Wall clock time and date at job start Tue Mar 31 2020 07:26:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46947 * 2 1 4 4 C 1.53000 * 109.46947 * 180.02562 * 3 2 1 5 5 N 1.46904 * 109.47100 * 174.87172 * 4 3 2 6 6 C 1.46904 * 111.00007 * 199.74658 * 5 4 3 7 7 C 1.50694 * 109.47427 * 66.04312 * 6 5 4 8 8 H 1.08003 * 119.99722 * 359.97438 * 7 6 5 9 9 C 1.37878 * 119.99964 * 180.02562 * 7 6 5 10 10 N 1.31517 * 119.99758 * 179.97438 * 9 7 6 11 11 Si 1.86798 * 119.99950 * 359.97438 * 9 7 6 12 12 H 1.48508 * 109.47111 * 90.00045 * 11 9 7 13 13 H 1.48503 * 109.47112 * 209.99713 * 11 9 7 14 14 H 1.48495 * 109.47233 * 329.99870 * 11 9 7 15 15 C 1.46901 * 111.00260 * 75.78765 * 5 4 3 16 16 C 1.50703 * 109.46934 * 199.69025 * 15 5 4 17 17 C 1.35490 * 125.50196 * 264.63665 * 16 15 5 18 18 C 1.39795 * 107.83996 * 180.02562 * 17 16 15 19 19 C 1.37994 * 106.97047 * 359.75925 * 18 17 16 20 20 C 1.46492 * 126.26571 * 180.25216 * 19 18 17 21 21 O 1.21613 * 120.00037 * 0.15414 * 20 19 18 22 22 O 1.34895 * 119.99789 * 180.15239 * 20 19 18 23 23 C 1.45208 * 116.99814 * 179.97438 * 22 20 19 24 24 N 1.34950 * 125.50993 * 84.64229 * 16 15 5 25 25 H 0.96999 * 125.63760 * 359.97226 * 24 16 15 26 26 H 1.09008 * 109.46743 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46845 * 300.00044 * 1 2 3 28 28 H 1.08999 * 109.46801 * 60.00290 * 1 2 3 29 29 H 1.08998 * 109.47684 * 239.99608 * 2 1 3 30 30 H 1.08999 * 109.47324 * 119.99663 * 2 1 3 31 31 H 1.09000 * 109.47384 * 60.00286 * 3 2 1 32 32 H 1.08999 * 109.47133 * 299.99507 * 3 2 1 33 33 H 1.09002 * 109.47295 * 54.87050 * 4 3 2 34 34 H 1.08998 * 109.47573 * 294.86403 * 4 3 2 35 35 H 1.09001 * 109.46785 * 186.04772 * 6 5 4 36 36 H 1.08998 * 109.46500 * 306.03706 * 6 5 4 37 37 H 0.96997 * 119.99501 * 180.02562 * 10 9 7 38 38 H 1.08995 * 109.47158 * 79.68728 * 15 5 4 39 39 H 1.09001 * 109.46987 * 319.68785 * 15 5 4 40 40 H 1.08001 * 126.08191 * 0.04136 * 17 16 15 41 41 H 1.08003 * 126.51899 * 179.97438 * 18 17 16 42 42 H 1.09004 * 109.46716 * 60.00142 * 23 22 20 43 43 H 1.09002 * 109.46707 * 180.02562 * 23 22 20 44 44 H 1.09000 * 109.47055 * 300.00386 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0596 2.8220 -0.1244 6 6 5.4519 2.8465 -0.5924 7 6 5.5178 2.3149 -2.0010 8 1 4.6157 1.9908 -2.4986 9 6 6.7300 2.2412 -2.6539 10 7 6.7876 1.7768 -3.8830 11 14 8.2902 2.8011 -1.7929 12 1 8.8934 1.6548 -1.0666 13 1 9.2550 3.3122 -2.7995 14 1 7.9628 3.8814 -0.8281 15 6 3.9182 3.5469 1.1454 16 6 3.9593 5.0305 0.8842 17 6 5.0601 5.8152 0.9747 18 6 4.6812 7.1228 0.6572 19 6 3.3316 7.0929 0.3712 20 6 2.5030 8.2362 -0.0192 21 8 3.0002 9.3415 -0.1192 22 8 1.1885 8.0628 -0.2678 23 6 0.4289 9.2401 -0.6492 24 7 2.9056 5.7922 0.5225 25 1 1.9989 5.4752 0.3877 26 1 -0.3633 -1.0278 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5139 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 1.6767 1.9564 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 3.9330 0.8513 -0.8414 34 1 3.9338 1.0103 0.9315 35 1 5.8237 3.8709 -0.5729 36 1 6.0653 2.2249 0.0598 37 1 7.6403 1.7246 -4.3422 38 1 4.7349 3.2727 1.8132 39 1 2.9667 3.2857 1.6088 40 1 6.0537 5.4885 1.2441 41 1 5.3235 7.9908 0.6359 42 1 0.8469 9.6616 -1.5635 43 1 -0.6112 8.9620 -0.8192 44 1 0.4809 9.9804 0.1491 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001232075413.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:26:05 Heat of formation + Delta-G solvation = -49.762386 kcal Electronic energy + Delta-G solvation = -23749.427294 eV Core-core repulsion = 20281.376085 eV Total energy + Delta-G solvation = -3468.051209 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.29531 -39.84663 -37.33331 -36.39914 -34.42073 -32.51373 -30.98748 -30.56808 -28.96673 -28.28712 -26.95458 -24.93284 -22.77758 -22.48371 -20.75932 -20.49816 -19.99754 -19.85085 -18.42435 -17.01655 -16.76974 -16.41955 -15.62269 -15.09878 -14.79192 -14.64200 -13.91424 -13.90489 -13.72930 -13.62479 -13.13733 -13.04553 -12.96710 -12.63083 -12.49594 -12.27093 -12.22805 -12.09356 -11.95706 -11.27248 -10.98922 -10.91078 -10.84399 -10.75056 -10.70880 -10.66776 -10.26109 -9.97545 -9.80605 -9.27983 -8.81066 -8.56985 -8.01409 -7.52652 -6.05197 -4.02429 1.34047 2.62395 2.80225 3.28896 3.29967 3.32346 3.37846 3.39939 4.42867 4.64620 4.92143 4.96204 5.04554 5.08619 5.15213 5.22231 5.27364 5.33569 5.36197 5.40230 5.49234 5.63616 5.71778 5.76499 5.93089 5.98102 6.02871 6.07314 6.15737 6.21869 6.26759 6.40029 6.42100 6.60512 6.68570 6.86439 6.92084 6.96763 7.09998 7.54961 7.59787 7.77070 7.82284 7.96242 8.62741 9.02476 9.56567 11.07837 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.009396 B = 0.005219 C = 0.003800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2979.276590 B = 5363.994571 C = 7365.734542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.124 4.124 3 C -0.113 4.113 4 C 0.059 3.941 5 N -0.524 5.524 6 C 0.159 3.841 7 C -0.509 4.509 8 H 0.080 0.920 9 C 0.070 3.930 10 N -0.900 5.900 11 Si 0.872 3.128 12 H -0.278 1.278 13 H -0.286 1.286 14 H -0.263 1.263 15 C 0.104 3.896 16 C 0.105 3.895 17 C -0.209 4.209 18 C -0.086 4.086 19 C -0.062 4.062 20 C 0.540 3.460 21 O -0.508 6.508 22 O -0.366 6.366 23 C 0.040 3.960 24 N -0.512 5.512 25 H 0.421 0.579 26 H 0.049 0.951 27 H 0.049 0.951 28 H 0.053 0.947 29 H 0.065 0.935 30 H 0.056 0.944 31 H 0.048 0.952 32 H 0.069 0.931 33 H 0.095 0.905 34 H 0.022 0.978 35 H 0.038 0.962 36 H -0.016 1.016 37 H 0.263 0.737 38 H 0.057 0.943 39 H 0.076 0.924 40 H 0.144 0.856 41 H 0.148 0.852 42 H 0.064 0.936 43 H 0.100 0.900 44 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.162 5.687 11.557 17.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.162 4.162 3 C -0.151 4.151 4 C -0.069 4.069 5 N -0.248 5.248 6 C 0.033 3.967 7 C -0.547 4.547 8 H 0.098 0.902 9 C -0.132 4.132 10 N -0.539 5.539 11 Si 0.699 3.301 12 H -0.204 1.204 13 H -0.212 1.212 14 H -0.188 1.188 15 C -0.024 4.024 16 C -0.017 4.017 17 C -0.233 4.233 18 C -0.113 4.113 19 C -0.172 4.172 20 C 0.387 3.613 21 O -0.397 6.397 22 O -0.283 6.283 23 C -0.054 4.054 24 N -0.106 5.106 25 H 0.259 0.741 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.072 0.928 29 H 0.084 0.916 30 H 0.075 0.925 31 H 0.067 0.933 32 H 0.087 0.913 33 H 0.113 0.887 34 H 0.040 0.960 35 H 0.056 0.944 36 H 0.002 0.998 37 H 0.073 0.927 38 H 0.075 0.925 39 H 0.094 0.906 40 H 0.161 0.839 41 H 0.165 0.835 42 H 0.083 0.917 43 H 0.119 0.881 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -12.379 6.243 10.973 17.681 hybrid contribution 0.995 -0.062 0.672 1.202 sum -11.384 6.181 11.644 17.418 Atomic orbital electron populations 1.21757 0.96347 1.01070 1.01504 1.21491 0.95281 0.97441 1.02021 1.21622 0.96022 0.95843 1.01627 1.22107 0.93859 0.89917 1.01010 1.61960 1.24768 1.13964 1.24126 1.20284 0.83103 0.97116 0.96207 1.20987 0.95332 1.41703 0.96658 0.90223 1.24877 0.98740 0.94866 0.94720 1.69891 1.25830 1.46581 1.11617 0.86902 0.83727 0.79580 0.79854 1.20428 1.21203 1.18804 1.20737 1.01642 0.86927 0.93141 1.20469 0.87046 0.93499 1.00656 1.20698 0.98482 0.92525 1.11599 1.21271 0.91580 0.98117 1.00319 1.19093 0.94109 0.83180 1.20855 1.19848 0.80209 0.87455 0.73776 1.90873 1.73548 1.25332 1.49908 1.86576 1.22067 1.39664 1.79977 1.23236 0.95084 0.86306 1.00783 1.41673 1.11142 1.06384 1.51405 0.74122 0.93189 0.93216 0.92762 0.91647 0.92520 0.93304 0.91257 0.88687 0.96011 0.94387 0.99818 0.92691 0.92499 0.90572 0.83870 0.83473 0.91743 0.88138 0.91930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 9.91 37.16 0.37 -1.19 16 2 C -0.12 -1.53 5.93 -26.73 -0.16 -1.68 16 3 C -0.11 -1.58 5.26 -26.73 -0.14 -1.72 16 4 C 0.06 1.01 4.79 -3.82 -0.02 0.99 16 5 N -0.52 -9.91 4.35 -237.51 -1.03 -10.95 16 6 C 0.16 3.65 3.61 -4.98 -0.02 3.64 16 7 C -0.51 -14.00 8.79 -34.44 -0.30 -14.31 16 8 H 0.08 2.39 7.56 -52.48 -0.40 2.00 16 9 C 0.07 1.98 5.47 -17.82 -0.10 1.89 16 10 N -0.90 -27.31 13.96 55.43 0.77 -26.53 16 11 Si 0.87 21.25 27.47 -169.99 -4.67 16.58 16 12 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 13 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 14 H -0.26 -6.14 6.54 56.52 0.37 -5.77 16 15 C 0.10 1.58 5.34 -4.97 -0.03 1.56 16 16 C 0.10 1.64 6.17 -82.20 -0.51 1.13 16 17 C -0.21 -3.37 9.68 -39.98 -0.39 -3.76 16 18 C -0.09 -1.37 10.66 -39.09 -0.42 -1.78 16 19 C -0.06 -0.97 7.10 -81.99 -0.58 -1.55 16 20 C 0.54 8.28 7.93 34.06 0.27 8.55 16 21 O -0.51 -8.73 16.68 -19.35 -0.32 -9.06 16 22 O -0.37 -4.73 10.58 -41.03 -0.43 -5.16 16 23 C 0.04 0.37 10.57 101.05 1.07 1.44 16 24 N -0.51 -7.39 6.07 -5.82 -0.04 -7.43 16 25 H 0.42 5.15 8.96 -40.82 -0.37 4.79 16 26 H 0.05 0.47 8.14 -51.92 -0.42 0.05 16 27 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 28 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.05 0.60 6.90 -51.93 -0.36 0.24 16 32 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.09 1.93 6.58 -51.93 -0.34 1.58 16 34 H 0.02 0.35 8.00 -51.93 -0.42 -0.07 16 35 H 0.04 0.91 5.67 -51.93 -0.29 0.61 16 36 H -0.02 -0.36 7.55 -51.93 -0.39 -0.75 16 37 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 38 H 0.06 0.84 8.00 -51.93 -0.42 0.42 16 39 H 0.08 0.96 6.56 -51.93 -0.34 0.62 16 40 H 0.14 2.20 8.06 -52.49 -0.42 1.78 16 41 H 0.15 2.13 8.06 -52.48 -0.42 1.71 16 42 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 43 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 364.54 15.07 5.49 5.49 Total: -1.00 -31.98 364.54 -8.31 -40.29 By element: Atomic # 1 Polarization: 10.71 SS G_CDS: -7.14 Total: 3.57 kcal Atomic # 6 Polarization: -5.86 SS G_CDS: -0.95 Total: -6.81 kcal Atomic # 7 Polarization: -44.61 SS G_CDS: -0.29 Total: -44.91 kcal Atomic # 8 Polarization: -13.46 SS G_CDS: -0.76 Total: -14.22 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -4.67 Total: 16.58 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -31.98 -8.31 -40.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232075413.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.474 kcal (2) G-P(sol) polarization free energy of solvation -31.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds