Wall clock time and date at job start Tue Mar 31 2020 06:58:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52999 * 109.47062 * 2 1 4 4 C 1.53001 * 109.46723 * 240.00046 * 2 1 3 5 5 C 1.50698 * 109.46563 * 120.00280 * 2 1 3 6 6 C 1.34328 * 126.44734 * 60.00083 * 5 2 1 7 7 N 1.34474 * 107.66839 * 180.02562 * 6 5 2 8 8 C 1.30256 * 108.70177 * 359.97438 * 7 6 5 9 9 C 1.50707 * 125.61711 * 179.97438 * 8 7 6 10 10 O 1.42899 * 109.46768 * 90.02673 * 9 8 7 11 11 C 1.42900 * 113.99779 * 179.97438 * 10 9 8 12 12 H 1.09002 * 110.88964 * 32.42357 * 11 10 9 13 13 C 1.55157 * 111.03819 * 156.33264 * 11 10 9 14 14 C 1.54334 * 103.02095 * 153.39191 * 13 11 10 15 15 N 1.47014 * 107.26782 * 338.14225 * 14 13 11 16 16 C 1.36945 * 125.64902 * 178.84833 * 15 14 13 17 17 H 1.07997 * 119.99756 * 179.68982 * 16 15 14 18 18 C 1.38805 * 119.99878 * 359.68887 * 16 15 14 19 19 N 1.31624 * 120.00257 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99929 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.47187 * 179.97438 * 20 18 16 22 22 H 1.48494 * 109.47141 * 300.00154 * 20 18 16 23 23 H 1.48498 * 109.47018 * 60.00200 * 20 18 16 24 24 C 1.47428 * 108.70537 * 358.58102 * 15 14 13 25 25 O 1.33964 * 108.76213 * 0.22750 * 8 7 6 26 26 H 1.08996 * 109.46611 * 300.00109 * 1 2 3 27 27 H 1.08999 * 109.46948 * 59.99742 * 1 2 3 28 28 H 1.08990 * 109.47050 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.46665 * 179.97438 * 3 2 1 30 30 H 1.08999 * 109.47450 * 299.99951 * 3 2 1 31 31 H 1.09004 * 109.47136 * 60.00455 * 3 2 1 32 32 H 1.09003 * 109.47072 * 299.99752 * 4 2 1 33 33 H 1.08999 * 109.47235 * 60.00388 * 4 2 1 34 34 H 1.09005 * 109.46725 * 180.02562 * 4 2 1 35 35 H 1.07993 * 126.16482 * 359.97438 * 6 5 2 36 36 H 1.08996 * 109.47100 * 330.02751 * 9 8 7 37 37 H 1.08996 * 109.46936 * 210.02262 * 9 8 7 38 38 H 1.08998 * 110.71770 * 271.95360 * 13 11 10 39 39 H 1.09002 * 110.71853 * 35.04793 * 13 11 10 40 40 H 1.08998 * 109.99457 * 218.65928 * 14 13 11 41 41 H 1.09007 * 109.77698 * 97.49747 * 14 13 11 42 42 H 0.97001 * 119.99885 * 179.97438 * 19 18 16 43 43 H 1.09003 * 110.36579 * 143.19056 * 24 15 14 44 44 H 1.08999 * 110.36944 * 265.52330 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 2.0323 -0.7105 1.2305 6 6 1.7888 -1.9871 1.5700 7 7 2.4167 -2.2265 2.7348 8 6 3.0303 -1.1403 3.1094 9 6 3.8519 -0.9843 4.3632 10 8 5.2121 -1.3241 4.0867 11 6 6.0809 -1.2087 5.2153 12 1 5.5514 -1.4423 6.1390 13 6 7.3329 -2.1099 5.0489 14 6 8.3968 -1.3883 5.9028 15 7 7.9717 0.0126 6.0373 16 6 8.6328 0.9831 6.7419 17 1 8.2394 1.9884 6.7757 18 6 9.8082 0.6748 7.4126 19 7 10.2879 -0.5502 7.3710 20 14 10.7103 1.9989 8.3732 21 1 11.9278 1.4176 8.9937 22 1 11.0994 3.0987 7.4544 23 1 9.8206 2.5327 9.4355 24 6 6.7193 0.2012 5.2827 25 8 2.8062 -0.1831 2.1994 26 1 -0.3632 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 3.1301 1.4424 0.0005 30 1 1.6768 1.9564 -0.8900 31 1 1.6768 1.9563 0.8901 32 1 1.6766 -1.7490 -1.2492 33 1 1.6767 -0.2074 -2.1392 34 1 3.1300 -0.7217 -1.2491 35 1 1.1951 -2.6937 1.0091 36 1 3.4624 -1.6453 5.1374 37 1 3.7981 0.0488 4.7066 38 1 7.1409 -3.1116 5.4333 39 1 7.6417 -2.1519 4.0043 40 1 9.3668 -1.4355 5.4079 41 1 8.4575 -1.8534 6.8868 42 1 11.1095 -0.7655 7.8394 43 1 6.0598 0.8915 5.8086 44 1 6.9328 0.5693 4.2792 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001223418927.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:06 Heat of formation + Delta-G solvation = -3.503439 kcal Electronic energy + Delta-G solvation = -23538.883821 eV Core-core repulsion = 20072.838551 eV Total energy + Delta-G solvation = -3466.045271 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.46244 -38.48740 -37.37185 -36.00049 -34.79992 -32.30364 -30.61080 -29.14378 -27.78559 -27.71052 -27.25206 -26.35413 -24.27241 -22.90941 -21.64003 -20.38246 -20.08120 -19.87924 -17.32940 -17.19287 -16.78658 -16.20076 -15.59943 -15.21477 -14.66584 -14.54703 -14.37547 -14.05922 -13.96354 -13.58418 -13.30893 -12.75645 -12.66781 -12.51732 -12.29006 -12.08455 -11.94176 -11.89440 -11.64036 -11.44832 -11.37817 -11.32090 -11.02491 -10.93111 -10.73686 -10.53084 -10.24783 -10.13304 -9.83454 -9.72771 -9.22502 -8.83888 -8.60121 -6.84993 -5.71572 -3.06003 1.27206 2.39002 2.57829 3.40963 3.44862 3.46424 3.67574 4.23820 4.32538 4.44905 4.49708 4.52752 4.75415 4.91542 5.12459 5.17850 5.19195 5.29404 5.35247 5.40354 5.42979 5.44543 5.47289 5.48127 5.55939 5.63748 5.69844 5.73224 5.80192 5.86047 5.88965 6.00221 6.17724 6.23447 6.43426 6.52980 6.64948 6.66954 7.44947 7.54540 7.61132 7.65863 7.81533 8.24713 9.20810 9.80800 10.46184 11.40082 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.029536 B = 0.002748 C = 0.002625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.760585 B =10187.303712 C =10664.893420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.018 3.982 3 C -0.146 4.146 4 C -0.141 4.141 5 C -0.031 4.031 6 C -0.042 4.042 7 N -0.465 5.465 8 C 0.196 3.804 9 C 0.160 3.840 10 O -0.372 6.372 11 C 0.073 3.927 12 H 0.073 0.927 13 C -0.136 4.136 14 C 0.179 3.821 15 N -0.604 5.604 16 C -0.230 4.230 17 H 0.078 0.922 18 C -0.008 4.008 19 N -0.923 5.923 20 Si 0.914 3.086 21 H -0.290 1.290 22 H -0.285 1.285 23 H -0.285 1.285 24 C 0.117 3.883 25 O -0.188 6.188 26 H 0.060 0.940 27 H 0.069 0.931 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.069 0.931 34 H 0.062 0.938 35 H 0.181 0.819 36 H 0.093 0.907 37 H 0.079 0.921 38 H 0.066 0.934 39 H 0.067 0.933 40 H 0.047 0.953 41 H 0.050 0.950 42 H 0.254 0.746 43 H 0.039 0.961 44 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.008 -0.694 -14.475 24.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.017 3.983 3 C -0.203 4.203 4 C -0.198 4.198 5 C -0.085 4.085 6 C -0.181 4.181 7 N -0.195 5.195 8 C -0.011 4.011 9 C 0.082 3.918 10 O -0.291 6.291 11 C 0.015 3.985 12 H 0.091 0.909 13 C -0.174 4.174 14 C 0.054 3.946 15 N -0.331 5.331 16 C -0.358 4.358 17 H 0.096 0.904 18 C -0.204 4.204 19 N -0.570 5.570 20 Si 0.744 3.256 21 H -0.216 1.216 22 H -0.211 1.211 23 H -0.211 1.211 24 C -0.010 4.010 25 O -0.074 6.074 26 H 0.079 0.921 27 H 0.088 0.912 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.088 0.912 34 H 0.081 0.919 35 H 0.198 0.802 36 H 0.111 0.889 37 H 0.097 0.903 38 H 0.084 0.916 39 H 0.085 0.915 40 H 0.065 0.935 41 H 0.068 0.932 42 H 0.064 0.936 43 H 0.057 0.943 44 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -19.687 -1.251 -14.152 24.278 hybrid contribution 0.425 1.256 0.320 1.364 sum -19.262 0.005 -13.831 23.713 Atomic orbital electron populations 1.21933 0.92304 1.02729 1.02715 1.19138 0.95750 0.95350 0.88019 1.21886 1.02063 0.93860 1.02522 1.21938 1.01971 1.00437 0.95434 1.23419 0.97974 0.94622 0.92474 1.22971 1.04526 0.95451 0.95134 1.70441 1.10759 1.25918 1.12394 1.25829 0.99631 0.81899 0.93701 1.20481 0.82307 1.01937 0.87070 1.87954 1.15903 1.88837 1.36357 1.23537 0.90029 0.97986 0.86982 0.90912 1.22992 0.94728 0.98091 1.01631 1.21187 0.93254 0.83211 0.96944 1.44346 1.23308 1.07309 1.58182 1.19016 1.03573 0.90020 1.23191 0.90412 1.24819 0.98047 0.96842 1.00710 1.69945 1.22658 1.17476 1.46917 0.86170 0.79094 0.80590 0.79723 1.21556 1.21143 1.21139 1.21950 0.89262 0.93968 0.95813 1.84410 1.53658 1.41262 1.28112 0.92091 0.91176 0.91885 0.91782 0.91578 0.91999 0.91880 0.91157 0.91892 0.80223 0.88933 0.90276 0.91564 0.91462 0.93513 0.93161 0.93615 0.94262 0.95411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.86 8.35 37.16 0.31 -0.55 16 2 C 0.02 0.15 0.93 -155.66 -0.15 0.00 16 3 C -0.15 -1.19 8.06 37.16 0.30 -0.89 16 4 C -0.14 -0.96 8.35 37.16 0.31 -0.65 16 5 C -0.03 -0.36 5.70 -35.69 -0.20 -0.57 16 6 C -0.04 -0.50 11.24 -17.77 -0.20 -0.70 16 7 N -0.46 -7.00 11.29 -11.10 -0.13 -7.12 16 8 C 0.20 2.92 7.97 -12.94 -0.10 2.82 16 9 C 0.16 2.25 6.44 36.01 0.23 2.48 16 10 O -0.37 -6.50 10.14 -35.23 -0.36 -6.86 16 11 C 0.07 1.34 3.49 -24.58 -0.09 1.26 16 12 H 0.07 1.25 7.90 -51.93 -0.41 0.84 16 13 C -0.14 -2.69 6.69 -24.89 -0.17 -2.86 16 14 C 0.18 4.42 5.38 -3.06 -0.02 4.40 16 15 N -0.60 -15.74 3.39 -170.06 -0.58 -16.32 16 16 C -0.23 -6.47 10.28 -15.06 -0.15 -6.63 16 17 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 18 C -0.01 -0.22 5.49 -17.43 -0.10 -0.32 16 19 N -0.92 -27.24 10.31 55.49 0.57 -26.67 16 20 Si 0.91 22.16 29.55 -169.99 -5.02 17.14 16 21 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 22 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 23 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 24 C 0.12 2.50 6.97 -2.52 -0.02 2.49 16 25 O -0.19 -2.68 10.24 5.36 0.05 -2.63 16 26 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.06 0.35 8.02 -51.93 -0.42 -0.07 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.06 0.39 8.02 -51.93 -0.42 -0.03 16 33 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 34 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.18 1.61 8.06 -52.49 -0.42 1.19 16 36 H 0.09 1.14 8.11 -51.93 -0.42 0.72 16 37 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 39 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 40 H 0.05 1.27 7.52 -51.93 -0.39 0.88 16 41 H 0.05 1.34 7.37 -51.93 -0.38 0.96 16 42 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 43 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 360.42 15.07 5.43 5.43 Total: -1.00 -32.61 360.42 -7.54 -40.15 By element: Atomic # 1 Polarization: 4.08 SS G_CDS: -7.48 Total: -3.40 kcal Atomic # 6 Polarization: 0.31 SS G_CDS: -0.04 Total: 0.27 kcal Atomic # 7 Polarization: -49.97 SS G_CDS: -0.13 Total: -50.10 kcal Atomic # 8 Polarization: -9.18 SS G_CDS: -0.30 Total: -9.48 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -32.61 -7.54 -40.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223418927.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.643 kcal (2) G-P(sol) polarization free energy of solvation -32.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds