Wall clock time and date at job start Tue Mar 31 2020 07:46:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50702 * 119.99782 * 2 1 4 4 C 1.53002 * 109.46947 * 240.00091 * 3 2 1 5 5 O 1.42904 * 109.47268 * 359.97438 * 3 2 1 6 6 C 1.52993 * 109.47309 * 120.00258 * 3 2 1 7 7 C 1.50702 * 109.47309 * 179.97438 * 6 3 2 8 8 O 1.21281 * 120.00178 * 359.97438 * 7 6 3 9 9 N 1.34778 * 119.99880 * 179.97438 * 7 6 3 10 10 C 1.47286 * 136.54575 * 0.02562 * 9 7 6 11 11 C 1.54078 * 87.60926 * 151.38172 * 10 9 7 12 12 H 1.09002 * 115.04528 * 141.62729 * 11 10 9 13 13 C 1.53066 * 111.39242 * 273.97325 * 11 10 9 14 14 C 1.52707 * 109.28308 * 142.28636 * 13 11 10 15 15 N 1.46536 * 108.49040 * 301.79793 * 14 13 11 16 16 C 1.36938 * 119.73427 * 236.40244 * 15 14 13 17 17 H 1.07998 * 120.00232 * 25.17257 * 16 15 14 18 18 C 1.38811 * 119.99688 * 205.17653 * 16 15 14 19 19 N 1.31618 * 120.00721 * 15.80116 * 18 16 15 20 20 Si 1.86810 * 119.99756 * 196.07540 * 18 16 15 21 21 H 1.48492 * 109.47189 * 179.72146 * 20 18 16 22 22 H 1.48494 * 109.47181 * 299.72736 * 20 18 16 23 23 H 1.48505 * 109.46855 * 59.72588 * 20 18 16 24 24 C 1.45697 * 120.53179 * 56.11788 * 15 14 13 25 25 C 1.46470 * 136.53881 * 179.97438 * 9 7 6 26 26 H 1.09002 * 111.43655 * 97.10547 * 25 9 7 27 27 H 1.08000 * 120.00136 * 0.02562 * 1 2 3 28 28 H 1.07998 * 119.99434 * 180.02562 * 1 2 3 29 29 H 1.07997 * 120.00179 * 180.02562 * 2 1 3 30 30 H 1.08997 * 109.47068 * 299.99639 * 4 3 2 31 31 H 1.08998 * 109.47292 * 60.00450 * 4 3 2 32 32 H 1.09009 * 109.47181 * 179.97438 * 4 3 2 33 33 H 0.96702 * 113.99272 * 60.00607 * 5 3 2 34 34 H 1.08997 * 109.47486 * 59.99883 * 6 3 2 35 35 H 1.09007 * 109.46952 * 299.99778 * 6 3 2 36 36 H 1.08996 * 113.52733 * 266.06611 * 10 9 7 37 37 H 1.08997 * 113.53029 * 36.69504 * 10 9 7 38 38 H 1.09000 * 109.51261 * 262.32261 * 13 11 10 39 39 H 1.08999 * 109.51616 * 22.43242 * 13 11 10 40 40 H 1.08995 * 109.62537 * 182.01269 * 14 13 11 41 41 H 1.09005 * 109.55654 * 61.53493 * 14 13 11 42 42 H 0.96996 * 120.00182 * 180.02562 * 19 18 16 43 43 H 1.09004 * 108.79044 * 81.16310 * 24 15 14 44 44 H 1.08995 * 108.79311 * 199.49614 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.9431 1.3862 -1.2493 5 8 1.1349 2.3913 -0.0006 6 6 2.9432 1.3862 1.2491 7 6 3.6971 2.6911 1.2488 8 8 3.5461 3.4785 0.3388 9 7 4.5392 2.9831 2.2599 10 6 4.9877 2.3284 3.5006 11 6 6.3145 3.0973 3.3504 12 1 6.7443 3.4625 4.2831 13 6 7.2981 2.3432 2.4521 14 6 8.0669 3.3451 1.5935 15 7 7.1029 4.1178 0.8055 16 6 7.2089 4.1462 -0.5594 17 1 7.6937 3.3338 -1.0804 18 6 6.6933 5.2191 -1.2735 19 7 6.3879 6.3380 -0.6512 20 14 6.4257 5.0723 -3.1164 21 1 5.8638 6.3441 -3.6378 22 1 7.7223 4.7934 -3.7843 23 1 5.4780 3.9627 -3.3922 24 6 6.0288 4.8512 1.4623 25 6 5.4223 4.0945 2.6206 26 1 4.9416 4.7727 3.3257 27 1 -0.5400 0.9353 -0.0004 28 1 -0.5399 -0.9353 0.0004 29 1 1.8501 -0.9353 -0.0004 30 1 3.6515 0.5578 -1.2492 31 1 2.3165 1.3285 -2.1392 32 1 3.4878 2.3305 -1.2495 33 1 0.5434 2.4034 0.7643 34 1 3.6515 0.5578 1.2492 35 1 2.3165 1.3285 2.1392 36 1 4.4126 2.6205 4.3792 37 1 5.0979 1.2480 3.4073 38 1 7.9972 1.7799 3.0702 39 1 6.7494 1.6580 1.8060 40 1 8.7437 2.8118 0.9261 41 1 8.6368 4.0154 2.2370 42 1 6.0272 7.0875 -1.1502 43 1 6.4239 5.7983 1.8298 44 1 5.2467 5.0576 0.7317 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001221516534.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:46:08 Heat of formation + Delta-G solvation = 11.649088 kcal Electronic energy + Delta-G solvation = -25733.842464 eV Core-core repulsion = 22268.454257 eV Total energy + Delta-G solvation = -3465.388208 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.53378 -38.99548 -36.85606 -35.15159 -32.93156 -32.11219 -31.18475 -30.10823 -29.34280 -27.29753 -26.65720 -23.78880 -23.15944 -22.23587 -21.01871 -19.71673 -19.53104 -17.70462 -17.15147 -16.48883 -15.84938 -15.74865 -15.51903 -14.80630 -14.74914 -14.07660 -13.95706 -13.58640 -13.23942 -12.99069 -12.91268 -12.55500 -12.29970 -12.11399 -11.93558 -11.89300 -11.55378 -11.39084 -11.21491 -11.01725 -10.95524 -10.58586 -10.56431 -10.43050 -10.15261 -10.04294 -9.81501 -9.71932 -9.48447 -9.45503 -8.72916 -8.22684 -7.98963 -6.54013 -5.60716 -3.02074 2.11886 3.32492 3.36452 3.51593 3.58554 3.62091 4.36335 4.64604 4.65337 4.72470 4.87188 5.04468 5.12454 5.16986 5.27273 5.46798 5.53141 5.56482 5.62323 5.66285 5.72659 5.76241 5.83367 5.93519 6.11469 6.16662 6.19792 6.27428 6.37475 6.41812 6.42989 6.56748 6.60585 6.63783 6.82053 6.91863 7.02986 7.54934 7.81765 7.83316 7.99151 8.45229 8.62678 8.92984 9.40901 10.05501 10.53110 11.47697 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.013051 B = 0.007119 C = 0.005222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2144.904816 B = 3932.455767 C = 5360.917971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.180 4.180 3 C 0.177 3.823 4 C -0.149 4.149 5 O -0.535 6.535 6 C -0.155 4.155 7 C 0.538 3.462 8 O -0.492 6.492 9 N -0.636 5.636 10 C 0.095 3.905 11 C -0.115 4.115 12 H 0.089 0.911 13 C -0.114 4.114 14 C 0.148 3.852 15 N -0.583 5.583 16 C -0.254 4.254 17 H 0.061 0.939 18 C 0.014 3.986 19 N -0.902 5.902 20 Si 0.899 3.101 21 H -0.292 1.292 22 H -0.286 1.286 23 H -0.282 1.282 24 C 0.168 3.832 25 C 0.119 3.881 26 H 0.069 0.931 27 H 0.104 0.896 28 H 0.097 0.903 29 H 0.114 0.886 30 H 0.061 0.939 31 H 0.055 0.945 32 H 0.104 0.896 33 H 0.364 0.636 34 H 0.094 0.906 35 H 0.084 0.916 36 H 0.074 0.926 37 H 0.068 0.932 38 H 0.054 0.946 39 H 0.059 0.941 40 H 0.055 0.945 41 H 0.018 0.982 42 H 0.252 0.748 43 H 0.028 0.972 44 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.126 -12.867 10.008 17.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.198 4.198 3 C 0.136 3.864 4 C -0.206 4.206 5 O -0.339 6.339 6 C -0.196 4.196 7 C 0.327 3.673 8 O -0.364 6.364 9 N -0.374 5.374 10 C -0.029 4.029 11 C -0.134 4.134 12 H 0.108 0.892 13 C -0.153 4.153 14 C 0.022 3.978 15 N -0.306 5.306 16 C -0.384 4.384 17 H 0.078 0.922 18 C -0.185 4.185 19 N -0.547 5.547 20 Si 0.729 3.271 21 H -0.218 1.218 22 H -0.213 1.213 23 H -0.209 1.209 24 C 0.042 3.958 25 C 0.015 3.985 26 H 0.086 0.914 27 H 0.122 0.878 28 H 0.115 0.885 29 H 0.132 0.868 30 H 0.080 0.920 31 H 0.074 0.926 32 H 0.122 0.878 33 H 0.210 0.790 34 H 0.112 0.888 35 H 0.103 0.897 36 H 0.092 0.908 37 H 0.086 0.914 38 H 0.072 0.928 39 H 0.078 0.922 40 H 0.073 0.927 41 H 0.036 0.964 42 H 0.062 0.938 43 H 0.046 0.954 44 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -7.145 -12.165 8.645 16.546 hybrid contribution -0.627 -0.439 -0.150 0.781 sum -7.772 -12.604 8.495 17.071 Atomic orbital electron populations 1.23825 0.96023 1.02173 1.00478 1.23677 0.96716 0.98983 1.00431 1.19881 0.87888 0.83654 0.94989 1.21965 0.98650 1.05288 0.94661 1.86788 1.49940 1.49029 1.48143 1.22290 0.99928 0.97664 0.99704 1.19656 0.78355 0.88111 0.81226 1.90768 1.62271 1.49803 1.33604 1.49531 1.43801 1.23111 1.20975 1.23270 0.94131 0.98131 0.87354 1.22767 0.94207 0.97510 0.98912 0.89239 1.21748 0.97514 0.98488 0.97578 1.20625 0.91398 0.92497 0.93317 1.43425 1.27125 1.57335 1.02684 1.19005 1.36218 1.01592 0.81564 0.92162 1.24888 1.01298 0.94672 0.97614 1.70000 1.47378 1.02349 1.34939 0.86427 0.77814 0.77032 0.85810 1.21751 1.21303 1.20856 1.20152 0.92233 0.90896 0.92519 1.22591 0.87926 0.90249 0.97725 0.91357 0.87753 0.88457 0.86809 0.92030 0.92598 0.87786 0.79026 0.88794 0.89724 0.90819 0.91359 0.92772 0.92187 0.92697 0.96422 0.93774 0.95430 0.88007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.90 13.93 29.01 0.40 -1.50 16 2 C -0.18 -2.05 8.77 -36.03 -0.32 -2.36 16 3 C 0.18 2.60 0.94 -91.77 -0.09 2.51 16 4 C -0.15 -2.59 8.50 37.16 0.32 -2.28 16 5 O -0.53 -8.56 10.85 -53.47 -0.58 -9.14 16 6 C -0.16 -2.18 4.79 -27.89 -0.13 -2.31 16 7 C 0.54 10.33 7.57 -10.98 -0.08 10.25 16 8 O -0.49 -11.98 12.20 -12.68 -0.15 -12.14 16 9 N -0.64 -11.32 3.33 -187.71 -0.63 -11.95 16 10 C 0.09 1.23 7.77 -11.53 -0.09 1.14 16 11 C -0.11 -1.73 4.57 -90.32 -0.41 -2.15 16 12 H 0.09 1.15 8.14 -51.93 -0.42 0.72 16 13 C -0.11 -1.87 5.68 -26.85 -0.15 -2.03 16 14 C 0.15 3.07 6.43 -4.17 -0.03 3.05 16 15 N -0.58 -14.94 3.03 -175.19 -0.53 -15.48 16 16 C -0.25 -7.31 9.52 -15.06 -0.14 -7.45 16 17 H 0.06 1.71 7.84 -52.49 -0.41 1.30 16 18 C 0.01 0.42 4.91 -17.43 -0.09 0.33 16 19 N -0.90 -27.74 11.04 55.49 0.61 -27.13 16 20 Si 0.90 23.66 29.58 -169.99 -5.03 18.63 16 21 H -0.29 -7.73 7.11 56.52 0.40 -7.33 16 22 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 23 H -0.28 -7.51 7.11 56.52 0.40 -7.10 16 24 C 0.17 4.21 4.59 -5.45 -0.03 4.18 16 25 C 0.12 2.28 4.03 -77.70 -0.31 1.97 16 26 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 27 H 0.10 1.06 6.41 -52.49 -0.34 0.72 16 28 H 0.10 0.81 8.06 -52.49 -0.42 0.38 16 29 H 0.11 1.13 8.06 -52.49 -0.42 0.70 16 30 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 32 H 0.10 2.32 5.51 -51.92 -0.29 2.04 16 33 H 0.36 4.30 8.05 45.56 0.37 4.66 16 34 H 0.09 1.19 8.14 -51.93 -0.42 0.76 16 35 H 0.08 0.97 8.14 -51.92 -0.42 0.55 16 36 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.07 0.77 8.04 -51.93 -0.42 0.35 16 38 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.06 1.08 7.68 -51.93 -0.40 0.68 16 40 H 0.05 1.13 7.87 -51.93 -0.41 0.72 16 41 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.25 7.61 8.31 -40.82 -0.34 7.27 16 43 H 0.03 0.75 7.99 -51.93 -0.42 0.34 16 44 H 0.10 3.00 5.01 -51.93 -0.26 2.74 16 LS Contribution 345.49 15.07 5.21 5.21 Total: -1.00 -34.99 345.49 -8.60 -43.59 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: -6.35 Total: 5.04 kcal Atomic # 6 Polarization: 4.52 SS G_CDS: -1.15 Total: 3.37 kcal Atomic # 7 Polarization: -54.01 SS G_CDS: -0.54 Total: -54.56 kcal Atomic # 8 Polarization: -20.55 SS G_CDS: -0.73 Total: -21.28 kcal Atomic # 14 Polarization: 23.66 SS G_CDS: -5.03 Total: 18.63 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -34.99 -8.60 -43.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001221516534.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.243 kcal (2) G-P(sol) polarization free energy of solvation -34.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.594 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds