Wall clock time and date at job start Tue Mar 31 2020 07:46:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50697 * 120.00246 * 2 1 4 4 C 1.53002 * 109.47205 * 120.00059 * 3 2 1 5 5 O 1.42898 * 109.47146 * 0.02562 * 3 2 1 6 6 C 1.53004 * 109.47121 * 239.99943 * 3 2 1 7 7 C 1.50697 * 109.47021 * 55.83377 * 6 3 2 8 8 O 1.21284 * 119.99908 * 5.28014 * 7 6 3 9 9 N 1.34772 * 120.00151 * 185.28039 * 7 6 3 10 10 C 1.47292 * 136.54515 * 359.97438 * 9 7 6 11 11 C 1.52793 * 87.32376 * 150.71961 * 10 9 7 12 12 H 1.08996 * 114.70346 * 142.41467 * 11 10 9 13 13 C 1.53065 * 111.38374 * 274.43200 * 11 10 9 14 14 C 1.53963 * 108.39306 * 144.15267 * 13 11 10 15 15 N 1.46540 * 107.57794 * 299.97479 * 14 13 11 16 16 C 1.36929 * 119.73883 * 237.77024 * 15 14 13 17 17 H 1.08003 * 119.99920 * 28.58579 * 16 15 14 18 18 C 1.38811 * 120.00065 * 208.58219 * 16 15 14 19 19 N 1.31613 * 120.00017 * 10.24139 * 18 16 15 20 20 Si 1.86800 * 119.99997 * 190.23712 * 18 16 15 21 21 H 1.48505 * 109.47143 * 60.00109 * 20 18 16 22 22 H 1.48504 * 109.47310 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47199 * 300.00463 * 20 18 16 24 24 C 1.45699 * 120.51973 * 57.49926 * 15 14 13 25 25 C 1.46471 * 136.54556 * 180.02562 * 9 7 6 26 26 H 1.09002 * 111.43860 * 97.09447 * 25 9 7 27 27 H 1.08002 * 119.99544 * 359.97438 * 1 2 3 28 28 H 1.07998 * 120.00126 * 180.02562 * 1 2 3 29 29 H 1.08003 * 119.99838 * 179.97438 * 2 1 3 30 30 H 1.09001 * 109.47078 * 184.84699 * 4 3 2 31 31 H 1.08998 * 109.46954 * 304.84208 * 4 3 2 32 32 H 1.08999 * 109.47161 * 64.84888 * 4 3 2 33 33 H 0.96703 * 113.99644 * 299.99882 * 5 3 2 34 34 H 1.08998 * 109.46967 * 295.83706 * 6 3 2 35 35 H 1.09003 * 109.46910 * 175.83197 * 6 3 2 36 36 H 1.08998 * 113.52925 * 266.07560 * 10 9 7 37 37 H 1.09002 * 113.52462 * 36.70401 * 10 9 7 38 38 H 1.09008 * 109.51535 * 262.81748 * 13 11 10 39 39 H 1.08995 * 109.51800 * 22.92700 * 13 11 10 40 40 H 1.09007 * 108.92753 * 181.12003 * 14 13 11 41 41 H 1.08992 * 111.14031 * 60.10090 * 14 13 11 42 42 H 0.97003 * 120.00241 * 180.02562 * 19 18 16 43 43 H 1.09001 * 108.79042 * 81.16109 * 24 15 14 44 44 H 1.09000 * 108.78109 * 199.47926 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 2.9432 1.3861 1.2492 5 8 1.1350 2.3912 0.0006 6 6 2.9432 1.3860 -1.2493 7 6 2.0893 1.2037 -2.4775 8 8 0.8839 1.1224 -2.3714 9 7 2.6652 1.1311 -3.6939 10 6 4.0347 1.1839 -4.2334 11 6 3.5455 0.2857 -5.3685 12 1 3.9720 0.5131 -6.3454 13 6 3.6101 -1.1928 -4.9776 14 6 2.4065 -1.9154 -5.6098 15 7 1.1894 -1.2892 -5.0864 16 6 0.2639 -2.0513 -4.4250 17 1 0.5762 -2.9349 -3.8881 18 6 -1.0757 -1.6882 -4.4443 19 7 -1.4882 -0.7371 -5.2552 20 14 -2.2932 -2.5496 -3.3194 21 1 -1.8876 -2.3493 -1.9050 22 1 -3.6494 -1.9827 -3.5310 23 1 -2.3106 -4.0020 -3.6284 24 6 0.9592 0.1391 -5.2592 25 6 2.2118 0.9649 -5.0767 26 1 2.1318 1.9243 -5.5878 27 1 -0.5399 0.9354 0.0004 28 1 -0.5400 -0.9353 0.0004 29 1 1.8500 -0.9354 0.0004 30 1 3.4219 2.3643 1.2937 31 1 2.3275 1.2422 2.1371 32 1 3.7069 0.6095 1.2069 33 1 0.5434 2.4033 -0.7643 34 1 3.6992 0.6018 -1.2127 35 1 3.4313 2.3599 -1.2874 36 1 4.3391 2.1812 -4.5509 37 1 4.7731 0.6997 -3.5942 38 1 4.5290 -1.6322 -5.3657 39 1 3.5935 -1.2834 -3.8916 40 1 2.4330 -2.9661 -5.3204 41 1 2.4246 -1.8325 -6.6964 42 1 -2.4242 -0.4831 -5.2685 43 1 0.5674 0.3129 -6.2614 44 1 0.2165 0.4654 -4.5312 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001221516533.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:46:03 Heat of formation + Delta-G solvation = -15.090493 kcal Electronic energy + Delta-G solvation = -26037.459188 eV Core-core repulsion = 22570.911465 eV Total energy + Delta-G solvation = -3466.547723 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.98186 -40.32586 -38.02605 -36.99002 -33.98793 -33.87502 -32.45447 -31.84722 -30.71918 -28.85050 -28.15811 -25.62720 -24.50278 -23.30052 -22.55501 -21.29820 -20.49087 -19.45949 -18.46530 -17.90280 -17.36285 -17.32246 -17.06871 -16.43049 -15.80806 -15.72946 -15.44157 -15.01535 -14.79422 -14.46930 -14.32186 -14.00252 -13.67633 -13.40441 -13.27642 -13.10531 -13.06125 -12.85665 -12.75383 -12.69686 -12.58037 -12.31829 -12.23155 -11.98246 -11.95401 -11.74143 -11.46717 -11.10825 -11.01216 -10.65751 -10.44734 -9.97445 -9.40015 -8.59648 -7.83024 -5.30618 1.34193 1.40561 1.43280 1.44043 1.89600 2.05607 2.48002 3.29818 3.32947 3.50072 3.56613 3.75690 3.82504 3.83891 3.99803 4.24210 4.29615 4.40713 4.50352 4.57793 4.59426 4.65516 4.67820 4.70151 4.80089 4.83468 4.88397 4.95150 4.98133 5.08208 5.09462 5.15621 5.28495 5.35251 5.46386 5.58078 5.67420 5.73193 5.86446 5.88363 6.42737 6.62546 7.08556 7.22570 7.44804 7.98786 8.38289 9.20348 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.012230 B = 0.008412 C = 0.005736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2288.987209 B = 3327.925862 C = 4880.122244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.181 4.181 3 C 0.172 3.828 4 C -0.126 4.126 5 O -0.575 6.575 6 C -0.144 4.144 7 C 0.523 3.477 8 O -0.568 6.568 9 N -0.640 5.640 10 C 0.110 3.890 11 C -0.106 4.106 12 H 0.123 0.877 13 C -0.100 4.100 14 C 0.137 3.863 15 N -0.599 5.599 16 C -0.251 4.251 17 H 0.054 0.946 18 C -0.038 4.038 19 N -0.932 5.932 20 Si 0.951 3.049 21 H -0.286 1.286 22 H -0.297 1.297 23 H -0.272 1.272 24 C 0.185 3.815 25 C 0.104 3.896 26 H 0.085 0.915 27 H 0.090 0.910 28 H 0.075 0.925 29 H 0.113 0.887 30 H 0.077 0.923 31 H 0.058 0.942 32 H 0.095 0.905 33 H 0.380 0.620 34 H 0.119 0.881 35 H 0.121 0.879 36 H 0.112 0.888 37 H 0.098 0.902 38 H 0.095 0.905 39 H 0.047 0.953 40 H 0.046 0.954 41 H 0.028 0.972 42 H 0.243 0.757 43 H -0.012 1.012 44 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.048 5.271 5.832 19.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.199 4.199 3 C 0.131 3.869 4 C -0.183 4.183 5 O -0.385 6.385 6 C -0.183 4.183 7 C 0.314 3.686 8 O -0.447 6.447 9 N -0.376 5.376 10 C -0.011 4.011 11 C -0.125 4.125 12 H 0.141 0.859 13 C -0.139 4.139 14 C 0.012 3.988 15 N -0.322 5.322 16 C -0.382 4.382 17 H 0.072 0.928 18 C -0.234 4.234 19 N -0.579 5.579 20 Si 0.780 3.220 21 H -0.212 1.212 22 H -0.223 1.223 23 H -0.198 1.198 24 C 0.059 3.941 25 C -0.001 4.001 26 H 0.103 0.897 27 H 0.109 0.891 28 H 0.094 0.906 29 H 0.131 0.869 30 H 0.096 0.904 31 H 0.078 0.922 32 H 0.114 0.886 33 H 0.232 0.768 34 H 0.137 0.863 35 H 0.139 0.861 36 H 0.130 0.870 37 H 0.116 0.884 38 H 0.114 0.886 39 H 0.065 0.935 40 H 0.065 0.935 41 H 0.046 0.954 42 H 0.052 0.948 43 H 0.006 0.994 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 17.460 5.438 6.637 19.454 hybrid contribution -2.166 -0.664 -0.340 2.291 sum 15.293 4.773 6.297 17.214 Atomic orbital electron populations 1.23476 0.97018 1.00508 0.99643 1.23427 0.96288 0.99132 1.01076 1.20097 0.88011 0.83589 0.95171 1.21711 0.98479 1.04055 0.94075 1.86348 1.51455 1.49542 1.51147 1.22322 0.99058 1.06380 0.90571 1.20770 0.88290 0.75636 0.83859 1.90710 1.16893 1.51368 1.85749 1.49757 1.11739 1.71405 1.04696 1.23278 0.83877 1.00763 0.93180 1.22593 0.94050 0.95271 1.00538 0.85878 1.21822 0.98537 0.93812 0.99715 1.21159 0.86440 0.95714 0.95474 1.43625 1.20439 1.03227 1.64943 1.19232 0.87478 1.07526 1.23959 0.92828 1.25621 0.98560 0.99712 0.99506 1.70142 1.14357 1.33833 1.39526 0.85596 0.78514 0.78507 0.79367 1.21241 1.22301 1.19791 1.19740 0.93833 0.83269 0.97301 1.22676 0.97344 0.98375 0.81722 0.89714 0.89142 0.90629 0.86908 0.90357 0.92249 0.88618 0.76766 0.86268 0.86072 0.87043 0.88370 0.88627 0.93459 0.93493 0.95417 0.94797 0.99426 0.93004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.69 12.62 67.78 0.86 -5.83 16 2 C -0.18 -6.15 7.42 25.65 0.19 -5.96 16 3 C 0.17 4.84 1.08 -11.54 -0.01 4.83 16 4 C -0.13 -2.51 8.82 71.98 0.64 -1.88 16 5 O -0.57 -19.13 11.94 -132.75 -1.58 -20.71 16 6 C -0.14 -3.57 4.85 29.85 0.14 -3.43 16 7 C 0.52 18.72 7.50 87.66 0.66 19.38 16 8 O -0.57 -26.41 11.19 13.19 0.15 -26.26 16 9 N -0.64 -20.55 3.27 -877.03 -2.87 -23.42 16 10 C 0.11 2.17 7.76 80.66 0.63 2.80 16 11 C -0.11 -2.66 4.47 -11.01 -0.05 -2.71 16 12 H 0.12 2.35 8.14 -2.39 -0.02 2.33 16 13 C -0.10 -2.86 5.72 30.94 0.18 -2.68 16 14 C 0.14 5.45 6.49 86.70 0.56 6.02 16 15 N -0.60 -30.75 3.00 -705.58 -2.11 -32.86 16 16 C -0.25 -14.67 9.49 84.03 0.80 -13.88 16 17 H 0.05 3.10 7.84 -2.91 -0.02 3.08 16 18 C -0.04 -2.33 5.02 84.86 0.43 -1.90 16 19 N -0.93 -59.37 10.93 21.65 0.24 -59.13 16 20 Si 0.95 49.61 29.57 68.60 2.03 51.64 16 21 H -0.29 -14.91 7.11 99.48 0.71 -14.20 16 22 H -0.30 -15.59 7.11 99.48 0.71 -14.88 16 23 H -0.27 -13.42 7.11 99.48 0.71 -12.71 16 24 C 0.18 9.38 4.57 85.92 0.39 9.77 16 25 C 0.10 3.72 4.10 38.71 0.16 3.88 16 26 H 0.09 2.78 8.14 -2.39 -0.02 2.76 16 27 H 0.09 3.64 6.41 -2.91 -0.02 3.62 16 28 H 0.08 3.13 8.06 -2.91 -0.02 3.10 16 29 H 0.11 3.59 8.06 -2.91 -0.02 3.57 16 30 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.38 14.17 5.79 -74.06 -0.43 13.74 16 34 H 0.12 2.35 8.14 -2.39 -0.02 2.34 16 35 H 0.12 2.39 8.14 -2.39 -0.02 2.37 16 36 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.10 1.46 8.01 -2.39 -0.02 1.44 16 38 H 0.10 1.99 8.14 -2.38 -0.02 1.97 16 39 H 0.05 1.50 7.64 -2.39 -0.02 1.49 16 40 H 0.05 1.88 7.89 -2.38 -0.02 1.86 16 41 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 42 H 0.24 15.27 8.31 -92.71 -0.77 14.50 16 43 H -0.01 -0.68 7.95 -2.39 -0.02 -0.70 16 44 H 0.05 3.15 5.10 -2.39 -0.01 3.14 16 Total: -1.00 -78.94 343.62 1.96 -76.98 By element: Atomic # 1 Polarization: 24.80 SS G_CDS: 0.55 Total: 25.36 kcal Atomic # 6 Polarization: 2.85 SS G_CDS: 5.56 Total: 8.41 kcal Atomic # 7 Polarization: -110.67 SS G_CDS: -4.74 Total: -115.42 kcal Atomic # 8 Polarization: -45.54 SS G_CDS: -1.44 Total: -46.97 kcal Atomic # 14 Polarization: 49.61 SS G_CDS: 2.03 Total: 51.64 kcal Total: -78.94 1.96 -76.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001221516533.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.893 kcal (2) G-P(sol) polarization free energy of solvation -78.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds