Wall clock time and date at job start Tue Mar 31 2020 06:56:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50699 * 120.00318 * 2 1 4 4 C 1.52997 * 109.47350 * 124.99906 * 3 2 1 5 5 C 1.52992 * 109.47269 * 177.08059 * 4 3 2 6 6 C 1.50696 * 115.55516 * 294.75593 * 5 4 3 7 7 O 1.21278 * 120.00565 * 114.42616 * 6 5 4 8 8 N 1.34782 * 119.99937 * 294.43455 * 6 5 4 9 9 C 1.46500 * 120.00226 * 174.93152 * 8 6 5 10 10 H 1.09000 * 110.88442 * 34.29859 * 9 8 6 11 11 C 1.54905 * 111.00644 * 270.41565 * 9 8 6 12 12 N 1.47464 * 104.81503 * 204.94789 * 11 9 8 13 13 C 1.36934 * 125.63227 * 204.14188 * 12 11 9 14 14 H 1.07999 * 119.99629 * 6.94874 * 13 12 11 15 15 C 1.38817 * 120.00014 * 186.94896 * 13 12 11 16 16 N 1.31611 * 120.00081 * 7.39526 * 15 13 12 17 17 Si 1.86792 * 119.99700 * 187.39802 * 15 13 12 18 18 H 1.48496 * 109.47496 * 94.96488 * 17 15 13 19 19 H 1.48502 * 109.47246 * 214.96549 * 17 15 13 20 20 H 1.48503 * 109.47525 * 334.96327 * 17 15 13 21 21 C 1.47030 * 108.71813 * 24.07137 * 12 11 9 22 22 C 1.54324 * 107.27227 * 358.97481 * 21 12 11 23 23 H 1.09001 * 110.71572 * 219.44806 * 22 21 12 24 24 O 1.42898 * 110.72065 * 96.17294 * 22 21 12 25 25 C 1.53008 * 117.50099 * 149.08268 * 5 4 3 26 26 C 1.53003 * 117.49798 * 80.42365 * 5 4 3 27 27 H 1.07994 * 119.99529 * 0.02562 * 1 2 3 28 28 H 1.07996 * 119.99727 * 179.72476 * 1 2 3 29 29 H 1.08007 * 119.99993 * 180.02562 * 2 1 3 30 30 H 1.09007 * 109.47211 * 245.00050 * 3 2 1 31 31 H 1.09000 * 109.47263 * 4.99600 * 3 2 1 32 32 H 1.08994 * 109.47179 * 297.08718 * 4 3 2 33 33 H 1.09005 * 109.46806 * 57.08063 * 4 3 2 34 34 H 0.96999 * 119.99880 * 354.92856 * 8 6 5 35 35 H 1.09001 * 110.36536 * 323.75982 * 11 9 8 36 36 H 1.09003 * 110.36680 * 86.07628 * 11 9 8 37 37 H 0.96998 * 120.00082 * 180.02562 * 16 15 13 38 38 H 1.09003 * 109.87946 * 239.55426 * 21 12 11 39 39 H 1.08995 * 109.87806 * 118.39578 * 21 12 11 40 40 H 0.96700 * 113.99964 * 66.47213 * 24 22 21 41 41 H 1.09004 * 117.49389 * 0.02562 * 25 5 4 42 42 H 1.08998 * 117.50188 * 145.02189 * 25 5 4 43 43 H 1.09004 * 117.50217 * 214.98014 * 26 5 4 44 44 H 1.09001 * 117.50014 * 0.02562 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 3.0351 1.3330 1.1816 5 6 3.8517 2.6262 1.1400 6 6 4.7781 2.7723 -0.0396 7 8 4.5818 3.6429 -0.8608 8 7 5.8248 1.9353 -0.1821 9 6 6.6599 2.0047 -1.3838 10 1 6.7447 3.0316 -1.7393 11 6 6.1116 1.0758 -2.4955 12 7 7.2818 0.7623 -3.3363 13 6 7.2407 0.3831 -4.6514 14 1 6.3044 0.4005 -5.1893 15 6 8.4025 -0.0237 -5.2931 16 7 9.5126 -0.1849 -4.6048 17 14 8.3901 -0.3424 -7.1336 18 1 8.8425 0.8771 -7.8502 19 1 9.3055 -1.4689 -7.4472 20 1 7.0126 -0.6887 -7.5669 21 6 8.5000 0.9261 -2.5293 22 6 8.0601 1.3886 -1.1243 23 1 8.7459 2.1404 -0.7336 24 8 7.9656 0.2762 -0.2324 25 6 4.3101 3.2156 2.4755 26 6 3.1920 3.8960 1.6816 27 1 -0.5399 0.9353 -0.0004 28 1 -0.5399 -0.9353 -0.0045 29 1 1.8500 -0.9354 -0.0004 30 1 2.6214 1.4025 -0.9314 31 1 1.3587 2.1316 0.0895 32 1 2.4737 1.2877 2.1147 33 1 3.7070 0.4769 1.1199 34 1 6.0252 1.2869 0.5110 35 1 5.7023 0.1640 -2.0604 36 1 5.3508 1.5925 -3.0806 37 1 10.3244 -0.4688 -5.0532 38 1 9.1461 1.6783 -2.9819 39 1 9.0280 -0.0248 -2.4583 40 1 8.8140 -0.1449 -0.0376 41 1 4.0302 2.6818 3.3837 42 1 5.2815 3.7093 2.5008 43 1 3.4283 4.8371 1.1850 44 1 2.1764 3.8100 2.0680 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001220280519.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:54 Heat of formation + Delta-G solvation = -20.408689 kcal Electronic energy + Delta-G solvation = -24353.158205 eV Core-core repulsion = 20886.379867 eV Total energy + Delta-G solvation = -3466.778337 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.16845 -38.31009 -36.84288 -35.05494 -34.82220 -33.89303 -31.64032 -30.25641 -28.53377 -27.18388 -24.97656 -24.16550 -22.80664 -22.43990 -20.50786 -20.05990 -19.81444 -19.23923 -17.34990 -16.83987 -16.65012 -15.64522 -15.40375 -15.19001 -14.81738 -14.45073 -14.12544 -14.06364 -13.69250 -13.28343 -13.09860 -12.80807 -12.65565 -12.37828 -12.24324 -12.14339 -11.68093 -11.38361 -11.29948 -11.14864 -10.91694 -10.86592 -10.56869 -10.52246 -10.45200 -10.17107 -10.06451 -9.81132 -9.55246 -9.37216 -9.30972 -8.70824 -8.59886 -6.86058 -5.74273 -3.09394 2.19556 2.76153 3.30214 3.40182 3.45712 3.47500 3.61205 4.41845 4.47778 4.55010 4.64861 4.74570 4.90920 4.97972 5.09858 5.28343 5.32879 5.36657 5.43221 5.46446 5.51149 5.55615 5.71530 5.73895 5.77261 5.82725 5.86668 5.98632 5.99346 6.08600 6.12924 6.21726 6.55122 6.62936 6.66450 6.69371 6.95663 7.22712 7.51530 7.71958 7.86573 8.07136 8.21110 8.50726 9.16878 9.77928 10.42768 11.36498 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.016739 B = 0.004092 C = 0.003615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1672.359582 B = 6841.362130 C = 7742.660313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.146 4.146 3 C -0.095 4.095 4 C -0.069 4.069 5 C -0.155 4.155 6 C 0.547 3.453 7 O -0.541 6.541 8 N -0.702 5.702 9 C 0.138 3.862 10 H 0.102 0.898 11 C 0.132 3.868 12 N -0.598 5.598 13 C -0.225 4.225 14 H 0.079 0.921 15 C -0.008 4.008 16 N -0.924 5.924 17 Si 0.913 3.087 18 H -0.289 1.289 19 H -0.291 1.291 20 H -0.280 1.280 21 C 0.148 3.852 22 C 0.070 3.930 23 H 0.059 0.941 24 O -0.566 6.566 25 C -0.160 4.160 26 C -0.145 4.145 27 H 0.094 0.906 28 H 0.095 0.905 29 H 0.109 0.891 30 H 0.076 0.924 31 H 0.068 0.932 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.407 0.593 35 H 0.026 0.974 36 H 0.042 0.958 37 H 0.252 0.748 38 H 0.038 0.962 39 H 0.071 0.929 40 H 0.380 0.620 41 H 0.102 0.898 42 H 0.097 0.903 43 H 0.102 0.898 44 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.122 3.138 16.439 19.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.164 4.164 3 C -0.132 4.132 4 C -0.106 4.106 5 C -0.159 4.159 6 C 0.332 3.668 7 O -0.418 6.418 8 N -0.353 5.353 9 C 0.032 3.968 10 H 0.120 0.880 11 C 0.005 3.995 12 N -0.325 5.325 13 C -0.353 4.353 14 H 0.097 0.903 15 C -0.204 4.204 16 N -0.572 5.572 17 Si 0.744 3.256 18 H -0.216 1.216 19 H -0.217 1.217 20 H -0.206 1.206 21 C 0.023 3.977 22 C 0.010 3.990 23 H 0.077 0.923 24 O -0.372 6.372 25 C -0.198 4.198 26 C -0.183 4.183 27 H 0.113 0.887 28 H 0.113 0.887 29 H 0.127 0.873 30 H 0.095 0.905 31 H 0.087 0.913 32 H 0.091 0.909 33 H 0.093 0.907 34 H 0.243 0.757 35 H 0.044 0.956 36 H 0.061 0.939 37 H 0.062 0.938 38 H 0.057 0.943 39 H 0.089 0.911 40 H 0.227 0.773 41 H 0.121 0.879 42 H 0.116 0.884 43 H 0.121 0.879 44 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -10.744 3.822 15.635 19.352 hybrid contribution 0.853 -0.721 -0.760 1.351 sum -9.891 3.101 14.875 18.131 Atomic orbital electron populations 1.23813 0.95952 1.01619 1.02421 1.23012 0.96029 0.98620 0.98762 1.20741 0.98153 0.95229 0.99082 1.21008 0.96672 0.94166 0.98797 1.21512 1.02090 0.97507 0.94757 1.19476 0.80641 0.81046 0.85620 1.90697 1.72785 1.34305 1.44057 1.45704 1.29295 1.37878 1.22405 1.22340 0.88696 1.00343 0.85435 0.87968 1.21829 0.91392 0.95253 0.91074 1.44279 0.99815 1.80171 1.08261 1.19100 0.94979 1.36918 0.84349 0.90322 1.24790 0.95949 1.01241 0.98449 1.69904 1.00398 1.52979 1.33869 0.86069 0.77301 0.77452 0.84800 1.21604 1.21744 1.20551 1.21918 0.89546 1.00768 0.85511 1.23425 0.95570 0.87583 0.92410 0.92264 1.86250 1.36268 1.47806 1.66889 1.23095 0.99911 1.03218 0.93535 1.22978 0.97721 0.95785 1.01799 0.88742 0.88683 0.87281 0.90528 0.91285 0.90928 0.90738 0.75701 0.95625 0.93933 0.93767 0.94346 0.91098 0.77258 0.87927 0.88427 0.87909 0.88100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.92 14.32 29.01 0.42 -1.51 16 2 C -0.15 -1.55 9.52 -36.03 -0.34 -1.89 16 3 C -0.09 -1.09 5.56 -27.88 -0.16 -1.24 16 4 C -0.07 -0.70 5.07 -26.74 -0.14 -0.83 16 5 C -0.16 -1.79 1.90 -155.66 -0.30 -2.08 16 6 C 0.55 8.54 6.41 -10.99 -0.07 8.47 16 7 O -0.54 -10.57 16.36 5.56 0.09 -10.48 16 8 N -0.70 -10.90 5.17 -51.73 -0.27 -11.17 16 9 C 0.14 2.58 3.29 -65.78 -0.22 2.36 16 10 H 0.10 2.05 7.57 -51.93 -0.39 1.66 16 11 C 0.13 2.93 6.92 -2.51 -0.02 2.91 16 12 N -0.60 -15.51 3.40 -170.04 -0.58 -16.08 16 13 C -0.23 -6.38 10.26 -15.06 -0.15 -6.54 16 14 H 0.08 2.18 7.84 -52.49 -0.41 1.77 16 15 C -0.01 -0.23 5.45 -17.43 -0.09 -0.33 16 16 N -0.92 -26.77 10.49 55.49 0.58 -26.19 16 17 Si 0.91 22.28 29.56 -169.99 -5.02 17.25 16 18 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 19 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 20 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 21 C 0.15 3.47 5.20 -3.06 -0.02 3.46 16 22 C 0.07 1.26 4.20 -24.90 -0.10 1.16 16 23 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 24 O -0.57 -9.01 12.13 -35.23 -0.43 -9.44 16 25 C -0.16 -1.46 9.93 -26.69 -0.26 -1.73 16 26 C -0.15 -1.47 9.78 -26.69 -0.26 -1.74 16 27 H 0.09 0.84 7.84 -52.49 -0.41 0.43 16 28 H 0.09 0.80 8.06 -52.49 -0.42 0.37 16 29 H 0.11 1.12 8.06 -52.48 -0.42 0.70 16 30 H 0.08 1.08 7.63 -51.92 -0.40 0.69 16 31 H 0.07 0.76 7.79 -51.93 -0.40 0.35 16 32 H 0.07 0.61 8.09 -51.93 -0.42 0.19 16 33 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.41 5.68 7.57 -40.82 -0.31 5.37 16 35 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 38 H 0.04 0.98 7.94 -51.93 -0.41 0.57 16 39 H 0.07 1.83 6.89 -51.93 -0.36 1.47 16 40 H 0.38 4.70 9.12 45.56 0.42 5.11 16 41 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.10 1.18 8.00 -51.93 -0.42 0.77 16 44 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 363.94 15.07 5.48 5.48 Total: -1.00 -32.49 363.94 -8.31 -40.80 By element: Atomic # 1 Polarization: 15.82 SS G_CDS: -6.46 Total: 9.36 kcal Atomic # 6 Polarization: 2.18 SS G_CDS: -1.71 Total: 0.46 kcal Atomic # 7 Polarization: -53.18 SS G_CDS: -0.26 Total: -53.44 kcal Atomic # 8 Polarization: -19.58 SS G_CDS: -0.34 Total: -19.92 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -32.49 -8.31 -40.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001220280519.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.392 kcal (2) G-P(sol) polarization free energy of solvation -32.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds