25 74.32 1.43 -2.00 16 2 C -0.22 -3.64 13.34 31.12 0.42 -3.22 16 3 C -0.01 -0.17 5.70 28.79 0.16 0.00 16 4 C -0.11 -1.55 5.17 30.59 0.16 -1.40 16 5 C -0.11 -1.27 5.21 30.60 0.16 -1.11 16 6 C -0.10 -1.89 4.50 30.60 0.14 -1.76 16 7 C -0.13 -2.22 5.70 29.85 0.17 -2.05 16 8 C 0.50 14.42 7.83 87.66 0.69 15.11 16 9 O -0.59 -22.70 15.71 -3.04 -0.05 -22.75 16 10 N -0.70 -20.39 5.09 -436.51 -2.22 -22.61 16 11 C 0.15 5.64 3.13 46.27 0.14 5.78 16 12 H 0.09 3.50 7.70 -2.39 -0.02 3.48 16 13 C 0.13 6.12 6.98 86.73 0.61 6.72 16 14 N -0.62 -32.67 3.39 -691.98 -2.35 -35.02 16 15 C -0.24 -14.09 10.27 84.04 0.86 -13.23 16 16 H 0.07 4.09 7.83 -2.91 -0.02 4.06 16 17 C -0.06 -3.41 5.49 84.86 0.47 -2.94 16 18 N -0.94 -54.56 10.09 21.65 0.22 -54.34 16 19 Si 0.98 45.77 29.55 68.60 2.03 47.80 16 20 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 21 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 22 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 23 C 0.13 5.93 5.62 86.86 0.49 6.42 16 24 C 0.09 3.20 4.29 32.08 0.14 3.34 16 25 H 0.09 2.68 8.14 -2.39 -0.02 2.67 16 26 O -0.56 -17.57 12.23 -148.98 -1.82 -19.39 16 27 H 0.24 1.98 7.80 -4.42 -0.03 1.94 16 28 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.05 0.88 8.14 -2.38 -0.02 0.86 16 32 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.05 1.16 8.10 -2.39 -0.02 1.14 16 35 H 0.05 1.09 8.10 -2.39 -0.02 1.07 16 36 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.12 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.42 10.24 7.58 -92.71 -0.70 9.54 16 39 H 0.01 0.26 8.14 -2.39 -0.02 0.24 16 40 H 0.02 1.04 8.03 -2.39 -0.02 1.02 16 41 H 0.25 14.00 8.31 -92.71 -0.77 13.23 16 42 H 0.09 4.81 5.87 -2.39 -0.01 4.80 16 43 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 44 H 0.40 9.99 9.11 -74.05 -0.67 9.31 16 Total: -1.00 -74.42 367.89 1.44 -72.97 By element: Atomic # 1 Polarization: 24.06 SS G_CDS: -0.39 Total: 23.67 kcal Atomic # 6 Polarization: 3.64 SS G_CDS: 6.03 Total: 9.67 kcal Atomic # 7 Polarization: -107.62 SS G_CDS: -4.35 Total: -111.97 kcal Atomic # 8 Polarization: -40.27 SS G_CDS: -1.87 Total: -42.14 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 2.03 Total: 47.80 kcal Total: -74.42 1.44 -72.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001220149262.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.067 kcal (2) G-P(sol) polarization free energy of solvation -74.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds