Wall clock time and date at job start Tue Mar 31 2020 07:40:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50700 * 119.99682 * 2 1 4 4 C 1.52993 * 109.47191 * 125.00186 * 3 2 1 5 5 O 1.42897 * 109.47088 * 179.97438 * 4 3 2 6 6 C 1.42903 * 114.00077 * 179.97438 * 5 4 3 7 7 C 1.50702 * 109.47250 * 179.97438 * 6 5 4 8 8 O 1.21281 * 120.00178 * 359.97438 * 7 6 5 9 9 N 1.34778 * 119.99880 * 179.97438 * 7 6 5 10 10 C 1.47286 * 136.54575 * 0.02562 * 9 7 6 11 11 C 1.52788 * 87.32367 * 150.71243 * 10 9 7 12 12 H 1.09001 * 114.70638 * 142.41093 * 11 10 9 13 13 C 1.53061 * 111.38640 * 274.42608 * 11 10 9 14 14 C 1.53964 * 108.39823 * 144.15089 * 13 11 10 15 15 N 1.46536 * 107.57899 * 299.98694 * 14 13 11 16 16 C 1.36938 * 119.73427 * 237.77189 * 15 14 13 17 17 H 1.07994 * 120.00301 * 25.16694 * 16 15 14 18 18 C 1.38818 * 119.99816 * 205.17074 * 16 15 14 19 19 N 1.31613 * 120.00275 * 15.81469 * 18 16 15 20 20 Si 1.86799 * 119.99758 * 196.09272 * 18 16 15 21 21 H 1.48502 * 109.47209 * 269.72348 * 20 18 16 22 22 H 1.48499 * 109.47290 * 29.72240 * 20 18 16 23 23 H 1.48496 * 109.46979 * 149.72232 * 20 18 16 24 24 C 1.45697 * 120.53179 * 57.48733 * 15 14 13 25 25 C 1.46470 * 136.53881 * 179.97438 * 9 7 6 26 26 H 1.09002 * 111.43655 * 97.10547 * 25 9 7 27 27 H 1.08005 * 119.99719 * 180.02562 * 1 2 3 28 28 H 1.07991 * 120.00076 * 0.02562 * 1 2 3 29 29 H 1.08000 * 120.00246 * 179.97438 * 2 1 3 30 30 H 1.09000 * 109.47165 * 4.99474 * 3 2 1 31 31 H 1.09010 * 109.46860 * 245.00066 * 3 2 1 32 32 H 1.09000 * 109.47647 * 59.99584 * 4 3 2 33 33 H 1.09000 * 109.47073 * 299.99905 * 4 3 2 34 34 H 1.08997 * 109.47481 * 59.99857 * 6 5 4 35 35 H 1.09007 * 109.47016 * 299.99715 * 6 5 4 36 36 H 1.08996 * 113.52733 * 266.06611 * 10 9 7 37 37 H 1.08997 * 113.53029 * 36.69504 * 10 9 7 38 38 H 1.08997 * 109.51844 * 262.81926 * 13 11 10 39 39 H 1.08993 * 109.51835 * 22.92974 * 13 11 10 40 40 H 1.08995 * 108.93631 * 181.12678 * 14 13 11 41 41 H 1.09005 * 111.13975 * 60.09590 * 14 13 11 42 42 H 0.96996 * 120.00502 * 180.02562 * 19 18 16 43 43 H 1.09004 * 108.79044 * 81.16310 * 24 15 14 44 44 H 1.08995 * 108.79311 * 199.49614 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3332 1.1815 5 8 3.7498 2.5705 1.1812 6 6 4.6886 2.6998 2.2508 7 6 5.3815 4.0344 2.1526 8 8 5.0996 4.7994 1.2547 9 7 6.3145 4.3779 3.0625 10 6 6.9220 3.7634 4.2553 11 6 8.1827 4.5664 3.9388 12 1 8.7078 4.9531 4.8122 13 6 9.0761 3.8309 2.9370 14 6 9.7309 4.8738 2.0128 15 7 8.6553 5.5927 1.3247 16 6 8.6120 5.6023 -0.0440 17 1 9.0722 4.8020 -0.6045 18 6 7.9768 6.6408 -0.7111 19 7 7.6928 7.7565 -0.0733 20 14 7.5180 6.4518 -2.5119 21 1 8.6383 6.9303 -3.3611 22 1 7.2494 5.0214 -2.8069 23 1 6.3015 7.2533 -2.7996 24 6 7.6279 6.2922 2.0850 25 6 7.1830 5.5308 3.3115 26 1 6.7526 6.2003 4.0562 27 1 -0.5400 -0.9354 0.0004 28 1 -0.5400 0.9352 -0.0004 29 1 1.8501 -0.9353 0.0004 30 1 1.3585 2.1316 0.0895 31 1 2.6213 1.4026 -0.9315 32 1 3.7400 0.5067 1.0921 33 1 2.4772 1.2357 2.1129 34 1 5.4276 1.9014 2.1842 35 1 4.1647 2.6313 3.2043 36 1 6.4330 4.0464 5.1874 37 1 7.0676 2.6870 4.1639 38 1 9.8586 3.2937 3.4728 39 1 8.4758 3.1240 2.3643 40 1 10.3539 4.3577 1.2825 41 1 10.3377 5.5779 2.5823 42 1 7.2486 8.4820 -0.5392 43 1 8.0195 7.2608 2.3958 44 1 6.7635 6.4538 1.4411 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001222064103.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:40:35 Heat of formation + Delta-G solvation = -12.347376 kcal Electronic energy + Delta-G solvation = -24569.866849 eV Core-core repulsion = 21103.438077 eV Total energy + Delta-G solvation = -3466.428773 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.96538 -39.75642 -38.41365 -37.05167 -35.90262 -33.95700 -31.96338 -31.49551 -30.32810 -28.76008 -27.67831 -25.64852 -24.36530 -23.92992 -22.59161 -21.37244 -20.68588 -19.50018 -18.58009 -17.74209 -17.65093 -17.41599 -17.13559 -16.68002 -16.18327 -15.92319 -15.64758 -15.20470 -14.95505 -14.66164 -14.48213 -14.29999 -14.06122 -13.91668 -13.49472 -13.35485 -13.14475 -12.78627 -12.65917 -12.53956 -12.34843 -12.22226 -12.16905 -12.01456 -11.99010 -11.73816 -11.48936 -11.07828 -10.72384 -10.64245 -10.33322 -10.26869 -9.51195 -8.66918 -7.86600 -5.28863 1.30687 1.32097 1.40306 1.45559 1.73094 1.76265 2.47345 2.87371 3.29905 3.48521 3.57254 3.73628 3.95351 3.97833 4.07019 4.14670 4.22239 4.25788 4.28901 4.42624 4.43258 4.50263 4.53956 4.61784 4.68875 4.78247 4.85246 4.85630 4.95903 4.99488 5.06991 5.08798 5.14563 5.34786 5.42991 5.56159 5.69058 5.71306 5.81554 5.83723 6.13532 6.38996 6.96844 7.19112 7.36115 7.97152 8.34664 9.17761 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.012790 B = 0.004980 C = 0.003899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2188.655366 B = 5620.784959 C = 7180.154644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.158 4.158 3 C -0.097 4.097 4 C 0.064 3.936 5 O -0.407 6.407 6 C 0.066 3.934 7 C 0.520 3.480 8 O -0.577 6.577 9 N -0.641 5.641 10 C 0.110 3.890 11 C -0.102 4.102 12 H 0.132 0.868 13 C -0.102 4.102 14 C 0.137 3.863 15 N -0.603 5.603 16 C -0.256 4.256 17 H 0.059 0.941 18 C -0.044 4.044 19 N -0.931 5.931 20 Si 0.952 3.048 21 H -0.272 1.272 22 H -0.282 1.282 23 H -0.301 1.301 24 C 0.180 3.820 25 C 0.105 3.895 26 H 0.092 0.908 27 H 0.119 0.881 28 H 0.094 0.906 29 H 0.127 0.873 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.068 0.932 33 H 0.071 0.929 34 H 0.098 0.902 35 H 0.111 0.889 36 H 0.119 0.881 37 H 0.102 0.898 38 H 0.100 0.900 39 H 0.044 0.956 40 H 0.048 0.952 41 H 0.032 0.968 42 H 0.243 0.757 43 H -0.006 1.006 44 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.439 -18.165 13.578 23.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.176 4.176 3 C -0.135 4.135 4 C -0.012 4.012 5 O -0.326 6.326 6 C -0.013 4.013 7 C 0.310 3.690 8 O -0.456 6.456 9 N -0.378 5.378 10 C -0.011 4.011 11 C -0.121 4.121 12 H 0.149 0.851 13 C -0.141 4.141 14 C 0.012 3.988 15 N -0.326 5.326 16 C -0.387 4.387 17 H 0.077 0.923 18 C -0.239 4.239 19 N -0.578 5.578 20 Si 0.782 3.218 21 H -0.198 1.198 22 H -0.208 1.208 23 H -0.228 1.228 24 C 0.053 3.947 25 C 0.000 4.000 26 H 0.110 0.890 27 H 0.137 0.863 28 H 0.112 0.888 29 H 0.145 0.855 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.089 0.911 34 H 0.116 0.884 35 H 0.128 0.872 36 H 0.137 0.863 37 H 0.120 0.880 38 H 0.119 0.881 39 H 0.063 0.937 40 H 0.066 0.934 41 H 0.050 0.950 42 H 0.052 0.948 43 H 0.012 0.988 44 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -6.868 -17.563 12.742 22.760 hybrid contribution -0.457 0.703 -1.446 1.671 sum -7.325 -16.860 11.296 21.576 Atomic orbital electron populations 1.24089 0.95738 1.02818 0.99550 1.22791 0.96216 0.97319 1.01264 1.20662 0.97830 0.96871 0.98117 1.22670 0.94177 0.85117 0.99257 1.88000 1.55158 1.39577 1.49868 1.22123 0.93050 0.93784 0.92308 1.20587 0.78436 0.89127 0.80894 1.90776 1.64241 1.54974 1.35598 1.49680 1.37962 1.22350 1.27810 1.23381 0.89905 1.00166 0.87606 1.22592 0.94863 0.95757 0.98861 0.85067 1.21853 0.98810 0.96898 0.96573 1.21185 0.89673 0.93268 0.94672 1.43707 1.25809 1.61363 1.01721 1.19361 1.33131 1.02634 0.83579 0.92346 1.25573 1.02385 0.94877 1.01087 1.70164 1.46306 1.04391 1.36964 0.85494 0.77286 0.77052 0.81991 1.19825 1.20764 1.22777 1.19768 0.92143 0.91264 0.91517 1.22731 0.89597 0.90785 0.96849 0.89022 0.86325 0.88811 0.85482 0.91821 0.91624 0.91359 0.91125 0.88404 0.87158 0.86341 0.88016 0.88118 0.93678 0.93372 0.94972 0.94759 0.98793 0.93660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.75 14.32 67.78 0.97 -1.78 16 2 C -0.16 -2.64 9.52 25.64 0.24 -2.39 16 3 C -0.10 -2.22 6.03 29.85 0.18 -2.04 16 4 C 0.06 1.44 5.92 71.98 0.43 1.86 16 5 O -0.41 -13.83 9.88 -129.95 -1.28 -15.11 16 6 C 0.07 1.90 6.27 71.24 0.45 2.34 16 7 C 0.52 21.40 8.09 87.66 0.71 22.11 16 8 O -0.58 -32.61 15.74 16.00 0.25 -32.36 16 9 N -0.64 -22.03 3.27 -877.29 -2.87 -24.90 16 10 C 0.11 2.16 7.76 80.66 0.63 2.78 16 11 C -0.10 -2.56 4.47 -11.03 -0.05 -2.61 16 12 H 0.13 2.38 8.14 -2.39 -0.02 2.36 16 13 C -0.10 -2.97 5.72 30.94 0.18 -2.79 16 14 C 0.14 5.53 6.49 86.70 0.56 6.09 16 15 N -0.60 -32.16 3.00 -705.73 -2.12 -34.28 16 16 C -0.26 -15.62 9.52 84.03 0.80 -14.82 16 17 H 0.06 3.49 7.84 -2.91 -0.02 3.47 16 18 C -0.04 -2.77 4.91 84.86 0.42 -2.36 16 19 N -0.93 -61.53 11.04 21.65 0.24 -61.29 16 20 Si 0.95 52.01 29.58 68.60 2.03 54.03 16 21 H -0.27 -13.87 7.11 99.48 0.71 -13.17 16 22 H -0.28 -15.24 7.11 99.48 0.71 -14.54 16 23 H -0.30 -16.82 7.11 99.48 0.71 -16.12 16 24 C 0.18 9.48 4.60 85.90 0.39 9.88 16 25 C 0.10 3.89 4.09 38.68 0.16 4.05 16 26 H 0.09 3.03 8.14 -2.39 -0.02 3.01 16 27 H 0.12 1.27 8.06 -2.91 -0.02 1.25 16 28 H 0.09 1.45 7.84 -2.91 -0.02 1.43 16 29 H 0.13 1.67 8.06 -2.91 -0.02 1.65 16 30 H 0.06 1.57 7.79 -2.39 -0.02 1.55 16 31 H 0.07 1.70 8.14 -2.38 -0.02 1.68 16 32 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.10 2.25 8.14 -2.39 -0.02 2.23 16 35 H 0.11 2.21 8.14 -2.38 -0.02 2.19 16 36 H 0.12 1.52 8.14 -2.39 -0.02 1.50 16 37 H 0.10 1.45 8.01 -2.39 -0.02 1.43 16 38 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 39 H 0.04 1.47 7.64 -2.39 -0.02 1.45 16 40 H 0.05 1.95 7.87 -2.39 -0.02 1.93 16 41 H 0.03 1.25 8.14 -2.38 -0.02 1.23 16 42 H 0.24 15.77 8.31 -92.71 -0.77 15.00 16 43 H -0.01 -0.33 7.99 -2.38 -0.02 -0.35 16 44 H 0.04 2.91 5.01 -2.39 -0.01 2.90 16 Total: -1.00 -90.20 357.38 3.27 -86.94 By element: Atomic # 1 Polarization: 5.69 SS G_CDS: 0.96 Total: 6.65 kcal Atomic # 6 Polarization: 14.26 SS G_CDS: 6.06 Total: 20.33 kcal Atomic # 7 Polarization: -115.72 SS G_CDS: -4.75 Total: -120.47 kcal Atomic # 8 Polarization: -46.44 SS G_CDS: -1.03 Total: -47.47 kcal Atomic # 14 Polarization: 52.01 SS G_CDS: 2.03 Total: 54.03 kcal Total: -90.20 3.27 -86.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222064103.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.590 kcal (2) G-P(sol) polarization free energy of solvation -90.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds