Wall clock time and date at job start Tue Mar 31 2020 06:57:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47152 * 2 1 4 4 C 1.53001 * 109.47156 * 240.00203 * 2 1 3 5 5 C 1.50697 * 109.47257 * 120.00329 * 2 1 3 6 6 C 1.34334 * 126.44761 * 59.99968 * 5 2 1 7 7 N 1.34474 * 107.67097 * 180.02562 * 6 5 2 8 8 C 1.30254 * 108.70431 * 359.97438 * 7 6 5 9 9 C 1.50693 * 125.62442 * 179.97438 * 8 7 6 10 10 O 1.42908 * 109.47081 * 90.02483 * 9 8 7 11 11 C 1.42900 * 113.99997 * 180.02562 * 10 9 8 12 12 C 1.53514 * 114.16934 * 150.00256 * 11 10 9 13 13 N 1.47483 * 87.92777 * 87.81254 * 12 11 10 14 14 C 1.46903 * 110.99717 * 138.70421 * 13 12 11 15 15 C 1.50694 * 109.47066 * 169.99804 * 14 13 12 16 16 H 1.08000 * 120.00563 * 359.97438 * 15 14 13 17 17 C 1.37885 * 119.99902 * 180.02562 * 15 14 13 18 18 N 1.31516 * 119.99913 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99766 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.46985 * 179.97438 * 19 17 15 21 21 H 1.48494 * 109.47276 * 299.99832 * 19 17 15 22 22 H 1.48498 * 109.47150 * 60.00043 * 19 17 15 23 23 C 1.47480 * 87.83900 * 27.00973 * 13 12 11 24 24 O 1.33971 * 108.75839 * 0.23313 * 8 7 6 25 25 H 1.08999 * 109.46912 * 299.99771 * 1 2 3 26 26 H 1.08995 * 109.47336 * 59.99912 * 1 2 3 27 27 H 1.09002 * 109.46904 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47327 * 179.97438 * 3 2 1 29 29 H 1.08995 * 109.47071 * 300.00250 * 3 2 1 30 30 H 1.08999 * 109.47025 * 60.00298 * 3 2 1 31 31 H 1.09007 * 109.46941 * 300.00196 * 4 2 1 32 32 H 1.08995 * 109.47093 * 59.99735 * 4 2 1 33 33 H 1.08997 * 109.47508 * 180.02562 * 4 2 1 34 34 H 1.08003 * 126.15946 * 359.97438 * 6 5 2 35 35 H 1.09003 * 109.47110 * 330.03295 * 9 8 7 36 36 H 1.08996 * 109.47699 * 210.02681 * 9 8 7 37 37 H 1.09004 * 113.25466 * 17.04971 * 11 10 9 38 38 H 1.09000 * 113.47331 * 333.04932 * 12 11 10 39 39 H 1.08995 * 113.52785 * 202.58522 * 12 11 10 40 40 H 1.09007 * 109.47052 * 49.99488 * 14 13 12 41 41 H 1.09003 * 109.46808 * 290.00181 * 14 13 12 42 42 H 0.97001 * 119.99646 * 179.97438 * 18 17 15 43 43 H 1.09004 * 113.47132 * 87.75237 * 23 13 12 44 44 H 1.09000 * 113.47538 * 218.21976 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 2.0324 -0.7105 1.2304 6 6 1.7891 -1.9872 1.5700 7 7 2.4171 -2.2265 2.7348 8 6 3.0307 -1.1404 3.1094 9 6 3.8523 -0.9843 4.3629 10 8 5.2126 -1.3241 4.0863 11 6 6.0813 -1.2097 5.2151 12 6 7.2669 -2.1849 5.1972 13 7 8.0162 -1.1758 4.4256 14 6 9.4070 -1.0845 4.8896 15 6 10.2013 -0.2345 3.9317 16 1 9.7212 0.1946 3.0647 17 6 11.5415 -0.0056 4.1616 18 7 12.1263 -0.5285 5.2171 19 14 12.5262 1.0474 2.9737 20 1 13.9322 1.1398 3.4428 21 1 12.4940 0.4318 1.6228 22 1 11.9352 2.4083 2.9118 23 6 7.1770 -0.1451 5.0649 24 8 2.8063 -0.1831 2.1993 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9563 -0.8899 30 1 1.6768 1.9563 0.8900 31 1 1.6767 -1.7489 -1.2493 32 1 1.6767 -0.2074 -2.1392 33 1 3.1300 -0.7216 -1.2491 34 1 1.1953 -2.6937 1.0090 35 1 3.4630 -1.6455 5.1372 36 1 3.7985 0.0487 4.7064 37 1 5.5491 -1.1715 6.1656 38 1 7.0684 -3.0994 4.6384 39 1 7.6872 -2.3769 6.1843 40 1 9.8412 -2.0833 4.9350 41 1 9.4303 -0.6328 5.8814 42 1 13.0692 -0.3677 5.3785 43 1 7.5730 0.2078 6.0172 44 1 6.9026 0.6689 4.3940 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001223417198.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:59 Heat of formation + Delta-G solvation = 12.671028 kcal Electronic energy + Delta-G solvation = -23290.220382 eV Core-core repulsion = 19824.876489 eV Total energy + Delta-G solvation = -3465.343893 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.47780 -39.61788 -37.43625 -36.60341 -34.81828 -32.83120 -30.74888 -29.03501 -27.75474 -27.68897 -26.59760 -25.42577 -24.96876 -22.92394 -21.78990 -21.57432 -19.88443 -19.50959 -17.40140 -16.97042 -16.42348 -16.08940 -15.69247 -15.57594 -14.79457 -14.72061 -14.39291 -14.26943 -13.84980 -13.72197 -13.58686 -13.30829 -12.74350 -12.60874 -12.27690 -12.13945 -12.06582 -11.90362 -11.83686 -11.43470 -11.39563 -11.30862 -11.21809 -11.07154 -10.77090 -10.54975 -10.51586 -10.22299 -9.65716 -9.30040 -9.22848 -8.85357 -8.40147 -7.77821 -6.00945 -4.01624 1.24581 2.35490 2.55689 3.36086 3.39055 3.43426 3.57894 4.13791 4.26341 4.44397 4.45715 4.51088 4.70736 4.83010 4.86531 4.97680 5.09703 5.16140 5.19796 5.26356 5.29201 5.34279 5.37090 5.44319 5.47216 5.48864 5.64484 5.69574 5.81310 5.88188 5.89706 5.96967 6.00442 6.15246 6.16282 6.25455 6.38794 6.69800 7.17069 7.29822 7.63283 7.69786 7.90319 8.14682 8.50514 9.06025 9.62244 11.10199 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.018215 B = 0.002967 C = 0.002659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1536.862563 B = 9436.312834 C =10528.142807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.018 3.982 3 C -0.146 4.146 4 C -0.141 4.141 5 C -0.028 4.028 6 C -0.042 4.042 7 N -0.462 5.462 8 C 0.193 3.807 9 C 0.158 3.842 10 O -0.343 6.343 11 C 0.055 3.945 12 C -0.005 4.005 13 N -0.457 5.457 14 C 0.156 3.844 15 C -0.503 4.503 16 H 0.063 0.937 17 C 0.053 3.947 18 N -0.902 5.902 19 Si 0.900 3.100 20 H -0.288 1.288 21 H -0.276 1.276 22 H -0.277 1.277 23 C -0.008 4.008 24 O -0.188 6.188 25 H 0.060 0.940 26 H 0.069 0.931 27 H 0.062 0.938 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.060 0.940 31 H 0.062 0.938 32 H 0.070 0.930 33 H 0.063 0.937 34 H 0.181 0.819 35 H 0.093 0.907 36 H 0.079 0.921 37 H 0.078 0.922 38 H 0.082 0.918 39 H 0.073 0.927 40 H 0.029 0.971 41 H 0.003 0.997 42 H 0.261 0.739 43 H 0.073 0.927 44 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.287 1.203 -6.010 26.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.017 3.983 3 C -0.204 4.204 4 C -0.199 4.199 5 C -0.081 4.081 6 C -0.181 4.181 7 N -0.193 5.193 8 C -0.014 4.014 9 C 0.081 3.919 10 O -0.260 6.260 11 C -0.003 4.003 12 C -0.135 4.135 13 N -0.180 5.180 14 C 0.030 3.970 15 C -0.542 4.542 16 H 0.081 0.919 17 C -0.148 4.148 18 N -0.542 5.542 19 Si 0.728 3.272 20 H -0.214 1.214 21 H -0.201 1.201 22 H -0.203 1.203 23 C -0.138 4.138 24 O -0.074 6.074 25 H 0.079 0.921 26 H 0.088 0.912 27 H 0.081 0.919 28 H 0.083 0.917 29 H 0.084 0.916 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.089 0.911 33 H 0.082 0.918 34 H 0.198 0.802 35 H 0.111 0.889 36 H 0.097 0.903 37 H 0.096 0.904 38 H 0.101 0.899 39 H 0.091 0.909 40 H 0.047 0.953 41 H 0.021 0.979 42 H 0.071 0.929 43 H 0.091 0.909 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -24.888 0.583 -6.470 25.722 hybrid contribution 0.741 1.189 0.155 1.409 sum -24.147 1.773 -6.315 25.022 Atomic orbital electron populations 1.21932 0.92305 1.02722 1.02690 1.19148 0.95718 0.95383 0.88032 1.21886 1.02175 0.93824 1.02469 1.21944 1.02129 1.00416 0.95376 1.23437 0.97708 0.94632 0.92364 1.22972 1.04559 0.95439 0.95117 1.70421 1.10645 1.25776 1.12460 1.25683 0.99843 0.82046 0.93779 1.20521 0.82286 1.01731 0.87401 1.88074 1.15461 1.88312 1.34181 1.23378 0.90034 0.99249 0.87653 1.24039 0.92642 0.98188 0.98609 1.69060 1.04231 1.01334 1.43338 1.20293 0.84197 0.97669 0.94824 1.21080 0.93777 1.30124 1.09196 0.91923 1.25008 0.97764 0.96324 0.95660 1.69948 1.11620 1.45195 1.27395 0.86529 0.78694 0.80735 0.81284 1.21351 1.20135 1.20263 1.24245 0.93398 0.96907 0.99206 1.84404 1.53652 1.41217 1.28114 0.92138 0.91155 0.91880 0.91687 0.91555 0.92072 0.91868 0.91134 0.91759 0.80171 0.88906 0.90326 0.90434 0.89935 0.90879 0.95295 0.97915 0.92898 0.90906 0.90198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.86 8.35 37.16 0.31 -0.55 16 2 C 0.02 0.15 0.93 -155.66 -0.15 0.00 16 3 C -0.15 -1.22 8.06 37.16 0.30 -0.92 16 4 C -0.14 -1.04 8.35 37.16 0.31 -0.73 16 5 C -0.03 -0.32 5.70 -35.69 -0.20 -0.53 16 6 C -0.04 -0.50 11.24 -17.77 -0.20 -0.70 16 7 N -0.46 -6.82 11.29 -11.10 -0.13 -6.95 16 8 C 0.19 2.78 7.97 -12.95 -0.10 2.67 16 9 C 0.16 1.99 6.40 36.00 0.23 2.22 16 10 O -0.34 -5.72 10.38 -35.23 -0.37 -6.08 16 11 C 0.06 0.86 4.65 -26.20 -0.12 0.74 16 12 C -0.01 -0.10 7.52 -7.53 -0.06 -0.15 16 13 N -0.46 -10.50 6.32 -246.08 -1.55 -12.05 16 14 C 0.16 4.20 4.57 -4.98 -0.02 4.17 16 15 C -0.50 -14.82 9.39 -34.44 -0.32 -15.14 16 16 H 0.06 1.86 7.81 -52.49 -0.41 1.45 16 17 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 18 N -0.90 -27.28 13.29 55.43 0.74 -26.54 16 19 Si 0.90 22.29 29.54 -169.99 -5.02 17.27 16 20 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 21 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 22 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 23 C -0.01 -0.15 7.56 -7.54 -0.06 -0.21 16 24 O -0.19 -2.64 10.24 5.34 0.05 -2.58 16 25 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 26 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 27 H 0.06 0.35 8.02 -51.93 -0.42 -0.07 16 28 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.42 8.02 -51.92 -0.42 0.00 16 32 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 34 H 0.18 1.62 8.06 -52.48 -0.42 1.20 16 35 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 36 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.08 0.92 7.88 -51.93 -0.41 0.51 16 38 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 39 H 0.07 1.25 7.91 -51.93 -0.41 0.84 16 40 H 0.03 0.83 8.08 -51.92 -0.42 0.41 16 41 H 0.00 0.08 7.30 -51.93 -0.38 -0.30 16 42 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 43 H 0.07 1.34 7.42 -51.93 -0.39 0.95 16 44 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 LS Contribution 366.90 15.07 5.53 5.53 Total: -1.00 -34.42 366.90 -8.38 -42.80 By element: Atomic # 1 Polarization: 3.72 SS G_CDS: -7.45 Total: -3.73 kcal Atomic # 6 Polarization: -7.47 SS G_CDS: -0.18 Total: -7.65 kcal Atomic # 7 Polarization: -44.61 SS G_CDS: -0.94 Total: -45.55 kcal Atomic # 8 Polarization: -8.36 SS G_CDS: -0.31 Total: -8.67 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -34.42 -8.38 -42.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223417198.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.467 kcal (2) G-P(sol) polarization free energy of solvation -34.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.796 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds