Wall clock time and date at job start Tue Mar 31 2020 06:52:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50704 * 120.00335 * 2 1 4 4 C 1.52998 * 109.47222 * 120.82067 * 3 2 1 5 5 C 1.50697 * 112.84777 * 54.38186 * 4 3 2 6 6 O 1.21277 * 120.00219 * 245.27247 * 5 4 3 7 7 N 1.34778 * 120.00290 * 65.27187 * 5 4 3 8 8 C 1.46497 * 120.00259 * 174.93347 * 7 5 4 9 9 H 1.09000 * 110.88608 * 34.29939 * 8 7 5 10 10 C 1.54909 * 111.00674 * 270.42023 * 8 7 5 11 11 N 1.47467 * 104.81476 * 204.94908 * 10 8 7 12 12 C 1.36928 * 125.62926 * 204.04852 * 11 10 8 13 13 H 1.07994 * 120.00464 * 359.97438 * 12 11 10 14 14 C 1.38817 * 119.99776 * 179.97438 * 12 11 10 15 15 N 1.31618 * 120.00127 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 119.99818 * 179.97438 * 14 12 11 17 17 H 1.48496 * 109.47441 * 359.97438 * 16 14 12 18 18 H 1.48503 * 109.47198 * 120.00140 * 16 14 12 19 19 H 1.48505 * 109.47141 * 239.99877 * 16 14 12 20 20 C 1.47026 * 108.71936 * 24.06825 * 11 10 8 21 21 C 1.54319 * 107.27258 * 358.97729 * 20 11 10 22 22 H 1.09002 * 110.87524 * 219.37279 * 21 20 11 23 23 O 1.42901 * 110.72279 * 96.17343 * 21 20 11 24 24 C 1.53779 * 113.61945 * 283.07363 * 4 3 2 25 25 C 1.53780 * 87.08162 * 220.01962 * 24 4 3 26 26 C 1.53781 * 113.61131 * 185.57238 * 4 3 2 27 27 H 1.07992 * 120.00059 * 359.97438 * 1 2 3 28 28 H 1.08001 * 119.99691 * 179.72773 * 1 2 3 29 29 H 1.08002 * 120.00148 * 180.02562 * 2 1 3 30 30 H 1.08995 * 109.47257 * 240.82790 * 3 2 1 31 31 H 1.09007 * 109.46528 * 0.82421 * 3 2 1 32 32 H 0.96999 * 119.99845 * 354.93117 * 7 5 4 33 33 H 1.09007 * 110.36181 * 323.75535 * 10 8 7 34 34 H 1.08994 * 110.36741 * 86.07195 * 10 8 7 35 35 H 0.97005 * 119.99870 * 180.02562 * 15 14 12 36 36 H 1.08997 * 109.88473 * 239.55726 * 20 11 10 37 37 H 1.09002 * 110.00899 * 118.46483 * 20 11 10 38 38 H 0.96696 * 114.00548 * 66.47675 * 23 21 20 39 39 H 1.09004 * 113.61022 * 334.56390 * 24 4 3 40 40 H 1.09002 * 113.61519 * 105.47018 * 24 4 3 41 41 H 1.08995 * 113.61451 * 270.88440 * 25 24 4 42 42 H 1.09001 * 113.61405 * 139.97669 * 25 24 4 43 43 H 1.09005 * 113.61471 * 254.52794 * 26 4 3 44 44 H 1.08996 * 113.61739 * 25.35527 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 2.9586 1.3772 1.2388 5 6 3.8788 0.1906 1.3656 6 8 3.7509 -0.5795 2.2938 7 7 4.8441 -0.0150 0.4477 8 6 5.8082 -1.1028 0.6295 9 1 5.3403 -1.9599 1.1138 10 6 7.0451 -0.6210 1.4280 11 7 8.1326 -1.5316 1.0245 12 6 9.2526 -1.8119 1.7606 13 1 9.3943 -1.3489 2.7259 14 6 10.2060 -2.6914 1.2661 15 7 10.0331 -3.2562 0.0899 16 14 11.7343 -3.0733 2.2700 17 1 11.6907 -2.3152 3.5461 18 1 11.7852 -4.5289 2.5600 19 1 12.9425 -2.6792 1.5017 20 6 7.8154 -2.0881 -0.2989 21 6 6.4491 -1.5100 -0.7236 22 1 5.8455 -2.2673 -1.2238 23 8 6.6228 -0.3679 -1.5648 24 6 2.1953 1.7082 2.5320 25 6 3.3855 2.6047 2.9121 26 6 3.6709 2.7298 1.4061 27 1 -0.5400 0.9352 0.0004 28 1 -0.5400 -0.9353 -0.0044 29 1 1.8500 -0.9353 -0.0004 30 1 2.6790 1.3693 -0.8973 31 1 1.3553 2.1335 0.0148 32 1 4.9003 0.5574 -0.3334 33 1 7.2923 0.4065 1.1608 34 1 6.8600 -0.7011 2.4991 35 1 10.6992 -3.8710 -0.2555 36 1 7.7558 -3.1749 -0.2394 37 1 8.5807 -1.7978 -1.0187 38 1 7.0200 -0.5684 -2.4233 39 1 1.2699 2.2592 2.3639 40 1 2.0650 0.8517 3.1935 41 1 4.1675 2.0819 3.4627 42 1 3.0924 3.5443 3.3804 43 1 4.7321 2.6980 1.1588 44 1 3.1498 3.5597 0.9290 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001220278872.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:57 Heat of formation + Delta-G solvation = -19.994333 kcal Electronic energy + Delta-G solvation = -24740.252123 eV Core-core repulsion = 21273.491754 eV Total energy + Delta-G solvation = -3466.760369 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.73810 -38.52771 -37.06288 -34.83953 -34.58412 -33.88163 -31.65465 -29.13523 -28.30787 -27.01531 -25.68856 -24.70428 -23.71777 -21.81503 -20.48376 -20.05972 -19.75429 -18.94353 -17.27276 -16.80777 -16.41977 -15.81271 -15.45195 -15.06663 -14.82437 -14.56903 -14.12409 -13.85688 -13.67730 -13.29619 -13.15445 -12.74000 -12.61486 -12.55176 -12.42379 -12.16069 -11.60229 -11.31166 -11.26742 -10.95554 -10.93476 -10.85577 -10.64728 -10.51467 -10.45069 -10.25078 -10.09445 -9.82464 -9.51312 -9.36961 -9.29098 -8.69444 -8.60606 -6.87713 -5.75379 -3.08223 2.17146 2.84570 3.35207 3.39683 3.45566 3.47962 4.32231 4.43425 4.47891 4.54420 4.72720 4.76482 4.89703 5.02446 5.14303 5.29300 5.33694 5.38289 5.51671 5.54559 5.56866 5.66825 5.69539 5.73011 5.82525 5.84882 5.88029 6.05569 6.09598 6.11304 6.23091 6.32460 6.51996 6.62864 6.64603 6.66903 6.95837 7.32926 7.44418 7.72644 7.87444 8.07055 8.19273 8.52346 9.17578 9.77693 10.42215 11.36945 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.024153 B = 0.003899 C = 0.003637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.987842 B = 7178.891603 C = 7696.954585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.146 4.146 3 C -0.073 4.073 4 C -0.102 4.102 5 C 0.538 3.462 6 O -0.540 6.540 7 N -0.705 5.705 8 C 0.138 3.862 9 H 0.103 0.897 10 C 0.132 3.868 11 N -0.600 5.600 12 C -0.224 4.224 13 H 0.080 0.920 14 C -0.009 4.009 15 N -0.926 5.926 16 Si 0.914 3.086 17 H -0.279 1.279 18 H -0.290 1.290 19 H -0.291 1.291 20 C 0.155 3.845 21 C 0.068 3.932 22 H 0.060 0.940 23 O -0.567 6.567 24 C -0.115 4.115 25 C -0.143 4.143 26 C -0.127 4.127 27 H 0.095 0.905 28 H 0.095 0.905 29 H 0.107 0.893 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.406 0.594 33 H 0.026 0.974 34 H 0.043 0.957 35 H 0.252 0.748 36 H 0.055 0.945 37 H 0.053 0.947 38 H 0.379 0.621 39 H 0.084 0.916 40 H 0.082 0.918 41 H 0.083 0.917 42 H 0.069 0.931 43 H 0.075 0.925 44 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.717 10.550 -3.420 20.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.164 4.164 3 C -0.111 4.111 4 C -0.105 4.105 5 C 0.323 3.677 6 O -0.417 6.417 7 N -0.356 5.356 8 C 0.033 3.967 9 H 0.121 0.879 10 C 0.005 3.995 11 N -0.327 5.327 12 C -0.352 4.352 13 H 0.098 0.902 14 C -0.205 4.205 15 N -0.574 5.574 16 Si 0.745 3.255 17 H -0.204 1.204 18 H -0.217 1.217 19 H -0.218 1.218 20 C 0.029 3.971 21 C 0.008 3.992 22 H 0.078 0.922 23 O -0.374 6.374 24 C -0.153 4.153 25 C -0.180 4.180 26 C -0.164 4.164 27 H 0.113 0.887 28 H 0.114 0.886 29 H 0.125 0.875 30 H 0.096 0.904 31 H 0.095 0.905 32 H 0.242 0.758 33 H 0.043 0.957 34 H 0.061 0.939 35 H 0.062 0.938 36 H 0.073 0.927 37 H 0.071 0.929 38 H 0.227 0.773 39 H 0.103 0.897 40 H 0.100 0.900 41 H 0.101 0.899 42 H 0.088 0.912 43 H 0.093 0.907 44 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -16.853 10.164 -2.242 19.808 hybrid contribution 1.211 -0.415 -0.466 1.362 sum -15.642 9.749 -2.707 18.630 Atomic orbital electron populations 1.23762 0.95749 1.01617 1.02075 1.22924 0.96170 0.98412 0.98935 1.20700 0.97825 0.96023 0.96507 1.21969 0.96655 0.94362 0.97500 1.19828 0.80354 0.85534 0.81988 1.90686 1.71454 1.46586 1.32966 1.45705 1.30043 1.34467 1.25387 1.22333 0.88826 0.90176 0.95406 0.87949 1.21833 0.87017 0.93853 0.96826 1.44288 1.20267 1.50501 1.17672 1.19145 0.95095 1.21435 0.99533 0.90225 1.24788 0.98994 0.99473 0.97251 1.69925 1.35637 1.33800 1.18080 0.86001 0.82660 0.77792 0.79082 1.20449 1.21705 1.21754 1.21846 0.89891 0.97290 0.88051 1.23499 0.98589 0.87122 0.89963 0.92213 1.86245 1.85247 1.34742 1.31121 1.22831 0.96867 1.00177 0.95435 1.22847 0.98954 1.00072 0.96129 1.23001 1.01103 0.95111 0.97200 0.88715 0.88638 0.87491 0.90374 0.90461 0.75845 0.95678 0.93918 0.93788 0.92696 0.92910 0.77328 0.89746 0.89957 0.89855 0.91216 0.90676 0.89209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.82 14.32 29.02 0.42 -1.41 16 2 C -0.15 -1.58 8.85 -36.02 -0.32 -1.90 16 3 C -0.07 -0.70 5.12 -27.88 -0.14 -0.84 16 4 C -0.10 -1.17 0.81 -154.85 -0.13 -1.29 16 5 C 0.54 8.32 5.46 -10.99 -0.06 8.26 16 6 O -0.54 -10.46 15.61 5.56 0.09 -10.37 16 7 N -0.71 -10.87 5.17 -51.73 -0.27 -11.13 16 8 C 0.14 2.59 3.29 -65.78 -0.22 2.37 16 9 H 0.10 2.07 7.57 -51.93 -0.39 1.68 16 10 C 0.13 2.92 6.92 -2.51 -0.02 2.91 16 11 N -0.60 -15.55 3.40 -170.04 -0.58 -16.13 16 12 C -0.22 -6.34 10.28 -15.06 -0.15 -6.50 16 13 H 0.08 2.21 7.83 -52.49 -0.41 1.79 16 14 C -0.01 -0.26 5.49 -17.43 -0.10 -0.36 16 15 N -0.93 -26.86 10.31 55.49 0.57 -26.29 16 16 Si 0.91 22.27 29.55 -169.99 -5.02 17.24 16 17 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 18 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 19 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 20 C 0.15 3.64 5.14 -3.06 -0.02 3.62 16 21 C 0.07 1.23 4.20 -24.90 -0.10 1.12 16 22 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 23 O -0.57 -8.96 12.14 -35.23 -0.43 -9.39 16 24 C -0.12 -1.28 7.00 -25.92 -0.18 -1.46 16 25 C -0.14 -1.54 7.81 -25.92 -0.20 -1.74 16 26 C -0.13 -1.27 7.22 -25.92 -0.19 -1.46 16 27 H 0.09 0.74 7.83 -52.49 -0.41 0.33 16 28 H 0.10 0.84 8.06 -52.49 -0.42 0.42 16 29 H 0.11 1.35 7.72 -52.49 -0.41 0.94 16 30 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.08 0.60 7.71 -51.92 -0.40 0.20 16 32 H 0.41 5.60 7.57 -40.82 -0.31 5.29 16 33 H 0.03 0.57 8.14 -51.92 -0.42 0.15 16 34 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 36 H 0.06 1.42 7.38 -51.93 -0.38 1.04 16 37 H 0.05 1.35 7.43 -51.93 -0.39 0.97 16 38 H 0.38 4.63 9.12 45.56 0.42 5.05 16 39 H 0.08 0.75 8.04 -51.93 -0.42 0.33 16 40 H 0.08 1.10 7.35 -51.93 -0.38 0.71 16 41 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 42 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.07 0.83 8.09 -51.93 -0.42 0.41 16 44 H 0.09 0.70 8.10 -51.93 -0.42 0.28 16 LS Contribution 356.39 15.07 5.37 5.37 Total: -1.00 -32.33 356.39 -8.09 -40.42 By element: Atomic # 1 Polarization: 15.36 SS G_CDS: -6.42 Total: 8.95 kcal Atomic # 6 Polarization: 2.73 SS G_CDS: -1.41 Total: 1.33 kcal Atomic # 7 Polarization: -53.28 SS G_CDS: -0.27 Total: -53.55 kcal Atomic # 8 Polarization: -19.42 SS G_CDS: -0.34 Total: -19.76 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -32.33 -8.09 -40.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001220278872.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.431 kcal (2) G-P(sol) polarization free energy of solvation -32.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds