Wall clock time and date at job start Tue Mar 31 2020 06:56:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50699 * 120.00318 * 2 1 4 4 C 1.52997 * 109.47350 * 124.99906 * 3 2 1 5 5 C 1.52992 * 109.47269 * 177.08059 * 4 3 2 6 6 C 1.50696 * 115.55516 * 294.75593 * 5 4 3 7 7 O 1.21278 * 120.00565 * 114.42616 * 6 5 4 8 8 N 1.34782 * 119.99937 * 294.43455 * 6 5 4 9 9 C 1.46500 * 120.00226 * 174.93152 * 8 6 5 10 10 H 1.09000 * 110.88442 * 34.29859 * 9 8 6 11 11 C 1.54905 * 111.00644 * 270.41565 * 9 8 6 12 12 N 1.47464 * 104.81503 * 204.94789 * 11 9 8 13 13 C 1.36934 * 125.63227 * 204.14188 * 12 11 9 14 14 H 1.07999 * 119.99629 * 6.94874 * 13 12 11 15 15 C 1.38817 * 120.00014 * 186.94896 * 13 12 11 16 16 N 1.31611 * 120.00081 * 7.39526 * 15 13 12 17 17 Si 1.86792 * 119.99700 * 187.39802 * 15 13 12 18 18 H 1.48496 * 109.47496 * 94.96488 * 17 15 13 19 19 H 1.48502 * 109.47246 * 214.96549 * 17 15 13 20 20 H 1.48503 * 109.47525 * 334.96327 * 17 15 13 21 21 C 1.47030 * 108.71813 * 24.07137 * 12 11 9 22 22 C 1.54324 * 107.27227 * 358.97481 * 21 12 11 23 23 H 1.09001 * 110.71572 * 219.44806 * 22 21 12 24 24 O 1.42898 * 110.72065 * 96.17294 * 22 21 12 25 25 C 1.53008 * 117.50099 * 149.08268 * 5 4 3 26 26 C 1.53003 * 117.49798 * 80.42365 * 5 4 3 27 27 H 1.07994 * 119.99529 * 0.02562 * 1 2 3 28 28 H 1.07996 * 119.99727 * 179.72476 * 1 2 3 29 29 H 1.08007 * 119.99993 * 180.02562 * 2 1 3 30 30 H 1.09007 * 109.47211 * 245.00050 * 3 2 1 31 31 H 1.09000 * 109.47263 * 4.99600 * 3 2 1 32 32 H 1.08994 * 109.47179 * 297.08718 * 4 3 2 33 33 H 1.09005 * 109.46806 * 57.08063 * 4 3 2 34 34 H 0.96999 * 119.99880 * 354.92856 * 8 6 5 35 35 H 1.09001 * 110.36536 * 323.75982 * 11 9 8 36 36 H 1.09003 * 110.36680 * 86.07628 * 11 9 8 37 37 H 0.96998 * 120.00082 * 180.02562 * 16 15 13 38 38 H 1.09003 * 109.87946 * 239.55426 * 21 12 11 39 39 H 1.08995 * 109.87806 * 118.39578 * 21 12 11 40 40 H 0.96700 * 113.99964 * 66.47213 * 24 22 21 41 41 H 1.09004 * 117.49389 * 0.02562 * 25 5 4 42 42 H 1.08998 * 117.50188 * 145.02189 * 25 5 4 43 43 H 1.09004 * 117.50217 * 214.98014 * 26 5 4 44 44 H 1.09001 * 117.50014 * 0.02562 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 3.0351 1.3330 1.1816 5 6 3.8517 2.6262 1.1400 6 6 4.7781 2.7723 -0.0396 7 8 4.5818 3.6429 -0.8608 8 7 5.8248 1.9353 -0.1821 9 6 6.6599 2.0047 -1.3838 10 1 6.7447 3.0316 -1.7393 11 6 6.1116 1.0758 -2.4955 12 7 7.2818 0.7623 -3.3363 13 6 7.2407 0.3831 -4.6514 14 1 6.3044 0.4005 -5.1893 15 6 8.4025 -0.0237 -5.2931 16 7 9.5126 -0.1849 -4.6048 17 14 8.3901 -0.3424 -7.1336 18 1 8.8425 0.8771 -7.8502 19 1 9.3055 -1.4689 -7.4472 20 1 7.0126 -0.6887 -7.5669 21 6 8.5000 0.9261 -2.5293 22 6 8.0601 1.3886 -1.1243 23 1 8.7459 2.1404 -0.7336 24 8 7.9656 0.2762 -0.2324 25 6 4.3101 3.2156 2.4755 26 6 3.1920 3.8960 1.6816 27 1 -0.5399 0.9353 -0.0004 28 1 -0.5399 -0.9353 -0.0045 29 1 1.8500 -0.9354 -0.0004 30 1 2.6214 1.4025 -0.9314 31 1 1.3587 2.1316 0.0895 32 1 2.4737 1.2877 2.1147 33 1 3.7070 0.4769 1.1199 34 1 6.0252 1.2869 0.5110 35 1 5.7023 0.1640 -2.0604 36 1 5.3508 1.5925 -3.0806 37 1 10.3244 -0.4688 -5.0532 38 1 9.1461 1.6783 -2.9819 39 1 9.0280 -0.0248 -2.4583 40 1 8.8140 -0.1449 -0.0376 41 1 4.0302 2.6818 3.3837 42 1 5.2815 3.7093 2.5008 43 1 3.4283 4.8371 1.1850 44 1 2.1764 3.8100 2.0680 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001220280519.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:53 Heat of formation + Delta-G solvation = -43.532264 kcal Electronic energy + Delta-G solvation = -24354.160918 eV Core-core repulsion = 20886.379867 eV Total energy + Delta-G solvation = -3467.781051 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.38840 -39.78388 -37.96349 -36.47117 -35.86881 -35.41662 -33.58280 -31.07307 -30.32082 -28.91848 -26.67276 -25.37017 -23.89174 -23.26626 -22.30852 -21.62962 -20.61588 -20.48830 -19.13896 -18.32737 -17.80813 -16.96904 -16.75015 -16.52423 -16.17787 -15.83309 -15.67034 -15.02581 -14.89256 -14.77646 -14.62399 -14.40138 -14.03184 -13.90143 -13.24747 -13.19502 -13.12754 -12.83423 -12.79412 -12.39560 -12.31068 -12.25500 -12.12906 -11.97350 -11.94892 -11.87343 -11.33746 -10.97783 -10.93184 -10.79310 -10.71573 -10.18534 -10.07357 -8.96039 -7.89955 -5.28397 1.40671 1.43802 1.45689 1.54139 1.56047 2.06857 2.47067 2.76213 3.15660 3.26857 3.54410 3.62138 3.74978 3.84089 3.88526 3.92576 4.03709 4.14577 4.22704 4.30176 4.46481 4.53496 4.59464 4.63393 4.73656 4.77938 4.78953 4.95885 5.01010 5.02974 5.04443 5.17729 5.25357 5.26651 5.28755 5.46823 5.47241 5.64059 5.76787 5.90441 6.13376 6.61127 6.86766 7.03642 7.26978 7.67982 8.32326 9.18367 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.016739 B = 0.004092 C = 0.003615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1672.359582 B = 6841.362130 C = 7742.660313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.164 4.164 3 C -0.092 4.092 4 C -0.061 4.061 5 C -0.170 4.170 6 C 0.544 3.456 7 O -0.587 6.587 8 N -0.691 5.691 9 C 0.150 3.850 10 H 0.088 0.912 11 C 0.134 3.866 12 N -0.619 5.619 13 C -0.250 4.250 14 H 0.074 0.926 15 C -0.056 4.056 16 N -0.944 5.944 17 Si 0.978 3.022 18 H -0.286 1.286 19 H -0.288 1.288 20 H -0.272 1.272 21 C 0.152 3.848 22 C 0.095 3.905 23 H 0.092 0.908 24 O -0.563 6.563 25 C -0.135 4.135 26 C -0.147 4.147 27 H 0.101 0.899 28 H 0.108 0.892 29 H 0.109 0.891 30 H 0.038 0.962 31 H 0.072 0.928 32 H 0.102 0.898 33 H 0.072 0.928 34 H 0.418 0.582 35 H 0.023 0.977 36 H 0.024 0.976 37 H 0.250 0.750 38 H 0.010 0.990 39 H 0.045 0.955 40 H 0.399 0.601 41 H 0.134 0.866 42 H 0.095 0.905 43 H 0.083 0.917 44 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.058 2.827 18.709 21.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.182 4.182 3 C -0.130 4.130 4 C -0.099 4.099 5 C -0.173 4.173 6 C 0.332 3.668 7 O -0.467 6.467 8 N -0.342 5.342 9 C 0.043 3.957 10 H 0.106 0.894 11 C 0.008 3.992 12 N -0.346 5.346 13 C -0.379 4.379 14 H 0.092 0.908 15 C -0.250 4.250 16 N -0.592 5.592 17 Si 0.806 3.194 18 H -0.213 1.213 19 H -0.214 1.214 20 H -0.197 1.197 21 C 0.027 3.973 22 C 0.035 3.965 23 H 0.109 0.891 24 O -0.371 6.371 25 C -0.172 4.172 26 C -0.184 4.184 27 H 0.119 0.881 28 H 0.126 0.874 29 H 0.127 0.873 30 H 0.057 0.943 31 H 0.090 0.910 32 H 0.120 0.880 33 H 0.091 0.909 34 H 0.256 0.744 35 H 0.040 0.960 36 H 0.042 0.958 37 H 0.059 0.941 38 H 0.029 0.971 39 H 0.063 0.937 40 H 0.250 0.750 41 H 0.152 0.848 42 H 0.113 0.887 43 H 0.101 0.899 44 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -11.682 3.490 17.957 21.705 hybrid contribution 1.092 -0.633 -1.477 1.943 sum -10.590 2.857 16.480 19.796 Atomic orbital electron populations 1.24009 0.95625 1.02615 1.00485 1.22998 0.96501 0.98161 1.00519 1.20686 0.98291 0.95960 0.98040 1.21008 0.96300 0.93197 0.99352 1.21446 1.02415 0.99056 0.94397 1.20271 0.80442 0.79803 0.86256 1.90673 1.73747 1.36192 1.46057 1.45568 1.29041 1.38250 1.21379 1.21917 0.89517 0.98608 0.85666 0.89371 1.21840 0.90208 0.95569 0.91618 1.44551 1.01697 1.80043 1.08294 1.19395 0.95144 1.37444 0.85944 0.90838 1.25592 0.95597 1.01182 1.02639 1.70091 1.00637 1.53281 1.35219 0.85071 0.77547 0.77146 0.79628 1.21324 1.21449 1.19654 1.21810 0.88432 0.98768 0.88297 1.23053 0.95150 0.88604 0.89697 0.89078 1.86213 1.37983 1.47324 1.65606 1.23245 0.99393 1.01591 0.92999 1.23068 0.99498 0.94155 1.01671 0.88069 0.87363 0.87283 0.94324 0.90976 0.87975 0.90914 0.74370 0.95967 0.95772 0.94050 0.97147 0.93651 0.75039 0.84752 0.88666 0.89877 0.85707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.29 14.32 67.78 0.97 -2.32 16 2 C -0.16 -3.29 9.52 25.64 0.24 -3.04 16 3 C -0.09 -2.06 5.56 29.85 0.17 -1.89 16 4 C -0.06 -1.11 5.07 30.59 0.16 -0.95 16 5 C -0.17 -3.60 1.90 -52.93 -0.10 -3.70 16 6 C 0.54 16.88 6.41 87.65 0.56 17.45 16 7 O -0.59 -23.55 16.36 -3.02 -0.05 -23.60 16 8 N -0.69 -21.01 5.17 -435.97 -2.26 -23.26 16 9 C 0.15 5.65 3.29 46.38 0.15 5.80 16 10 H 0.09 3.62 7.57 -2.39 -0.02 3.61 16 11 C 0.13 6.18 6.92 86.85 0.60 6.78 16 12 N -0.62 -33.16 3.40 -691.87 -2.35 -35.51 16 13 C -0.25 -14.64 10.26 84.04 0.86 -13.78 16 14 H 0.07 4.23 7.84 -2.91 -0.02 4.20 16 15 C -0.06 -3.24 5.45 84.86 0.46 -2.78 16 16 N -0.94 -55.89 10.49 21.65 0.23 -55.66 16 17 Si 0.98 46.42 29.56 68.60 2.03 48.45 16 18 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 19 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 20 H -0.27 -12.40 7.11 99.48 0.71 -11.70 16 21 C 0.15 7.32 5.20 86.73 0.45 7.77 16 22 C 0.10 3.35 4.20 31.78 0.13 3.48 16 23 H 0.09 2.71 8.14 -2.39 -0.02 2.69 16 24 O -0.56 -16.82 12.13 -148.98 -1.81 -18.63 16 25 C -0.14 -2.00 9.93 30.62 0.30 -1.70 16 26 C -0.15 -2.65 9.78 30.62 0.30 -2.35 16 27 H 0.10 1.60 7.84 -2.91 -0.02 1.57 16 28 H 0.11 1.57 8.06 -2.91 -0.02 1.55 16 29 H 0.11 2.15 8.06 -2.91 -0.02 2.13 16 30 H 0.04 1.14 7.63 -2.38 -0.02 1.12 16 31 H 0.07 1.51 7.79 -2.39 -0.02 1.49 16 32 H 0.10 1.30 8.09 -2.39 -0.02 1.28 16 33 H 0.07 1.35 8.14 -2.38 -0.02 1.33 16 34 H 0.42 10.90 7.57 -92.71 -0.70 10.19 16 35 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.02 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.25 14.30 8.31 -92.71 -0.77 13.53 16 38 H 0.01 0.55 7.94 -2.39 -0.02 0.53 16 39 H 0.05 2.40 6.89 -2.39 -0.02 2.38 16 40 H 0.40 8.92 9.12 -74.06 -0.68 8.25 16 41 H 0.13 1.20 8.14 -2.39 -0.02 1.18 16 42 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 43 H 0.08 1.85 8.00 -2.38 -0.02 1.83 16 44 H 0.12 1.64 8.14 -2.39 -0.02 1.62 16 Total: -1.00 -73.14 363.94 0.67 -72.47 By element: Atomic # 1 Polarization: 27.35 SS G_CDS: -0.38 Total: 26.97 kcal Atomic # 6 Polarization: 3.52 SS G_CDS: 5.26 Total: 8.78 kcal Atomic # 7 Polarization: -110.06 SS G_CDS: -4.38 Total: -114.44 kcal Atomic # 8 Polarization: -40.37 SS G_CDS: -1.86 Total: -42.23 kcal Atomic # 14 Polarization: 46.42 SS G_CDS: 2.03 Total: 48.45 kcal Total: -73.14 0.67 -72.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001220280519.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.933 kcal (2) G-P(sol) polarization free energy of solvation -73.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds