Wall clock time and date at job start Tue Mar 31 2020 07:46:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50697 * 120.00246 * 2 1 4 4 C 1.53002 * 109.47205 * 120.00059 * 3 2 1 5 5 O 1.42898 * 109.47146 * 0.02562 * 3 2 1 6 6 C 1.53004 * 109.47121 * 239.99943 * 3 2 1 7 7 C 1.50697 * 109.47021 * 55.83377 * 6 3 2 8 8 O 1.21284 * 119.99908 * 5.28014 * 7 6 3 9 9 N 1.34772 * 120.00151 * 185.28039 * 7 6 3 10 10 C 1.47292 * 136.54515 * 359.97438 * 9 7 6 11 11 C 1.52793 * 87.32376 * 150.71961 * 10 9 7 12 12 H 1.08996 * 114.70346 * 142.41467 * 11 10 9 13 13 C 1.53065 * 111.38374 * 274.43200 * 11 10 9 14 14 C 1.53963 * 108.39306 * 144.15267 * 13 11 10 15 15 N 1.46540 * 107.57794 * 299.97479 * 14 13 11 16 16 C 1.36929 * 119.73883 * 237.77024 * 15 14 13 17 17 H 1.08003 * 119.99920 * 28.58579 * 16 15 14 18 18 C 1.38811 * 120.00065 * 208.58219 * 16 15 14 19 19 N 1.31613 * 120.00017 * 10.24139 * 18 16 15 20 20 Si 1.86800 * 119.99997 * 190.23712 * 18 16 15 21 21 H 1.48505 * 109.47143 * 60.00109 * 20 18 16 22 22 H 1.48504 * 109.47310 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47199 * 300.00463 * 20 18 16 24 24 C 1.45699 * 120.51973 * 57.49926 * 15 14 13 25 25 C 1.46471 * 136.54556 * 180.02562 * 9 7 6 26 26 H 1.09002 * 111.43860 * 97.09447 * 25 9 7 27 27 H 1.08002 * 119.99544 * 359.97438 * 1 2 3 28 28 H 1.07998 * 120.00126 * 180.02562 * 1 2 3 29 29 H 1.08003 * 119.99838 * 179.97438 * 2 1 3 30 30 H 1.09001 * 109.47078 * 184.84699 * 4 3 2 31 31 H 1.08998 * 109.46954 * 304.84208 * 4 3 2 32 32 H 1.08999 * 109.47161 * 64.84888 * 4 3 2 33 33 H 0.96703 * 113.99644 * 299.99882 * 5 3 2 34 34 H 1.08998 * 109.46967 * 295.83706 * 6 3 2 35 35 H 1.09003 * 109.46910 * 175.83197 * 6 3 2 36 36 H 1.08998 * 113.52925 * 266.07560 * 10 9 7 37 37 H 1.09002 * 113.52462 * 36.70401 * 10 9 7 38 38 H 1.09008 * 109.51535 * 262.81748 * 13 11 10 39 39 H 1.08995 * 109.51800 * 22.92700 * 13 11 10 40 40 H 1.09007 * 108.92753 * 181.12003 * 14 13 11 41 41 H 1.08992 * 111.14031 * 60.10090 * 14 13 11 42 42 H 0.97003 * 120.00241 * 180.02562 * 19 18 16 43 43 H 1.09001 * 108.79042 * 81.16109 * 24 15 14 44 44 H 1.09000 * 108.78109 * 199.47926 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 2.9432 1.3861 1.2492 5 8 1.1350 2.3912 0.0006 6 6 2.9432 1.3860 -1.2493 7 6 2.0893 1.2037 -2.4775 8 8 0.8839 1.1224 -2.3714 9 7 2.6652 1.1311 -3.6939 10 6 4.0347 1.1839 -4.2334 11 6 3.5455 0.2857 -5.3685 12 1 3.9720 0.5131 -6.3454 13 6 3.6101 -1.1928 -4.9776 14 6 2.4065 -1.9154 -5.6098 15 7 1.1894 -1.2892 -5.0864 16 6 0.2639 -2.0513 -4.4250 17 1 0.5762 -2.9349 -3.8881 18 6 -1.0757 -1.6882 -4.4443 19 7 -1.4882 -0.7371 -5.2552 20 14 -2.2932 -2.5496 -3.3194 21 1 -1.8876 -2.3493 -1.9050 22 1 -3.6494 -1.9827 -3.5310 23 1 -2.3106 -4.0020 -3.6284 24 6 0.9592 0.1391 -5.2592 25 6 2.2118 0.9649 -5.0767 26 1 2.1318 1.9243 -5.5878 27 1 -0.5399 0.9354 0.0004 28 1 -0.5400 -0.9353 0.0004 29 1 1.8500 -0.9354 0.0004 30 1 3.4219 2.3643 1.2937 31 1 2.3275 1.2422 2.1371 32 1 3.7069 0.6095 1.2069 33 1 0.5434 2.4033 -0.7643 34 1 3.6992 0.6018 -1.2127 35 1 3.4313 2.3599 -1.2874 36 1 4.3391 2.1812 -4.5509 37 1 4.7731 0.6997 -3.5942 38 1 4.5290 -1.6322 -5.3657 39 1 3.5935 -1.2834 -3.8916 40 1 2.4330 -2.9661 -5.3204 41 1 2.4246 -1.8325 -6.6964 42 1 -2.4242 -0.4831 -5.2685 43 1 0.5674 0.3129 -6.2614 44 1 0.2165 0.4654 -4.5312 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001221516533.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:46:04 Heat of formation + Delta-G solvation = 7.334506 kcal Electronic energy + Delta-G solvation = -26036.486767 eV Core-core repulsion = 22570.911465 eV Total energy + Delta-G solvation = -3465.575302 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.65365 -39.03097 -36.62654 -35.17723 -32.66360 -32.10671 -31.10078 -30.11797 -29.34594 -27.39648 -26.77564 -23.82303 -23.02922 -22.01676 -21.03183 -19.89192 -19.21105 -17.76333 -16.98142 -16.52267 -15.89956 -15.83207 -15.60348 -14.76859 -14.39760 -14.08608 -13.82232 -13.59419 -13.23818 -13.07668 -12.76123 -12.50114 -12.36181 -12.23329 -12.01301 -11.85497 -11.67768 -11.45062 -11.35272 -11.06448 -10.74113 -10.66681 -10.61596 -10.47874 -10.22017 -9.88423 -9.81353 -9.79868 -9.55348 -9.09582 -8.63806 -8.28002 -8.06053 -6.52452 -5.63927 -3.09964 2.83417 3.22789 3.30645 3.46579 3.52051 3.53491 4.47459 4.60245 4.70793 4.72403 4.95601 5.04516 5.17383 5.42646 5.44094 5.50046 5.55556 5.58562 5.61405 5.65088 5.69114 5.74517 5.90247 5.93449 5.95097 6.10534 6.15166 6.20647 6.31891 6.39519 6.47333 6.53200 6.60511 6.79022 7.00856 7.09246 7.27297 7.51956 7.79707 7.94444 7.95771 8.38517 8.60907 8.78951 9.38126 10.01025 10.50326 11.43905 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.012230 B = 0.008412 C = 0.005736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2288.987209 B = 3327.925862 C = 4880.122244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.196 4.196 3 C 0.181 3.819 4 C -0.132 4.132 5 O -0.566 6.566 6 C -0.159 4.159 7 C 0.540 3.460 8 O -0.514 6.514 9 N -0.633 5.633 10 C 0.094 3.906 11 C -0.115 4.115 12 H 0.088 0.912 13 C -0.112 4.112 14 C 0.147 3.853 15 N -0.583 5.583 16 C -0.251 4.251 17 H 0.058 0.942 18 C 0.015 3.985 19 N -0.904 5.904 20 Si 0.900 3.100 21 H -0.282 1.282 22 H -0.292 1.292 23 H -0.286 1.286 24 C 0.170 3.830 25 C 0.117 3.883 26 H 0.071 0.929 27 H 0.099 0.901 28 H 0.092 0.908 29 H 0.105 0.895 30 H 0.061 0.939 31 H 0.064 0.936 32 H 0.068 0.932 33 H 0.389 0.611 34 H 0.092 0.908 35 H 0.093 0.907 36 H 0.077 0.923 37 H 0.068 0.932 38 H 0.052 0.948 39 H 0.061 0.939 40 H 0.053 0.947 41 H 0.023 0.977 42 H 0.252 0.748 43 H 0.028 0.972 44 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.433 4.895 5.329 15.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.214 4.214 3 C 0.139 3.861 4 C -0.189 4.189 5 O -0.377 6.377 6 C -0.199 4.199 7 C 0.330 3.670 8 O -0.389 6.389 9 N -0.369 5.369 10 C -0.029 4.029 11 C -0.134 4.134 12 H 0.107 0.893 13 C -0.152 4.152 14 C 0.020 3.980 15 N -0.306 5.306 16 C -0.380 4.380 17 H 0.076 0.924 18 C -0.184 4.184 19 N -0.549 5.549 20 Si 0.731 3.269 21 H -0.209 1.209 22 H -0.217 1.217 23 H -0.213 1.213 24 C 0.044 3.956 25 C 0.013 3.987 26 H 0.089 0.911 27 H 0.117 0.883 28 H 0.110 0.890 29 H 0.123 0.877 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.087 0.913 33 H 0.242 0.758 34 H 0.111 0.889 35 H 0.111 0.889 36 H 0.095 0.905 37 H 0.087 0.913 38 H 0.070 0.930 39 H 0.079 0.921 40 H 0.071 0.929 41 H 0.041 0.959 42 H 0.062 0.938 43 H 0.046 0.954 44 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 12.759 5.079 6.141 15.043 hybrid contribution -0.759 -0.494 -0.111 0.912 sum 12.000 4.585 6.030 14.191 Atomic orbital electron populations 1.23596 0.95982 1.01601 0.96203 1.23088 0.96749 0.97389 1.04189 1.19743 0.88047 0.85486 0.92783 1.21686 0.98689 1.02088 0.96427 1.86352 1.51093 1.48818 1.51463 1.22356 0.99764 1.03948 0.93824 1.19865 0.88331 0.76456 0.82377 1.90706 1.14299 1.49099 1.84840 1.49573 1.09465 1.72207 1.05675 1.23096 0.85949 0.99245 0.94632 1.22575 0.97026 0.96133 0.97645 0.89339 1.21976 0.99276 0.93048 1.00871 1.20910 0.86513 0.95514 0.95034 1.43403 1.19515 1.02847 1.64806 1.18977 0.86688 1.07755 1.24629 0.92446 1.24986 0.96880 0.98601 0.97911 1.69963 1.14917 1.32218 1.37771 0.86413 0.80613 0.78731 0.81169 1.20883 1.21744 1.21296 1.20162 0.91655 0.82640 1.01146 1.22728 0.98171 0.98184 0.79592 0.91130 0.88330 0.88956 0.87659 0.91977 0.91678 0.91296 0.75813 0.88939 0.88899 0.90538 0.91321 0.92966 0.92054 0.92880 0.95869 0.93797 0.95398 0.88021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.56 12.62 29.01 0.37 -2.19 16 2 C -0.20 -3.34 7.42 -36.03 -0.27 -3.61 16 3 C 0.18 2.71 1.08 -91.77 -0.10 2.61 16 4 C -0.13 -1.55 8.82 37.16 0.33 -1.22 16 5 O -0.57 -9.49 11.94 -52.20 -0.62 -10.11 16 6 C -0.16 -2.26 4.85 -27.88 -0.14 -2.39 16 7 C 0.54 10.02 7.50 -10.99 -0.08 9.93 16 8 O -0.51 -11.55 11.19 -11.42 -0.13 -11.67 16 9 N -0.63 -10.98 3.27 -191.14 -0.62 -11.60 16 10 C 0.09 1.21 7.76 -12.21 -0.09 1.12 16 11 C -0.11 -1.71 4.47 -90.97 -0.41 -2.11 16 12 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 13 C -0.11 -1.83 5.72 -26.20 -0.15 -1.98 16 14 C 0.15 3.01 6.49 -3.52 -0.02 2.99 16 15 N -0.58 -14.68 3.00 -174.37 -0.52 -15.20 16 16 C -0.25 -7.09 9.49 -15.06 -0.14 -7.23 16 17 H 0.06 1.62 7.84 -52.48 -0.41 1.21 16 18 C 0.01 0.43 5.02 -17.43 -0.09 0.35 16 19 N -0.90 -27.18 10.93 55.49 0.61 -26.58 16 20 Si 0.90 23.08 29.57 -169.99 -5.03 18.05 16 21 H -0.28 -7.21 7.11 56.52 0.40 -6.81 16 22 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16 23 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 24 C 0.17 4.16 4.57 -5.41 -0.02 4.13 16 25 C 0.12 2.19 4.10 -77.65 -0.32 1.87 16 26 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 27 H 0.10 1.83 6.41 -52.49 -0.34 1.49 16 28 H 0.09 1.77 8.06 -52.49 -0.42 1.35 16 29 H 0.11 1.73 8.06 -52.48 -0.42 1.31 16 30 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.39 6.93 5.79 45.56 0.26 7.19 16 34 H 0.09 1.17 8.14 -51.93 -0.42 0.74 16 35 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.07 0.77 8.01 -51.93 -0.42 0.35 16 38 H 0.05 0.70 8.14 -51.92 -0.42 0.28 16 39 H 0.06 1.10 7.64 -51.93 -0.40 0.70 16 40 H 0.05 1.08 7.89 -51.93 -0.41 0.67 16 41 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.25 7.44 8.31 -40.82 -0.34 7.10 16 43 H 0.03 0.75 7.95 -51.93 -0.41 0.33 16 44 H 0.10 2.91 5.10 -51.93 -0.26 2.65 16 LS Contribution 343.62 15.07 5.18 5.18 Total: -1.00 -32.65 343.62 -8.87 -41.52 By element: Atomic # 1 Polarization: 14.75 SS G_CDS: -6.59 Total: 8.16 kcal Atomic # 6 Polarization: 3.40 SS G_CDS: -1.14 Total: 2.26 kcal Atomic # 7 Polarization: -52.84 SS G_CDS: -0.54 Total: -53.38 kcal Atomic # 8 Polarization: -21.03 SS G_CDS: -0.75 Total: -21.78 kcal Atomic # 14 Polarization: 23.08 SS G_CDS: -5.03 Total: 18.05 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -32.65 -8.87 -41.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001221516533.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.850 kcal (2) G-P(sol) polarization free energy of solvation -32.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.515 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds