Wall clock time and date at job start Tue Mar 31 2020 06:57:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47152 * 2 1 4 4 C 1.53001 * 109.47156 * 240.00203 * 2 1 3 5 5 C 1.50697 * 109.47257 * 120.00329 * 2 1 3 6 6 C 1.34334 * 126.44761 * 59.99968 * 5 2 1 7 7 N 1.34474 * 107.67097 * 180.02562 * 6 5 2 8 8 C 1.30254 * 108.70431 * 359.97438 * 7 6 5 9 9 C 1.50693 * 125.62442 * 179.97438 * 8 7 6 10 10 O 1.42908 * 109.47081 * 90.02483 * 9 8 7 11 11 C 1.42900 * 113.99997 * 180.02562 * 10 9 8 12 12 C 1.53514 * 114.16934 * 150.00256 * 11 10 9 13 13 N 1.47483 * 87.92777 * 87.81254 * 12 11 10 14 14 C 1.46903 * 110.99717 * 138.70421 * 13 12 11 15 15 C 1.50694 * 109.47066 * 169.99804 * 14 13 12 16 16 H 1.08000 * 120.00563 * 359.97438 * 15 14 13 17 17 C 1.37885 * 119.99902 * 180.02562 * 15 14 13 18 18 N 1.31516 * 119.99913 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99766 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.46985 * 179.97438 * 19 17 15 21 21 H 1.48494 * 109.47276 * 299.99832 * 19 17 15 22 22 H 1.48498 * 109.47150 * 60.00043 * 19 17 15 23 23 C 1.47480 * 87.83900 * 27.00973 * 13 12 11 24 24 O 1.33971 * 108.75839 * 0.23313 * 8 7 6 25 25 H 1.08999 * 109.46912 * 299.99771 * 1 2 3 26 26 H 1.08995 * 109.47336 * 59.99912 * 1 2 3 27 27 H 1.09002 * 109.46904 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47327 * 179.97438 * 3 2 1 29 29 H 1.08995 * 109.47071 * 300.00250 * 3 2 1 30 30 H 1.08999 * 109.47025 * 60.00298 * 3 2 1 31 31 H 1.09007 * 109.46941 * 300.00196 * 4 2 1 32 32 H 1.08995 * 109.47093 * 59.99735 * 4 2 1 33 33 H 1.08997 * 109.47508 * 180.02562 * 4 2 1 34 34 H 1.08003 * 126.15946 * 359.97438 * 6 5 2 35 35 H 1.09003 * 109.47110 * 330.03295 * 9 8 7 36 36 H 1.08996 * 109.47699 * 210.02681 * 9 8 7 37 37 H 1.09004 * 113.25466 * 17.04971 * 11 10 9 38 38 H 1.09000 * 113.47331 * 333.04932 * 12 11 10 39 39 H 1.08995 * 113.52785 * 202.58522 * 12 11 10 40 40 H 1.09007 * 109.47052 * 49.99488 * 14 13 12 41 41 H 1.09003 * 109.46808 * 290.00181 * 14 13 12 42 42 H 0.97001 * 119.99646 * 179.97438 * 18 17 15 43 43 H 1.09004 * 113.47132 * 87.75237 * 23 13 12 44 44 H 1.09000 * 113.47538 * 218.21976 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 2.0324 -0.7105 1.2304 6 6 1.7891 -1.9872 1.5700 7 7 2.4171 -2.2265 2.7348 8 6 3.0307 -1.1404 3.1094 9 6 3.8523 -0.9843 4.3629 10 8 5.2126 -1.3241 4.0863 11 6 6.0813 -1.2097 5.2151 12 6 7.2669 -2.1849 5.1972 13 7 8.0162 -1.1758 4.4256 14 6 9.4070 -1.0845 4.8896 15 6 10.2013 -0.2345 3.9317 16 1 9.7212 0.1946 3.0647 17 6 11.5415 -0.0056 4.1616 18 7 12.1263 -0.5285 5.2171 19 14 12.5262 1.0474 2.9737 20 1 13.9322 1.1398 3.4428 21 1 12.4940 0.4318 1.6228 22 1 11.9352 2.4083 2.9118 23 6 7.1770 -0.1451 5.0649 24 8 2.8063 -0.1831 2.1993 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9563 -0.8899 30 1 1.6768 1.9563 0.8900 31 1 1.6767 -1.7489 -1.2493 32 1 1.6767 -0.2074 -2.1392 33 1 3.1300 -0.7216 -1.2491 34 1 1.1953 -2.6937 1.0090 35 1 3.4630 -1.6455 5.1372 36 1 3.7985 0.0487 4.7064 37 1 5.5491 -1.1715 6.1656 38 1 7.0684 -3.0994 4.6384 39 1 7.6872 -2.3769 6.1843 40 1 9.8412 -2.0833 4.9350 41 1 9.4303 -0.6328 5.8814 42 1 13.0692 -0.3677 5.3785 43 1 7.5730 0.2078 6.0172 44 1 6.9026 0.6689 4.3940 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001223417198.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:58 Heat of formation + Delta-G solvation = -14.021826 kcal Electronic energy + Delta-G solvation = -23291.377871 eV Core-core repulsion = 19824.876489 eV Total energy + Delta-G solvation = -3466.501382 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -44.44445 -41.09782 -38.25297 -37.76894 -35.83234 -35.01180 -31.89936 -30.76500 -28.42812 -28.21047 -27.65333 -27.05831 -26.65455 -23.82271 -23.63625 -22.63053 -20.94968 -20.66923 -18.65921 -18.32842 -17.99335 -17.36776 -17.02016 -16.58696 -16.40272 -15.92020 -15.53108 -15.30704 -15.03284 -14.95121 -14.79358 -14.39132 -14.02847 -13.67706 -13.42538 -13.22789 -13.15090 -13.02793 -12.79926 -12.65261 -12.64410 -12.45452 -12.40163 -12.30762 -12.04793 -12.01420 -11.94283 -11.50737 -11.49239 -11.29108 -10.64466 -10.56263 -9.77394 -9.54686 -8.24817 -6.35046 0.27392 1.37049 1.40788 1.42361 1.49130 1.62027 2.37616 2.54925 3.06553 3.09179 3.40020 3.53001 3.54839 3.79070 3.90616 3.96934 3.98121 4.07537 4.21248 4.35313 4.44831 4.51664 4.61347 4.66219 4.67983 4.70486 4.70758 4.80479 4.81732 4.85433 4.93420 4.98517 4.98886 5.03917 5.05534 5.21542 5.24327 5.32953 5.35722 5.56897 5.80095 6.05816 6.16078 6.48806 6.64961 6.78850 7.34358 8.85943 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.018215 B = 0.002967 C = 0.002659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1536.862563 B = 9436.312834 C =10528.142807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.016 3.984 3 C -0.146 4.146 4 C -0.140 4.140 5 C -0.027 4.027 6 C -0.055 4.055 7 N -0.485 5.485 8 C 0.170 3.830 9 C 0.155 3.845 10 O -0.374 6.374 11 C 0.086 3.914 12 C -0.010 4.010 13 N -0.492 5.492 14 C 0.173 3.827 15 C -0.530 4.530 16 H 0.052 0.948 17 C 0.003 3.997 18 N -0.932 5.932 19 Si 0.969 3.031 20 H -0.277 1.277 21 H -0.272 1.272 22 H -0.267 1.267 23 C -0.013 4.013 24 O -0.204 6.204 25 H 0.054 0.946 26 H 0.091 0.909 27 H 0.071 0.929 28 H 0.042 0.958 29 H 0.089 0.911 30 H 0.055 0.945 31 H 0.071 0.929 32 H 0.093 0.907 33 H 0.042 0.958 34 H 0.207 0.793 35 H 0.119 0.881 36 H 0.103 0.897 37 H 0.131 0.869 38 H 0.078 0.922 39 H 0.086 0.914 40 H -0.001 1.001 41 H -0.012 1.012 42 H 0.266 0.734 43 H 0.079 0.921 44 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.108 1.947 -6.775 28.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.016 3.984 3 C -0.203 4.203 4 C -0.197 4.197 5 C -0.080 4.080 6 C -0.194 4.194 7 N -0.216 5.216 8 C -0.036 4.036 9 C 0.079 3.921 10 O -0.292 6.292 11 C 0.028 3.972 12 C -0.139 4.139 13 N -0.215 5.215 14 C 0.046 3.954 15 C -0.568 4.568 16 H 0.070 0.930 17 C -0.195 4.195 18 N -0.572 5.572 19 Si 0.794 3.206 20 H -0.202 1.202 21 H -0.197 1.197 22 H -0.192 1.192 23 C -0.142 4.142 24 O -0.091 6.091 25 H 0.073 0.927 26 H 0.110 0.890 27 H 0.090 0.910 28 H 0.061 0.939 29 H 0.108 0.892 30 H 0.074 0.926 31 H 0.090 0.910 32 H 0.112 0.888 33 H 0.061 0.939 34 H 0.224 0.776 35 H 0.137 0.863 36 H 0.120 0.880 37 H 0.148 0.852 38 H 0.097 0.903 39 H 0.104 0.896 40 H 0.017 0.983 41 H 0.006 0.994 42 H 0.075 0.925 43 H 0.097 0.903 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -26.734 1.327 -7.234 27.727 hybrid contribution 1.225 0.927 0.340 1.574 sum -25.508 2.254 -6.894 26.520 Atomic orbital electron populations 1.21928 0.90193 1.03581 1.03497 1.19396 0.97252 0.94950 0.86850 1.21892 1.00753 0.94251 1.03400 1.21964 1.00773 1.01238 0.95761 1.24204 0.96427 0.94914 0.92498 1.23432 1.04932 0.96249 0.94787 1.70395 1.11275 1.26274 1.13677 1.26077 1.00710 0.82200 0.94641 1.20855 0.80103 1.03820 0.87370 1.88021 1.17534 1.88440 1.35253 1.23150 0.89338 0.95200 0.89544 1.24126 0.93494 0.97744 0.98525 1.68968 1.02616 1.04754 1.45197 1.19952 0.86643 0.95198 0.93630 1.21389 0.94824 1.31071 1.09553 0.93020 1.25912 0.98743 0.97432 0.97420 1.70055 1.12146 1.46095 1.28904 0.85440 0.77332 0.79082 0.78795 1.20173 1.19696 1.19195 1.24311 0.94186 0.96865 0.98880 1.84405 1.54201 1.41737 1.28732 0.92682 0.88998 0.91039 0.93890 0.89171 0.92604 0.91025 0.88786 0.93898 0.77640 0.86298 0.87951 0.85197 0.90330 0.89591 0.98278 0.99399 0.92483 0.90297 0.90996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.33 8.35 71.98 0.60 -0.73 16 2 C 0.02 0.24 0.93 -52.93 -0.05 0.20 16 3 C -0.15 -2.28 8.06 71.98 0.58 -1.70 16 4 C -0.14 -1.83 8.35 71.98 0.60 -1.23 16 5 C -0.03 -0.61 5.70 24.79 0.14 -0.47 16 6 C -0.06 -1.29 11.24 83.40 0.94 -0.35 16 7 N -0.48 -14.02 11.29 -303.83 -3.43 -17.46 16 8 C 0.17 4.79 7.97 88.34 0.70 5.49 16 9 C 0.16 3.64 6.40 71.23 0.46 4.09 16 10 O -0.37 -12.06 10.38 -148.98 -1.55 -13.60 16 11 C 0.09 2.54 4.65 30.94 0.14 2.68 16 12 C -0.01 -0.35 7.52 83.58 0.63 0.27 16 13 N -0.49 -23.11 6.32 -932.86 -5.89 -29.01 16 14 C 0.17 9.61 4.57 85.55 0.39 10.00 16 15 C -0.53 -32.05 9.39 25.60 0.24 -31.81 16 16 H 0.05 3.16 7.81 -2.91 -0.02 3.13 16 17 C 0.00 0.19 5.46 84.66 0.46 0.65 16 18 N -0.93 -57.17 13.29 21.45 0.28 -56.89 16 19 Si 0.97 45.95 29.54 68.60 2.03 47.97 16 20 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 21 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 22 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 23 C -0.01 -0.49 7.56 83.58 0.63 0.14 16 24 O -0.20 -5.73 10.24 -3.81 -0.04 -5.77 16 25 H 0.05 0.61 8.14 -2.39 -0.02 0.60 16 26 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 27 H 0.07 0.60 8.02 -2.39 -0.02 0.58 16 28 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.07 0.81 8.02 -2.38 -0.02 0.79 16 32 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 34 H 0.21 3.37 8.06 -2.91 -0.02 3.35 16 35 H 0.12 2.12 8.14 -2.39 -0.02 2.10 16 36 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 37 H 0.13 2.55 7.88 -2.38 -0.02 2.54 16 38 H 0.08 2.89 8.14 -2.39 -0.02 2.87 16 39 H 0.09 2.90 7.91 -2.39 -0.02 2.88 16 40 H 0.00 -0.05 8.08 -2.38 -0.02 -0.07 16 41 H -0.01 -0.67 7.30 -2.39 -0.02 -0.69 16 42 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 43 H 0.08 2.87 7.42 -2.39 -0.02 2.85 16 44 H 0.07 2.77 8.14 -2.39 -0.02 2.75 16 Total: -1.00 -76.85 366.90 -1.17 -78.02 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: 0.96 Total: 9.49 kcal Atomic # 6 Polarization: -19.23 SS G_CDS: 6.47 Total: -12.76 kcal Atomic # 7 Polarization: -94.31 SS G_CDS: -9.04 Total: -103.35 kcal Atomic # 8 Polarization: -17.79 SS G_CDS: -1.59 Total: -19.37 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 2.03 Total: 47.97 kcal Total: -76.85 -1.17 -78.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223417198.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.999 kcal (2) G-P(sol) polarization free energy of solvation -76.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds