Wall clock time and date at job start Tue Mar 31 2020 06:58:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52999 * 109.47062 * 2 1 4 4 C 1.53001 * 109.46723 * 240.00046 * 2 1 3 5 5 C 1.50698 * 109.46563 * 120.00280 * 2 1 3 6 6 C 1.34328 * 126.44734 * 60.00083 * 5 2 1 7 7 N 1.34474 * 107.66839 * 180.02562 * 6 5 2 8 8 C 1.30256 * 108.70177 * 359.97438 * 7 6 5 9 9 C 1.50707 * 125.61711 * 179.97438 * 8 7 6 10 10 O 1.42899 * 109.46768 * 90.02673 * 9 8 7 11 11 C 1.42900 * 113.99779 * 179.97438 * 10 9 8 12 12 H 1.09002 * 110.88964 * 32.42357 * 11 10 9 13 13 C 1.55157 * 111.03819 * 156.33264 * 11 10 9 14 14 C 1.54334 * 103.02095 * 153.39191 * 13 11 10 15 15 N 1.47014 * 107.26782 * 338.14225 * 14 13 11 16 16 C 1.36945 * 125.64902 * 178.84833 * 15 14 13 17 17 H 1.07997 * 119.99756 * 179.68982 * 16 15 14 18 18 C 1.38805 * 119.99878 * 359.68887 * 16 15 14 19 19 N 1.31624 * 120.00257 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99929 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.47187 * 179.97438 * 20 18 16 22 22 H 1.48494 * 109.47141 * 300.00154 * 20 18 16 23 23 H 1.48498 * 109.47018 * 60.00200 * 20 18 16 24 24 C 1.47428 * 108.70537 * 358.58102 * 15 14 13 25 25 O 1.33964 * 108.76213 * 0.22750 * 8 7 6 26 26 H 1.08996 * 109.46611 * 300.00109 * 1 2 3 27 27 H 1.08999 * 109.46948 * 59.99742 * 1 2 3 28 28 H 1.08990 * 109.47050 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.46665 * 179.97438 * 3 2 1 30 30 H 1.08999 * 109.47450 * 299.99951 * 3 2 1 31 31 H 1.09004 * 109.47136 * 60.00455 * 3 2 1 32 32 H 1.09003 * 109.47072 * 299.99752 * 4 2 1 33 33 H 1.08999 * 109.47235 * 60.00388 * 4 2 1 34 34 H 1.09005 * 109.46725 * 180.02562 * 4 2 1 35 35 H 1.07993 * 126.16482 * 359.97438 * 6 5 2 36 36 H 1.08996 * 109.47100 * 330.02751 * 9 8 7 37 37 H 1.08996 * 109.46936 * 210.02262 * 9 8 7 38 38 H 1.08998 * 110.71770 * 271.95360 * 13 11 10 39 39 H 1.09002 * 110.71853 * 35.04793 * 13 11 10 40 40 H 1.08998 * 109.99457 * 218.65928 * 14 13 11 41 41 H 1.09007 * 109.77698 * 97.49747 * 14 13 11 42 42 H 0.97001 * 119.99885 * 179.97438 * 19 18 16 43 43 H 1.09003 * 110.36579 * 143.19056 * 24 15 14 44 44 H 1.08999 * 110.36944 * 265.52330 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 2.0323 -0.7105 1.2305 6 6 1.7888 -1.9871 1.5700 7 7 2.4167 -2.2265 2.7348 8 6 3.0303 -1.1403 3.1094 9 6 3.8519 -0.9843 4.3632 10 8 5.2121 -1.3241 4.0867 11 6 6.0809 -1.2087 5.2153 12 1 5.5514 -1.4423 6.1390 13 6 7.3329 -2.1099 5.0489 14 6 8.3968 -1.3883 5.9028 15 7 7.9717 0.0126 6.0373 16 6 8.6328 0.9831 6.7419 17 1 8.2394 1.9884 6.7757 18 6 9.8082 0.6748 7.4126 19 7 10.2879 -0.5502 7.3710 20 14 10.7103 1.9989 8.3732 21 1 11.9278 1.4176 8.9937 22 1 11.0994 3.0987 7.4544 23 1 9.8206 2.5327 9.4355 24 6 6.7193 0.2012 5.2827 25 8 2.8062 -0.1831 2.1994 26 1 -0.3632 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 3.1301 1.4424 0.0005 30 1 1.6768 1.9564 -0.8900 31 1 1.6768 1.9563 0.8901 32 1 1.6766 -1.7490 -1.2492 33 1 1.6767 -0.2074 -2.1392 34 1 3.1300 -0.7217 -1.2491 35 1 1.1951 -2.6937 1.0091 36 1 3.4624 -1.6453 5.1374 37 1 3.7981 0.0488 4.7066 38 1 7.1409 -3.1116 5.4333 39 1 7.6417 -2.1519 4.0043 40 1 9.3668 -1.4355 5.4079 41 1 8.4575 -1.8534 6.8868 42 1 11.1095 -0.7655 7.8394 43 1 6.0598 0.8915 5.8086 44 1 6.9328 0.5693 4.2792 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001223418927.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:05 Heat of formation + Delta-G solvation = -25.306646 kcal Electronic energy + Delta-G solvation = -23539.829279 eV Core-core repulsion = 20072.838551 eV Total energy + Delta-G solvation = -3466.990729 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -44.45658 -39.99862 -38.09851 -37.59693 -35.84297 -34.26493 -31.84242 -30.91332 -28.95850 -28.38087 -28.20160 -27.51815 -26.21320 -23.82295 -22.68365 -22.09200 -21.87815 -20.66662 -19.02043 -18.45582 -18.02420 -17.42090 -16.70274 -16.55721 -16.39347 -15.72516 -15.53227 -15.14560 -14.94486 -14.81631 -14.38947 -14.26777 -13.93508 -13.77432 -13.24281 -13.18417 -13.11098 -12.94275 -12.72546 -12.64398 -12.61813 -12.47242 -12.31275 -12.09443 -12.07689 -12.03489 -11.93588 -11.78714 -11.49683 -11.49225 -10.72585 -10.65082 -9.77655 -8.94364 -7.86307 -5.23628 0.26901 1.41161 1.46693 1.50304 1.56643 1.60921 2.45991 2.60574 3.15993 3.32715 3.51485 3.72781 3.74830 3.81216 3.91303 3.95077 4.03787 4.11186 4.15997 4.23109 4.33818 4.58519 4.61411 4.67607 4.71535 4.72329 4.81455 4.82076 4.91881 4.94242 4.98488 4.99452 5.02752 5.06019 5.21326 5.24408 5.34253 5.35964 5.42832 5.60712 5.71164 6.05859 6.19646 6.64685 7.07297 7.73218 8.37577 9.24079 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.029536 B = 0.002748 C = 0.002625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.760585 B =10187.303712 C =10664.893420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.016 3.984 3 C -0.146 4.146 4 C -0.139 4.139 5 C -0.027 4.027 6 C -0.054 4.054 7 N -0.484 5.484 8 C 0.172 3.828 9 C 0.156 3.844 10 O -0.385 6.385 11 C 0.093 3.907 12 H 0.093 0.907 13 C -0.125 4.125 14 C 0.187 3.813 15 N -0.625 5.625 16 C -0.247 4.247 17 H 0.085 0.915 18 C -0.065 4.065 19 N -0.952 5.952 20 Si 0.983 3.017 21 H -0.294 1.294 22 H -0.278 1.278 23 H -0.274 1.274 24 C 0.113 3.887 25 O -0.204 6.204 26 H 0.052 0.948 27 H 0.092 0.908 28 H 0.071 0.929 29 H 0.044 0.956 30 H 0.090 0.910 31 H 0.052 0.948 32 H 0.071 0.929 33 H 0.093 0.907 34 H 0.045 0.955 35 H 0.208 0.792 36 H 0.112 0.888 37 H 0.094 0.906 38 H 0.091 0.909 39 H 0.067 0.933 40 H 0.009 0.991 41 H 0.023 0.977 42 H 0.249 0.751 43 H 0.054 0.946 44 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.198 -0.201 -15.516 27.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.016 3.984 3 C -0.203 4.203 4 C -0.196 4.196 5 C -0.080 4.080 6 C -0.193 4.193 7 N -0.215 5.215 8 C -0.034 4.034 9 C 0.079 3.921 10 O -0.303 6.303 11 C 0.035 3.965 12 H 0.111 0.889 13 C -0.163 4.163 14 C 0.062 3.938 15 N -0.353 5.353 16 C -0.376 4.376 17 H 0.102 0.898 18 C -0.258 4.258 19 N -0.600 5.600 20 Si 0.810 3.190 21 H -0.220 1.220 22 H -0.204 1.204 23 H -0.199 1.199 24 C -0.013 4.013 25 O -0.090 6.090 26 H 0.071 0.929 27 H 0.111 0.889 28 H 0.090 0.910 29 H 0.064 0.936 30 H 0.109 0.891 31 H 0.071 0.929 32 H 0.090 0.910 33 H 0.112 0.888 34 H 0.064 0.936 35 H 0.225 0.775 36 H 0.130 0.870 37 H 0.112 0.888 38 H 0.110 0.890 39 H 0.085 0.915 40 H 0.028 0.972 41 H 0.042 0.958 42 H 0.058 0.942 43 H 0.072 0.928 44 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges -21.915 -0.742 -15.212 26.688 hybrid contribution 1.019 1.125 0.521 1.604 sum -20.896 0.382 -14.692 25.547 Atomic orbital electron populations 1.21938 0.90364 1.03583 1.03436 1.19406 0.97147 0.94973 0.86906 1.21898 1.00873 0.94239 1.03317 1.21957 1.00898 1.01195 0.95556 1.24232 0.96411 0.94865 0.92482 1.23452 1.04873 0.96307 0.94666 1.70407 1.11196 1.26266 1.13659 1.25919 1.00788 0.82269 0.94468 1.20714 0.80452 1.03347 0.87538 1.87919 1.17537 1.88909 1.35951 1.23202 0.89913 0.95214 0.88215 0.88903 1.22820 0.93911 0.98982 1.00634 1.20918 0.93451 0.83429 0.95985 1.44647 1.24867 1.07437 1.58341 1.19443 1.04019 0.90925 1.23178 0.89760 1.25707 0.99022 0.99056 1.02063 1.70168 1.22771 1.19347 1.47764 0.85098 0.77552 0.77933 0.78405 1.21961 1.20411 1.19941 1.22095 0.88014 0.96407 0.94761 1.84409 1.54232 1.41657 1.28691 0.92898 0.88948 0.91005 0.93644 0.89129 0.92877 0.91003 0.88802 0.93612 0.77478 0.86996 0.88780 0.89036 0.91459 0.97226 0.95830 0.94213 0.92808 0.96283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.30 8.35 71.99 0.60 -0.70 16 2 C 0.02 0.23 0.93 -52.93 -0.05 0.18 16 3 C -0.15 -2.17 8.06 71.98 0.58 -1.59 16 4 C -0.14 -1.58 8.35 71.98 0.60 -0.98 16 5 C -0.03 -0.59 5.70 24.79 0.14 -0.45 16 6 C -0.05 -1.23 11.24 83.39 0.94 -0.30 16 7 N -0.48 -14.07 11.29 -303.83 -3.43 -17.50 16 8 C 0.17 4.98 7.97 88.34 0.70 5.68 16 9 C 0.16 4.18 6.44 71.24 0.46 4.64 16 10 O -0.38 -12.92 10.14 -148.98 -1.51 -14.43 16 11 C 0.09 3.31 3.49 31.99 0.11 3.42 16 12 H 0.09 2.97 7.90 -2.39 -0.02 2.95 16 13 C -0.13 -4.89 6.69 31.79 0.21 -4.68 16 14 C 0.19 9.50 5.38 86.73 0.47 9.97 16 15 N -0.63 -33.01 3.39 -691.95 -2.35 -35.36 16 16 C -0.25 -14.05 10.28 84.03 0.86 -13.18 16 17 H 0.08 4.54 7.83 -2.91 -0.02 4.52 16 18 C -0.07 -3.76 5.49 84.86 0.47 -3.30 16 19 N -0.95 -57.80 10.31 21.65 0.22 -57.58 16 20 Si 0.98 45.93 29.55 68.60 2.03 47.96 16 21 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 22 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 23 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 24 C 0.11 4.79 6.97 86.86 0.61 5.39 16 25 O -0.20 -5.71 10.24 -3.74 -0.04 -5.74 16 26 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 27 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 28 H 0.07 0.57 8.02 -2.39 -0.02 0.56 16 29 H 0.04 0.83 8.14 -2.38 -0.02 0.81 16 30 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.07 0.69 8.02 -2.39 -0.02 0.67 16 33 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 34 H 0.04 0.68 8.14 -2.38 -0.02 0.66 16 35 H 0.21 3.23 8.06 -2.91 -0.02 3.21 16 36 H 0.11 2.53 8.11 -2.39 -0.02 2.51 16 37 H 0.09 2.19 8.14 -2.39 -0.02 2.18 16 38 H 0.09 3.11 8.14 -2.39 -0.02 3.09 16 39 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 40 H 0.01 0.54 7.52 -2.39 -0.02 0.53 16 41 H 0.02 1.30 7.37 -2.38 -0.02 1.28 16 42 H 0.25 14.66 8.31 -92.71 -0.77 13.89 16 43 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 44 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 Total: -1.00 -71.81 360.42 2.58 -69.23 By element: Atomic # 1 Polarization: 8.36 SS G_CDS: 0.96 Total: 9.32 kcal Atomic # 6 Polarization: -2.59 SS G_CDS: 6.70 Total: 4.11 kcal Atomic # 7 Polarization: -104.88 SS G_CDS: -5.56 Total: -110.44 kcal Atomic # 8 Polarization: -18.63 SS G_CDS: -1.55 Total: -20.18 kcal Atomic # 14 Polarization: 45.93 SS G_CDS: 2.03 Total: 47.96 kcal Total: -71.81 2.58 -69.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223418927.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.923 kcal (2) G-P(sol) polarization free energy of solvation -71.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds