Wall clock time and date at job start Tue Mar 31 2020 06:52:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50704 * 120.00335 * 2 1 4 4 C 1.52998 * 109.47222 * 120.82067 * 3 2 1 5 5 C 1.50697 * 112.84777 * 54.38186 * 4 3 2 6 6 O 1.21277 * 120.00219 * 245.27247 * 5 4 3 7 7 N 1.34778 * 120.00290 * 65.27187 * 5 4 3 8 8 C 1.46497 * 120.00259 * 174.93347 * 7 5 4 9 9 H 1.09000 * 110.88608 * 34.29939 * 8 7 5 10 10 C 1.54909 * 111.00674 * 270.42023 * 8 7 5 11 11 N 1.47467 * 104.81476 * 204.94908 * 10 8 7 12 12 C 1.36928 * 125.62926 * 204.04852 * 11 10 8 13 13 H 1.07994 * 120.00464 * 359.97438 * 12 11 10 14 14 C 1.38817 * 119.99776 * 179.97438 * 12 11 10 15 15 N 1.31618 * 120.00127 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 119.99818 * 179.97438 * 14 12 11 17 17 H 1.48496 * 109.47441 * 359.97438 * 16 14 12 18 18 H 1.48503 * 109.47198 * 120.00140 * 16 14 12 19 19 H 1.48505 * 109.47141 * 239.99877 * 16 14 12 20 20 C 1.47026 * 108.71936 * 24.06825 * 11 10 8 21 21 C 1.54319 * 107.27258 * 358.97729 * 20 11 10 22 22 H 1.09002 * 110.87524 * 219.37279 * 21 20 11 23 23 O 1.42901 * 110.72279 * 96.17343 * 21 20 11 24 24 C 1.53779 * 113.61945 * 283.07363 * 4 3 2 25 25 C 1.53780 * 87.08162 * 220.01962 * 24 4 3 26 26 C 1.53781 * 113.61131 * 185.57238 * 4 3 2 27 27 H 1.07992 * 120.00059 * 359.97438 * 1 2 3 28 28 H 1.08001 * 119.99691 * 179.72773 * 1 2 3 29 29 H 1.08002 * 120.00148 * 180.02562 * 2 1 3 30 30 H 1.08995 * 109.47257 * 240.82790 * 3 2 1 31 31 H 1.09007 * 109.46528 * 0.82421 * 3 2 1 32 32 H 0.96999 * 119.99845 * 354.93117 * 7 5 4 33 33 H 1.09007 * 110.36181 * 323.75535 * 10 8 7 34 34 H 1.08994 * 110.36741 * 86.07195 * 10 8 7 35 35 H 0.97005 * 119.99870 * 180.02562 * 15 14 12 36 36 H 1.08997 * 109.88473 * 239.55726 * 20 11 10 37 37 H 1.09002 * 110.00899 * 118.46483 * 20 11 10 38 38 H 0.96696 * 114.00548 * 66.47675 * 23 21 20 39 39 H 1.09004 * 113.61022 * 334.56390 * 24 4 3 40 40 H 1.09002 * 113.61519 * 105.47018 * 24 4 3 41 41 H 1.08995 * 113.61451 * 270.88440 * 25 24 4 42 42 H 1.09001 * 113.61405 * 139.97669 * 25 24 4 43 43 H 1.09005 * 113.61471 * 254.52794 * 26 4 3 44 44 H 1.08996 * 113.61739 * 25.35527 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 2.9586 1.3772 1.2388 5 6 3.8788 0.1906 1.3656 6 8 3.7509 -0.5795 2.2938 7 7 4.8441 -0.0150 0.4477 8 6 5.8082 -1.1028 0.6295 9 1 5.3403 -1.9599 1.1138 10 6 7.0451 -0.6210 1.4280 11 7 8.1326 -1.5316 1.0245 12 6 9.2526 -1.8119 1.7606 13 1 9.3943 -1.3489 2.7259 14 6 10.2060 -2.6914 1.2661 15 7 10.0331 -3.2562 0.0899 16 14 11.7343 -3.0733 2.2700 17 1 11.6907 -2.3152 3.5461 18 1 11.7852 -4.5289 2.5600 19 1 12.9425 -2.6792 1.5017 20 6 7.8154 -2.0881 -0.2989 21 6 6.4491 -1.5100 -0.7236 22 1 5.8455 -2.2673 -1.2238 23 8 6.6228 -0.3679 -1.5648 24 6 2.1953 1.7082 2.5320 25 6 3.3855 2.6047 2.9121 26 6 3.6709 2.7298 1.4061 27 1 -0.5400 0.9352 0.0004 28 1 -0.5400 -0.9353 -0.0044 29 1 1.8500 -0.9353 -0.0004 30 1 2.6790 1.3693 -0.8973 31 1 1.3553 2.1335 0.0148 32 1 4.9003 0.5574 -0.3334 33 1 7.2923 0.4065 1.1608 34 1 6.8600 -0.7011 2.4991 35 1 10.6992 -3.8710 -0.2555 36 1 7.7558 -3.1749 -0.2394 37 1 8.5807 -1.7978 -1.0187 38 1 7.0200 -0.5684 -2.4233 39 1 1.2699 2.2592 2.3639 40 1 2.0650 0.8517 3.1935 41 1 4.1675 2.0819 3.4627 42 1 3.0924 3.5443 3.3804 43 1 4.7321 2.6980 1.1588 44 1 3.1498 3.5597 0.9290 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001220278872.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:56 Heat of formation + Delta-G solvation = -43.480194 kcal Electronic energy + Delta-G solvation = -24741.270547 eV Core-core repulsion = 21273.491754 eV Total energy + Delta-G solvation = -3467.778793 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.84557 -40.01161 -38.32502 -36.48241 -35.52718 -35.22003 -33.59129 -30.54045 -29.66260 -28.65630 -26.64649 -26.40192 -24.83363 -22.96965 -22.25371 -21.60973 -20.56780 -20.15644 -19.09037 -18.34181 -17.48120 -17.01127 -16.79223 -16.65524 -16.04842 -15.85020 -15.65966 -15.14528 -14.79752 -14.78969 -14.48451 -14.23824 -14.19007 -13.85973 -13.42843 -13.24009 -13.21802 -12.83277 -12.78356 -12.38285 -12.32020 -12.10311 -12.07313 -11.94324 -11.90346 -11.77742 -11.47166 -11.11780 -10.92344 -10.80028 -10.70302 -10.13562 -10.06189 -8.97769 -7.91205 -5.27318 1.41789 1.43904 1.44845 1.55390 1.62514 2.08408 2.46993 3.14841 3.27980 3.46062 3.53351 3.62496 3.74375 3.83974 3.93144 3.94131 4.08593 4.17159 4.23171 4.37307 4.47356 4.55685 4.63303 4.77075 4.78863 4.84175 4.87761 4.99170 5.02059 5.06585 5.10080 5.17915 5.26804 5.33450 5.42846 5.48731 5.50350 5.62250 5.77098 5.91106 6.11679 6.62225 6.85774 7.04073 7.28809 7.67779 8.31651 9.18883 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.024153 B = 0.003899 C = 0.003637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.987842 B = 7178.891603 C = 7696.954585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.171 4.171 3 C -0.066 4.066 4 C -0.101 4.101 5 C 0.534 3.466 6 O -0.586 6.586 7 N -0.694 5.694 8 C 0.151 3.849 9 H 0.085 0.915 10 C 0.134 3.866 11 N -0.621 5.621 12 C -0.249 4.249 13 H 0.076 0.924 14 C -0.059 4.059 15 N -0.947 5.947 16 Si 0.980 3.020 17 H -0.270 1.270 18 H -0.289 1.289 19 H -0.287 1.287 20 C 0.161 3.839 21 C 0.094 3.906 22 H 0.089 0.911 23 O -0.562 6.562 24 C -0.113 4.113 25 C -0.148 4.148 26 C -0.114 4.114 27 H 0.119 0.881 28 H 0.095 0.905 29 H 0.078 0.922 30 H 0.087 0.913 31 H 0.108 0.892 32 H 0.418 0.582 33 H 0.026 0.974 34 H 0.024 0.976 35 H 0.250 0.750 36 H 0.023 0.977 37 H 0.028 0.972 38 H 0.398 0.602 39 H 0.117 0.883 40 H 0.051 0.949 41 H 0.049 0.951 42 H 0.094 0.906 43 H 0.062 0.938 44 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.392 12.794 -4.475 22.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.190 4.190 3 C -0.103 4.103 4 C -0.104 4.104 5 C 0.322 3.678 6 O -0.465 6.465 7 N -0.345 5.345 8 C 0.044 3.956 9 H 0.103 0.897 10 C 0.008 3.992 11 N -0.348 5.348 12 C -0.377 4.377 13 H 0.094 0.906 14 C -0.252 4.252 15 N -0.596 5.596 16 Si 0.808 3.192 17 H -0.195 1.195 18 H -0.216 1.216 19 H -0.214 1.214 20 C 0.035 3.965 21 C 0.033 3.967 22 H 0.107 0.893 23 O -0.371 6.371 24 C -0.150 4.150 25 C -0.185 4.185 26 C -0.152 4.152 27 H 0.137 0.863 28 H 0.113 0.887 29 H 0.096 0.904 30 H 0.105 0.895 31 H 0.127 0.873 32 H 0.255 0.745 33 H 0.044 0.956 34 H 0.042 0.958 35 H 0.059 0.941 36 H 0.042 0.958 37 H 0.046 0.954 38 H 0.249 0.751 39 H 0.136 0.864 40 H 0.069 0.931 41 H 0.068 0.932 42 H 0.112 0.888 43 H 0.081 0.919 44 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -18.546 12.444 -3.333 22.581 hybrid contribution 1.699 -1.120 -0.111 2.038 sum -16.847 11.324 -3.445 20.589 Atomic orbital electron populations 1.23972 0.95271 1.02799 0.99772 1.22897 0.96820 0.98105 1.01133 1.20734 0.97908 0.96215 0.95430 1.21966 0.96389 0.92994 0.99075 1.20675 0.80217 0.86129 0.80745 1.90666 1.72623 1.48520 1.34726 1.45554 1.29287 1.33694 1.25998 1.21888 0.88106 0.90506 0.95126 0.89694 1.21855 0.87760 0.93307 0.96318 1.44566 1.20556 1.51126 1.18570 1.19454 0.96409 1.21926 0.99961 0.90614 1.25609 1.01800 0.99365 0.98440 1.70119 1.36294 1.33957 1.19224 0.84991 0.78871 0.77366 0.77961 1.19489 1.21586 1.21371 1.21705 0.92396 0.95720 0.86674 1.23093 0.95322 0.88107 0.90137 0.89331 1.86206 1.85298 1.33532 1.32072 1.22896 0.98241 0.99397 0.94477 1.22834 0.98022 1.00754 0.96892 1.23056 1.00691 0.95030 0.96387 0.86306 0.88689 0.90402 0.89483 0.87340 0.74456 0.95606 0.95779 0.94085 0.95844 0.95361 0.75067 0.86436 0.93056 0.93201 0.88778 0.91897 0.85444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.91 14.32 67.78 0.97 -1.94 16 2 C -0.17 -3.40 8.85 25.65 0.23 -3.17 16 3 C -0.07 -1.03 5.12 29.85 0.15 -0.88 16 4 C -0.10 -2.12 0.81 -52.40 -0.04 -2.17 16 5 C 0.53 16.57 5.46 87.66 0.48 17.05 16 6 O -0.59 -23.65 15.61 -3.02 -0.05 -23.70 16 7 N -0.69 -21.09 5.17 -435.97 -2.26 -23.34 16 8 C 0.15 5.73 3.29 46.38 0.15 5.89 16 9 H 0.09 3.57 7.57 -2.39 -0.02 3.55 16 10 C 0.13 6.16 6.92 86.85 0.60 6.76 16 11 N -0.62 -33.31 3.40 -691.89 -2.35 -35.66 16 12 C -0.25 -14.53 10.28 84.04 0.86 -13.66 16 13 H 0.08 4.34 7.83 -2.91 -0.02 4.31 16 14 C -0.06 -3.39 5.49 84.86 0.47 -2.92 16 15 N -0.95 -56.31 10.31 21.65 0.22 -56.08 16 16 Si 0.98 46.46 29.55 68.60 2.03 48.49 16 17 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 18 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 19 H -0.29 -13.38 7.11 99.48 0.71 -12.68 16 20 C 0.16 7.76 5.14 86.73 0.45 8.21 16 21 C 0.09 3.33 4.20 31.78 0.13 3.46 16 22 H 0.09 2.72 8.14 -2.39 -0.02 2.70 16 23 O -0.56 -16.69 12.14 -148.98 -1.81 -18.50 16 24 C -0.11 -2.28 7.00 31.12 0.22 -2.06 16 25 C -0.15 -2.95 7.81 31.12 0.24 -2.71 16 26 C -0.11 -1.95 7.22 31.12 0.22 -1.73 16 27 H 0.12 1.34 7.83 -2.91 -0.02 1.32 16 28 H 0.09 1.50 8.06 -2.91 -0.02 1.47 16 29 H 0.08 1.98 7.72 -2.91 -0.02 1.95 16 30 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.11 1.08 7.71 -2.38 -0.02 1.06 16 32 H 0.42 10.78 7.57 -92.71 -0.70 10.08 16 33 H 0.03 1.19 8.14 -2.38 -0.02 1.17 16 34 H 0.02 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.25 14.33 8.31 -92.70 -0.77 13.56 16 36 H 0.02 1.27 7.38 -2.39 -0.02 1.25 16 37 H 0.03 1.49 7.43 -2.39 -0.02 1.47 16 38 H 0.40 8.81 9.12 -74.06 -0.68 8.13 16 39 H 0.12 1.61 8.04 -2.38 -0.02 1.59 16 40 H 0.05 1.37 7.35 -2.39 -0.02 1.36 16 41 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 42 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 43 H 0.06 1.25 8.09 -2.38 -0.02 1.24 16 44 H 0.13 1.29 8.10 -2.39 -0.02 1.27 16 Total: -1.00 -73.83 356.39 0.54 -73.29 By element: Atomic # 1 Polarization: 25.76 SS G_CDS: -0.38 Total: 25.37 kcal Atomic # 6 Polarization: 4.99 SS G_CDS: 5.13 Total: 10.13 kcal Atomic # 7 Polarization: -110.70 SS G_CDS: -4.38 Total: -115.08 kcal Atomic # 8 Polarization: -40.35 SS G_CDS: -1.86 Total: -42.20 kcal Atomic # 14 Polarization: 46.46 SS G_CDS: 2.03 Total: 48.49 kcal Total: -73.83 0.54 -73.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001220278872.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.809 kcal (2) G-P(sol) polarization free energy of solvation -73.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds