Wall clock time and date at job start Tue Mar 31 2020 07:40:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50700 * 119.99682 * 2 1 4 4 C 1.52993 * 109.47191 * 125.00186 * 3 2 1 5 5 O 1.42897 * 109.47088 * 179.97438 * 4 3 2 6 6 C 1.42903 * 114.00077 * 179.97438 * 5 4 3 7 7 C 1.50702 * 109.47250 * 179.97438 * 6 5 4 8 8 O 1.21281 * 120.00178 * 359.97438 * 7 6 5 9 9 N 1.34778 * 119.99880 * 179.97438 * 7 6 5 10 10 C 1.47286 * 136.54575 * 0.02562 * 9 7 6 11 11 C 1.52788 * 87.32367 * 150.71243 * 10 9 7 12 12 H 1.09001 * 114.70638 * 142.41093 * 11 10 9 13 13 C 1.53061 * 111.38640 * 274.42608 * 11 10 9 14 14 C 1.53964 * 108.39823 * 144.15089 * 13 11 10 15 15 N 1.46536 * 107.57899 * 299.98694 * 14 13 11 16 16 C 1.36938 * 119.73427 * 237.77189 * 15 14 13 17 17 H 1.07994 * 120.00301 * 25.16694 * 16 15 14 18 18 C 1.38818 * 119.99816 * 205.17074 * 16 15 14 19 19 N 1.31613 * 120.00275 * 15.81469 * 18 16 15 20 20 Si 1.86799 * 119.99758 * 196.09272 * 18 16 15 21 21 H 1.48502 * 109.47209 * 269.72348 * 20 18 16 22 22 H 1.48499 * 109.47290 * 29.72240 * 20 18 16 23 23 H 1.48496 * 109.46979 * 149.72232 * 20 18 16 24 24 C 1.45697 * 120.53179 * 57.48733 * 15 14 13 25 25 C 1.46470 * 136.53881 * 179.97438 * 9 7 6 26 26 H 1.09002 * 111.43655 * 97.10547 * 25 9 7 27 27 H 1.08005 * 119.99719 * 180.02562 * 1 2 3 28 28 H 1.07991 * 120.00076 * 0.02562 * 1 2 3 29 29 H 1.08000 * 120.00246 * 179.97438 * 2 1 3 30 30 H 1.09000 * 109.47165 * 4.99474 * 3 2 1 31 31 H 1.09010 * 109.46860 * 245.00066 * 3 2 1 32 32 H 1.09000 * 109.47647 * 59.99584 * 4 3 2 33 33 H 1.09000 * 109.47073 * 299.99905 * 4 3 2 34 34 H 1.08997 * 109.47481 * 59.99857 * 6 5 4 35 35 H 1.09007 * 109.47016 * 299.99715 * 6 5 4 36 36 H 1.08996 * 113.52733 * 266.06611 * 10 9 7 37 37 H 1.08997 * 113.53029 * 36.69504 * 10 9 7 38 38 H 1.08997 * 109.51844 * 262.81926 * 13 11 10 39 39 H 1.08993 * 109.51835 * 22.92974 * 13 11 10 40 40 H 1.08995 * 108.93631 * 181.12678 * 14 13 11 41 41 H 1.09005 * 111.13975 * 60.09590 * 14 13 11 42 42 H 0.96996 * 120.00502 * 180.02562 * 19 18 16 43 43 H 1.09004 * 108.79044 * 81.16310 * 24 15 14 44 44 H 1.08995 * 108.79311 * 199.49614 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3332 1.1815 5 8 3.7498 2.5705 1.1812 6 6 4.6886 2.6998 2.2508 7 6 5.3815 4.0344 2.1526 8 8 5.0996 4.7994 1.2547 9 7 6.3145 4.3779 3.0625 10 6 6.9220 3.7634 4.2553 11 6 8.1827 4.5664 3.9388 12 1 8.7078 4.9531 4.8122 13 6 9.0761 3.8309 2.9370 14 6 9.7309 4.8738 2.0128 15 7 8.6553 5.5927 1.3247 16 6 8.6120 5.6023 -0.0440 17 1 9.0722 4.8020 -0.6045 18 6 7.9768 6.6408 -0.7111 19 7 7.6928 7.7565 -0.0733 20 14 7.5180 6.4518 -2.5119 21 1 8.6383 6.9303 -3.3611 22 1 7.2494 5.0214 -2.8069 23 1 6.3015 7.2533 -2.7996 24 6 7.6279 6.2922 2.0850 25 6 7.1830 5.5308 3.3115 26 1 6.7526 6.2003 4.0562 27 1 -0.5400 -0.9354 0.0004 28 1 -0.5400 0.9352 -0.0004 29 1 1.8501 -0.9353 0.0004 30 1 1.3585 2.1316 0.0895 31 1 2.6213 1.4026 -0.9315 32 1 3.7400 0.5067 1.0921 33 1 2.4772 1.2357 2.1129 34 1 5.4276 1.9014 2.1842 35 1 4.1647 2.6313 3.2043 36 1 6.4330 4.0464 5.1874 37 1 7.0676 2.6870 4.1639 38 1 9.8586 3.2937 3.4728 39 1 8.4758 3.1240 2.3643 40 1 10.3539 4.3577 1.2825 41 1 10.3377 5.5779 2.5823 42 1 7.2486 8.4820 -0.5392 43 1 8.0195 7.2608 2.3958 44 1 6.7635 6.4538 1.4411 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001222064103.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:40:36 Heat of formation + Delta-G solvation = 12.652084 kcal Electronic energy + Delta-G solvation = -24568.782791 eV Core-core repulsion = 21103.438077 eV Total energy + Delta-G solvation = -3465.344715 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.57448 -38.47386 -37.02487 -35.17174 -35.05333 -32.07132 -30.32189 -30.05642 -29.16712 -27.07194 -26.40771 -23.78991 -23.13476 -22.71182 -21.03404 -20.14129 -19.73485 -17.75676 -17.05112 -16.59613 -16.36458 -15.90609 -15.70388 -15.14741 -15.10046 -14.27597 -13.98868 -13.73072 -13.59097 -13.26127 -13.19141 -12.94524 -12.57592 -12.43841 -12.17292 -11.88565 -11.56528 -11.41192 -11.32219 -11.20507 -11.04146 -10.63292 -10.57691 -10.44941 -10.15869 -9.83938 -9.72992 -9.69117 -9.58082 -9.50649 -8.84243 -8.23685 -8.08534 -6.53494 -5.60081 -3.01259 1.99739 2.96393 3.22901 3.52439 3.61447 3.64446 3.93845 4.66564 4.71232 4.72972 4.81563 4.90523 5.04188 5.12978 5.16130 5.23875 5.28893 5.36808 5.45958 5.52283 5.55752 5.62555 5.65966 5.74339 5.79418 5.89296 5.92418 6.09746 6.16712 6.30320 6.37915 6.40933 6.51594 6.53449 6.61335 6.80843 7.02680 7.13266 7.53751 7.81525 7.99481 8.34349 8.63146 8.83026 9.41445 10.06091 10.53161 11.48429 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.012790 B = 0.004980 C = 0.003899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2188.655366 B = 5620.784959 C = 7180.154644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.150 4.150 3 C -0.095 4.095 4 C 0.066 3.934 5 O -0.361 6.361 6 C 0.056 3.944 7 C 0.538 3.462 8 O -0.494 6.494 9 N -0.636 5.636 10 C 0.094 3.906 11 C -0.113 4.113 12 H 0.091 0.909 13 C -0.113 4.113 14 C 0.147 3.853 15 N -0.585 5.585 16 C -0.254 4.254 17 H 0.061 0.939 18 C 0.013 3.987 19 N -0.903 5.903 20 Si 0.901 3.099 21 H -0.290 1.290 22 H -0.281 1.281 23 H -0.290 1.290 24 C 0.167 3.833 25 C 0.122 3.878 26 H 0.073 0.927 27 H 0.098 0.902 28 H 0.098 0.902 29 H 0.110 0.890 30 H 0.077 0.923 31 H 0.084 0.916 32 H 0.050 0.950 33 H 0.048 0.952 34 H 0.072 0.928 35 H 0.070 0.930 36 H 0.078 0.922 37 H 0.069 0.931 38 H 0.053 0.947 39 H 0.061 0.939 40 H 0.053 0.947 41 H 0.024 0.976 42 H 0.252 0.748 43 H 0.030 0.970 44 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.764 -14.560 10.509 19.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.168 4.168 3 C -0.133 4.133 4 C -0.011 4.011 5 O -0.279 6.279 6 C -0.024 4.024 7 C 0.325 3.675 8 O -0.366 6.366 9 N -0.375 5.375 10 C -0.030 4.030 11 C -0.133 4.133 12 H 0.109 0.891 13 C -0.153 4.153 14 C 0.021 3.979 15 N -0.307 5.307 16 C -0.383 4.383 17 H 0.079 0.921 18 C -0.186 4.186 19 N -0.548 5.548 20 Si 0.732 3.268 21 H -0.218 1.218 22 H -0.206 1.206 23 H -0.216 1.216 24 C 0.041 3.959 25 C 0.018 3.982 26 H 0.091 0.909 27 H 0.116 0.884 28 H 0.116 0.884 29 H 0.128 0.872 30 H 0.096 0.904 31 H 0.103 0.897 32 H 0.068 0.932 33 H 0.067 0.933 34 H 0.090 0.910 35 H 0.088 0.912 36 H 0.096 0.904 37 H 0.087 0.913 38 H 0.071 0.929 39 H 0.080 0.920 40 H 0.072 0.928 41 H 0.042 0.958 42 H 0.062 0.938 43 H 0.048 0.952 44 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -7.247 -13.893 9.601 18.377 hybrid contribution -0.406 -0.422 -0.522 0.785 sum -7.653 -14.315 9.079 18.599 Atomic orbital electron populations 1.23894 0.95890 1.01977 1.01070 1.22827 0.95998 0.98033 0.99957 1.20657 0.98014 0.95753 0.98843 1.22443 0.93926 0.86458 0.98233 1.88037 1.54271 1.36947 1.48648 1.22101 0.92583 0.96719 0.91042 1.19452 0.78535 0.87826 0.81723 1.90813 1.61418 1.52220 1.32123 1.49478 1.39247 1.22188 1.26595 1.23122 0.92531 0.98700 0.88649 1.22562 0.94546 0.97403 0.98742 0.89134 1.21987 0.97752 0.98443 0.97096 1.20903 0.90550 0.92487 0.94000 1.43459 1.23914 1.60945 1.02428 1.19058 1.34428 1.03448 0.81413 0.92094 1.24899 1.01325 0.94696 0.97664 1.70004 1.44946 1.03826 1.35979 0.86317 0.77643 0.77603 0.85275 1.21777 1.20637 1.21567 1.20168 0.94463 0.91235 0.90083 1.22690 0.86734 0.89391 0.99358 0.90907 0.88398 0.88392 0.87211 0.90442 0.89721 0.93195 0.93338 0.90965 0.91187 0.90404 0.91268 0.92858 0.92000 0.92800 0.95814 0.93839 0.95181 0.88070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.59 14.32 29.01 0.42 -1.18 16 2 C -0.15 -1.37 9.52 -36.03 -0.34 -1.72 16 3 C -0.10 -1.09 6.03 -27.89 -0.17 -1.26 16 4 C 0.07 0.80 5.92 37.15 0.22 1.02 16 5 O -0.36 -6.18 9.88 -55.14 -0.54 -6.73 16 6 C 0.06 0.86 6.27 36.01 0.23 1.08 16 7 C 0.54 11.06 8.09 -10.98 -0.09 10.97 16 8 O -0.49 -13.12 15.74 -14.35 -0.23 -13.35 16 9 N -0.64 -11.56 3.27 -191.22 -0.63 -12.18 16 10 C 0.09 1.19 7.76 -12.20 -0.09 1.10 16 11 C -0.11 -1.69 4.47 -91.01 -0.41 -2.10 16 12 H 0.09 1.13 8.14 -51.93 -0.42 0.70 16 13 C -0.11 -1.87 5.72 -26.20 -0.15 -2.01 16 14 C 0.15 3.06 6.49 -3.52 -0.02 3.03 16 15 N -0.59 -15.20 3.00 -174.42 -0.52 -15.72 16 16 C -0.25 -7.44 9.52 -15.06 -0.14 -7.58 16 17 H 0.06 1.76 7.84 -52.49 -0.41 1.35 16 18 C 0.01 0.39 4.91 -17.43 -0.09 0.30 16 19 N -0.90 -28.03 11.04 55.49 0.61 -27.41 16 20 Si 0.90 24.12 29.58 -169.99 -5.03 19.09 16 21 H -0.29 -7.53 7.11 56.52 0.40 -7.12 16 22 H -0.28 -7.52 7.11 56.52 0.40 -7.11 16 23 H -0.29 -7.87 7.11 56.52 0.40 -7.47 16 24 C 0.17 4.21 4.60 -5.45 -0.03 4.19 16 25 C 0.12 2.34 4.09 -77.70 -0.32 2.02 16 26 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 27 H 0.10 0.66 8.06 -52.48 -0.42 0.24 16 28 H 0.10 0.80 7.84 -52.49 -0.41 0.39 16 29 H 0.11 0.86 8.06 -52.49 -0.42 0.44 16 30 H 0.08 0.92 7.79 -51.93 -0.40 0.52 16 31 H 0.08 1.04 8.14 -51.92 -0.42 0.62 16 32 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.07 0.85 8.14 -51.92 -0.42 0.43 16 36 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.07 0.75 8.01 -51.93 -0.42 0.34 16 38 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.06 1.12 7.64 -51.93 -0.40 0.72 16 40 H 0.05 1.11 7.87 -51.93 -0.41 0.70 16 41 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.25 7.63 8.31 -40.82 -0.34 7.29 16 43 H 0.03 0.82 7.99 -51.93 -0.42 0.40 16 44 H 0.10 3.03 5.01 -51.93 -0.26 2.77 16 LS Contribution 357.38 15.07 5.39 5.39 Total: -1.00 -36.31 357.38 -9.27 -45.57 By element: Atomic # 1 Polarization: 4.81 SS G_CDS: -7.33 Total: -2.52 kcal Atomic # 6 Polarization: 8.84 SS G_CDS: -0.98 Total: 7.86 kcal Atomic # 7 Polarization: -54.78 SS G_CDS: -0.54 Total: -55.31 kcal Atomic # 8 Polarization: -19.30 SS G_CDS: -0.77 Total: -20.07 kcal Atomic # 14 Polarization: 24.12 SS G_CDS: -5.03 Total: 19.09 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -36.31 -9.27 -45.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222064103.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.225 kcal (2) G-P(sol) polarization free energy of solvation -36.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.573 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds