Wall clock time and date at job start Tue Mar 31 2020 07:46:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50702 * 119.99782 * 2 1 4 4 C 1.53002 * 109.46947 * 240.00091 * 3 2 1 5 5 O 1.42904 * 109.47268 * 359.97438 * 3 2 1 6 6 C 1.52993 * 109.47309 * 120.00258 * 3 2 1 7 7 C 1.50702 * 109.47309 * 179.97438 * 6 3 2 8 8 O 1.21281 * 120.00178 * 359.97438 * 7 6 3 9 9 N 1.34778 * 119.99880 * 179.97438 * 7 6 3 10 10 C 1.47286 * 136.54575 * 0.02562 * 9 7 6 11 11 C 1.54078 * 87.60926 * 151.38172 * 10 9 7 12 12 H 1.09002 * 115.04528 * 141.62729 * 11 10 9 13 13 C 1.53066 * 111.39242 * 273.97325 * 11 10 9 14 14 C 1.52707 * 109.28308 * 142.28636 * 13 11 10 15 15 N 1.46536 * 108.49040 * 301.79793 * 14 13 11 16 16 C 1.36938 * 119.73427 * 236.40244 * 15 14 13 17 17 H 1.07998 * 120.00232 * 25.17257 * 16 15 14 18 18 C 1.38811 * 119.99688 * 205.17653 * 16 15 14 19 19 N 1.31618 * 120.00721 * 15.80116 * 18 16 15 20 20 Si 1.86810 * 119.99756 * 196.07540 * 18 16 15 21 21 H 1.48492 * 109.47189 * 179.72146 * 20 18 16 22 22 H 1.48494 * 109.47181 * 299.72736 * 20 18 16 23 23 H 1.48505 * 109.46855 * 59.72588 * 20 18 16 24 24 C 1.45697 * 120.53179 * 56.11788 * 15 14 13 25 25 C 1.46470 * 136.53881 * 179.97438 * 9 7 6 26 26 H 1.09002 * 111.43655 * 97.10547 * 25 9 7 27 27 H 1.08000 * 120.00136 * 0.02562 * 1 2 3 28 28 H 1.07998 * 119.99434 * 180.02562 * 1 2 3 29 29 H 1.07997 * 120.00179 * 180.02562 * 2 1 3 30 30 H 1.08997 * 109.47068 * 299.99639 * 4 3 2 31 31 H 1.08998 * 109.47292 * 60.00450 * 4 3 2 32 32 H 1.09009 * 109.47181 * 179.97438 * 4 3 2 33 33 H 0.96702 * 113.99272 * 60.00607 * 5 3 2 34 34 H 1.08997 * 109.47486 * 59.99883 * 6 3 2 35 35 H 1.09007 * 109.46952 * 299.99778 * 6 3 2 36 36 H 1.08996 * 113.52733 * 266.06611 * 10 9 7 37 37 H 1.08997 * 113.53029 * 36.69504 * 10 9 7 38 38 H 1.09000 * 109.51261 * 262.32261 * 13 11 10 39 39 H 1.08999 * 109.51616 * 22.43242 * 13 11 10 40 40 H 1.08995 * 109.62537 * 182.01269 * 14 13 11 41 41 H 1.09005 * 109.55654 * 61.53493 * 14 13 11 42 42 H 0.96996 * 120.00182 * 180.02562 * 19 18 16 43 43 H 1.09004 * 108.79044 * 81.16310 * 24 15 14 44 44 H 1.08995 * 108.79311 * 199.49614 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.9431 1.3862 -1.2493 5 8 1.1349 2.3913 -0.0006 6 6 2.9432 1.3862 1.2491 7 6 3.6971 2.6911 1.2488 8 8 3.5461 3.4785 0.3388 9 7 4.5392 2.9831 2.2599 10 6 4.9877 2.3284 3.5006 11 6 6.3145 3.0973 3.3504 12 1 6.7443 3.4625 4.2831 13 6 7.2981 2.3432 2.4521 14 6 8.0669 3.3451 1.5935 15 7 7.1029 4.1178 0.8055 16 6 7.2089 4.1462 -0.5594 17 1 7.6937 3.3338 -1.0804 18 6 6.6933 5.2191 -1.2735 19 7 6.3879 6.3380 -0.6512 20 14 6.4257 5.0723 -3.1164 21 1 5.8638 6.3441 -3.6378 22 1 7.7223 4.7934 -3.7843 23 1 5.4780 3.9627 -3.3922 24 6 6.0288 4.8512 1.4623 25 6 5.4223 4.0945 2.6206 26 1 4.9416 4.7727 3.3257 27 1 -0.5400 0.9353 -0.0004 28 1 -0.5399 -0.9353 0.0004 29 1 1.8501 -0.9353 -0.0004 30 1 3.6515 0.5578 -1.2492 31 1 2.3165 1.3285 -2.1392 32 1 3.4878 2.3305 -1.2495 33 1 0.5434 2.4034 0.7643 34 1 3.6515 0.5578 1.2492 35 1 2.3165 1.3285 2.1392 36 1 4.4126 2.6205 4.3792 37 1 5.0979 1.2480 3.4073 38 1 7.9972 1.7799 3.0702 39 1 6.7494 1.6580 1.8060 40 1 8.7437 2.8118 0.9261 41 1 8.6368 4.0154 2.2370 42 1 6.0272 7.0875 -1.1502 43 1 6.4239 5.7983 1.8298 44 1 5.2467 5.0576 0.7317 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001221516534.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:46:07 Heat of formation + Delta-G solvation = -13.892265 kcal Electronic energy + Delta-G solvation = -25734.950021 eV Core-core repulsion = 22268.454257 eV Total energy + Delta-G solvation = -3466.495764 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.89792 -40.22827 -38.24606 -37.00660 -34.02397 -33.94854 -32.28737 -31.90367 -30.80533 -28.89599 -28.08793 -25.63249 -24.59280 -23.45499 -22.58177 -21.05553 -20.58988 -19.44307 -18.47609 -17.86585 -17.33733 -17.31551 -16.68162 -16.37721 -16.09582 -15.78014 -15.50797 -15.15911 -14.79559 -14.45613 -14.42770 -13.90293 -13.80899 -13.50467 -13.24267 -13.15531 -13.13474 -12.77271 -12.66511 -12.60322 -12.48290 -12.25633 -12.22301 -12.01535 -11.95303 -11.65532 -11.46257 -11.13953 -11.00356 -10.59630 -10.36709 -10.09920 -9.38032 -8.66137 -7.85336 -5.27689 1.30648 1.32812 1.41973 1.44401 1.95859 2.09725 2.47955 3.30370 3.31367 3.48809 3.59078 3.74317 3.76061 3.96690 4.01151 4.08961 4.30562 4.40316 4.49078 4.55103 4.60020 4.64330 4.69376 4.73918 4.78884 4.82033 4.84757 4.93100 4.98755 5.08323 5.12102 5.17061 5.35014 5.39256 5.46338 5.57003 5.64298 5.73390 5.83156 5.84066 6.40024 6.87697 7.11744 7.20532 7.54980 7.97903 8.36265 9.19100 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.013051 B = 0.007119 C = 0.005222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2144.904816 B = 3932.455767 C = 5360.917971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.187 4.187 3 C 0.176 3.824 4 C -0.148 4.148 5 O -0.564 6.564 6 C -0.140 4.140 7 C 0.523 3.477 8 O -0.560 6.560 9 N -0.645 5.645 10 C 0.112 3.888 11 C -0.105 4.105 12 H 0.126 0.874 13 C -0.102 4.102 14 C 0.138 3.862 15 N -0.600 5.600 16 C -0.253 4.253 17 H 0.060 0.940 18 C -0.042 4.042 19 N -0.932 5.932 20 Si 0.950 3.050 21 H -0.297 1.297 22 H -0.266 1.266 23 H -0.292 1.292 24 C 0.183 3.817 25 C 0.103 3.897 26 H 0.082 0.918 27 H 0.099 0.901 28 H 0.123 0.877 29 H 0.135 0.865 30 H 0.078 0.922 31 H 0.050 0.950 32 H 0.048 0.952 33 H 0.379 0.621 34 H 0.115 0.885 35 H 0.120 0.880 36 H 0.110 0.890 37 H 0.099 0.901 38 H 0.100 0.900 39 H 0.045 0.955 40 H 0.050 0.950 41 H 0.023 0.977 42 H 0.243 0.757 43 H -0.012 1.012 44 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.584 -16.719 12.887 22.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.206 4.206 3 C 0.135 3.865 4 C -0.206 4.206 5 O -0.371 6.371 6 C -0.180 4.180 7 C 0.313 3.687 8 O -0.437 6.437 9 N -0.381 5.381 10 C -0.009 4.009 11 C -0.124 4.124 12 H 0.144 0.856 13 C -0.141 4.141 14 C 0.013 3.987 15 N -0.323 5.323 16 C -0.384 4.384 17 H 0.077 0.923 18 C -0.237 4.237 19 N -0.579 5.579 20 Si 0.779 3.221 21 H -0.223 1.223 22 H -0.191 1.191 23 H -0.219 1.219 24 C 0.056 3.944 25 C -0.002 4.002 26 H 0.100 0.900 27 H 0.117 0.883 28 H 0.141 0.859 29 H 0.153 0.847 30 H 0.097 0.903 31 H 0.069 0.931 32 H 0.067 0.933 33 H 0.228 0.772 34 H 0.134 0.866 35 H 0.138 0.862 36 H 0.128 0.872 37 H 0.117 0.883 38 H 0.118 0.882 39 H 0.064 0.936 40 H 0.069 0.931 41 H 0.041 0.959 42 H 0.052 0.948 43 H 0.006 0.994 44 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -7.569 -16.076 11.592 21.216 hybrid contribution -0.443 0.792 -1.038 1.379 sum -8.012 -15.284 10.554 20.228 Atomic orbital electron populations 1.24036 0.95682 1.03150 0.98116 1.23496 0.96952 0.97629 1.02479 1.19852 0.87844 0.85068 0.93710 1.21893 0.99143 1.02846 0.96670 1.86749 1.50662 1.50271 1.49405 1.22262 1.00031 0.94894 1.00815 1.20696 0.78219 0.89288 0.80463 1.90765 1.64506 1.52256 1.36209 1.49734 1.42835 1.23128 1.22429 1.23456 0.92082 0.99426 0.85982 1.22805 0.94785 0.95786 0.99016 0.85626 1.21618 0.97996 0.97130 0.97350 1.20886 0.91206 0.93014 0.93551 1.43664 1.28672 1.57770 1.02200 1.19304 1.34639 1.00802 0.83634 0.92276 1.25544 1.02306 0.94789 1.01065 1.70168 1.49109 1.02850 1.35782 0.85596 0.78087 0.76125 0.82255 1.22310 1.19134 1.21939 1.19735 0.90675 0.90778 0.93185 1.22568 0.90100 0.91710 0.95811 0.89979 0.88266 0.85934 0.84703 0.90329 0.93091 0.93331 0.77222 0.86637 0.86154 0.87176 0.88314 0.88200 0.93631 0.93128 0.95884 0.94817 0.99391 0.93328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.92 13.93 67.78 0.94 -1.98 16 2 C -0.19 -3.68 8.77 25.64 0.22 -3.46 16 3 C 0.18 4.97 0.94 -11.54 -0.01 4.96 16 4 C -0.15 -5.32 8.50 71.98 0.61 -4.71 16 5 O -0.56 -18.19 10.85 -131.55 -1.43 -19.62 16 6 C -0.14 -3.57 4.79 29.85 0.14 -3.43 16 7 C 0.52 20.00 7.57 87.66 0.66 20.66 16 8 O -0.56 -29.00 12.20 14.40 0.18 -28.82 16 9 N -0.64 -21.80 3.33 -866.17 -2.89 -24.69 16 10 C 0.11 2.29 7.77 81.10 0.63 2.93 16 11 C -0.11 -2.73 4.57 -10.60 -0.05 -2.78 16 12 H 0.13 2.47 8.14 -2.39 -0.02 2.45 16 13 C -0.10 -2.99 5.68 30.52 0.17 -2.81 16 14 C 0.14 5.62 6.43 86.28 0.56 6.17 16 15 N -0.60 -31.72 3.03 -708.18 -2.15 -33.86 16 16 C -0.25 -15.18 9.52 84.03 0.80 -14.38 16 17 H 0.06 3.47 7.84 -2.91 -0.02 3.45 16 18 C -0.04 -2.60 4.91 84.86 0.42 -2.18 16 19 N -0.93 -61.27 11.04 21.65 0.24 -61.03 16 20 Si 0.95 51.28 29.58 68.60 2.03 53.31 16 21 H -0.30 -16.11 7.11 99.48 0.71 -15.41 16 22 H -0.27 -13.31 7.11 99.48 0.71 -12.60 16 23 H -0.29 -16.08 7.11 99.48 0.71 -15.37 16 24 C 0.18 9.62 4.59 85.90 0.39 10.01 16 25 C 0.10 3.87 4.03 38.68 0.16 4.03 16 26 H 0.08 2.82 8.14 -2.39 -0.02 2.80 16 27 H 0.10 1.78 6.41 -2.91 -0.02 1.76 16 28 H 0.12 1.49 8.06 -2.91 -0.02 1.46 16 29 H 0.14 2.09 8.06 -2.91 -0.02 2.07 16 30 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 31 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 32 H 0.05 2.32 5.51 -2.38 -0.01 2.31 16 33 H 0.38 8.70 8.05 -74.06 -0.60 8.11 16 34 H 0.12 2.45 8.14 -2.39 -0.02 2.43 16 35 H 0.12 2.21 8.14 -2.38 -0.02 2.19 16 36 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.10 1.53 8.04 -2.39 -0.02 1.51 16 38 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 39 H 0.04 1.48 7.68 -2.39 -0.02 1.46 16 40 H 0.05 2.05 7.87 -2.39 -0.02 2.03 16 41 H 0.02 0.92 8.14 -2.38 -0.02 0.90 16 42 H 0.24 15.74 8.31 -92.71 -0.77 14.96 16 43 H -0.01 -0.68 7.99 -2.38 -0.02 -0.70 16 44 H 0.05 3.08 5.01 -2.39 -0.01 3.07 16 Total: -1.00 -87.03 345.49 2.02 -85.00 By element: Atomic # 1 Polarization: 16.29 SS G_CDS: 0.39 Total: 16.68 kcal Atomic # 6 Polarization: 7.38 SS G_CDS: 5.65 Total: 13.03 kcal Atomic # 7 Polarization: -114.78 SS G_CDS: -4.80 Total: -119.58 kcal Atomic # 8 Polarization: -47.19 SS G_CDS: -1.25 Total: -48.44 kcal Atomic # 14 Polarization: 51.28 SS G_CDS: 2.03 Total: 53.31 kcal Total: -87.03 2.02 -85.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001221516534.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.109 kcal (2) G-P(sol) polarization free energy of solvation -87.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds