Wall clock time and date at job start Tue Mar 31 2020 07:26:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46947 * 2 1 4 4 C 1.53000 * 109.46947 * 180.02562 * 3 2 1 5 5 N 1.46904 * 109.47100 * 174.87172 * 4 3 2 6 6 C 1.46904 * 111.00007 * 199.74658 * 5 4 3 7 7 C 1.50694 * 109.47427 * 66.04312 * 6 5 4 8 8 H 1.08003 * 119.99722 * 359.97438 * 7 6 5 9 9 C 1.37878 * 119.99964 * 180.02562 * 7 6 5 10 10 N 1.31517 * 119.99758 * 179.97438 * 9 7 6 11 11 Si 1.86798 * 119.99950 * 359.97438 * 9 7 6 12 12 H 1.48508 * 109.47111 * 90.00045 * 11 9 7 13 13 H 1.48503 * 109.47112 * 209.99713 * 11 9 7 14 14 H 1.48495 * 109.47233 * 329.99870 * 11 9 7 15 15 C 1.46901 * 111.00260 * 75.78765 * 5 4 3 16 16 C 1.50703 * 109.46934 * 199.69025 * 15 5 4 17 17 C 1.35490 * 125.50196 * 264.63665 * 16 15 5 18 18 C 1.39795 * 107.83996 * 180.02562 * 17 16 15 19 19 C 1.37994 * 106.97047 * 359.75925 * 18 17 16 20 20 C 1.46492 * 126.26571 * 180.25216 * 19 18 17 21 21 O 1.21613 * 120.00037 * 0.15414 * 20 19 18 22 22 O 1.34895 * 119.99789 * 180.15239 * 20 19 18 23 23 C 1.45208 * 116.99814 * 179.97438 * 22 20 19 24 24 N 1.34950 * 125.50993 * 84.64229 * 16 15 5 25 25 H 0.96999 * 125.63760 * 359.97226 * 24 16 15 26 26 H 1.09008 * 109.46743 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46845 * 300.00044 * 1 2 3 28 28 H 1.08999 * 109.46801 * 60.00290 * 1 2 3 29 29 H 1.08998 * 109.47684 * 239.99608 * 2 1 3 30 30 H 1.08999 * 109.47324 * 119.99663 * 2 1 3 31 31 H 1.09000 * 109.47384 * 60.00286 * 3 2 1 32 32 H 1.08999 * 109.47133 * 299.99507 * 3 2 1 33 33 H 1.09002 * 109.47295 * 54.87050 * 4 3 2 34 34 H 1.08998 * 109.47573 * 294.86403 * 4 3 2 35 35 H 1.09001 * 109.46785 * 186.04772 * 6 5 4 36 36 H 1.08998 * 109.46500 * 306.03706 * 6 5 4 37 37 H 0.96997 * 119.99501 * 180.02562 * 10 9 7 38 38 H 1.08995 * 109.47158 * 79.68728 * 15 5 4 39 39 H 1.09001 * 109.46987 * 319.68785 * 15 5 4 40 40 H 1.08001 * 126.08191 * 0.04136 * 17 16 15 41 41 H 1.08003 * 126.51899 * 179.97438 * 18 17 16 42 42 H 1.09004 * 109.46716 * 60.00142 * 23 22 20 43 43 H 1.09002 * 109.46707 * 180.02562 * 23 22 20 44 44 H 1.09000 * 109.47055 * 300.00386 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0596 2.8220 -0.1244 6 6 5.4519 2.8465 -0.5924 7 6 5.5178 2.3149 -2.0010 8 1 4.6157 1.9908 -2.4986 9 6 6.7300 2.2412 -2.6539 10 7 6.7876 1.7768 -3.8830 11 14 8.2902 2.8011 -1.7929 12 1 8.8934 1.6548 -1.0666 13 1 9.2550 3.3122 -2.7995 14 1 7.9628 3.8814 -0.8281 15 6 3.9182 3.5469 1.1454 16 6 3.9593 5.0305 0.8842 17 6 5.0601 5.8152 0.9747 18 6 4.6812 7.1228 0.6572 19 6 3.3316 7.0929 0.3712 20 6 2.5030 8.2362 -0.0192 21 8 3.0002 9.3415 -0.1192 22 8 1.1885 8.0628 -0.2678 23 6 0.4289 9.2401 -0.6492 24 7 2.9056 5.7922 0.5225 25 1 1.9989 5.4752 0.3877 26 1 -0.3633 -1.0278 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5139 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 1.6767 1.9564 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 3.9330 0.8513 -0.8414 34 1 3.9338 1.0103 0.9315 35 1 5.8237 3.8709 -0.5729 36 1 6.0653 2.2249 0.0598 37 1 7.6403 1.7246 -4.3422 38 1 4.7349 3.2727 1.8132 39 1 2.9667 3.2857 1.6088 40 1 6.0537 5.4885 1.2441 41 1 5.3235 7.9908 0.6359 42 1 0.8469 9.6616 -1.5635 43 1 -0.6112 8.9620 -0.8192 44 1 0.4809 9.9804 0.1491 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001232075413.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:26:04 Heat of formation + Delta-G solvation = -70.186301 kcal Electronic energy + Delta-G solvation = -23750.312941 eV Core-core repulsion = 20281.376085 eV Total energy + Delta-G solvation = -3468.936857 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.47179 -40.97148 -38.74874 -37.51718 -35.60982 -34.55115 -32.17074 -31.84184 -30.49268 -29.40172 -28.14506 -26.24735 -24.31039 -23.65799 -21.99421 -21.73319 -21.37200 -21.05676 -19.58807 -18.93395 -18.00883 -17.47867 -16.92368 -16.51044 -16.28038 -15.89308 -15.40272 -15.12886 -14.91218 -14.77971 -14.53527 -14.29679 -14.10362 -14.01203 -13.75228 -13.66993 -13.56331 -13.18103 -13.06050 -12.69318 -12.60902 -12.30201 -12.06027 -11.87365 -11.86574 -11.84692 -11.79988 -11.52577 -11.31663 -11.22966 -10.74314 -9.99730 -9.26059 -8.99530 -8.24505 -6.26211 0.14654 1.36133 1.39929 1.49856 1.55195 1.62914 2.10129 2.20333 2.37879 3.10008 3.29291 3.87314 3.90690 4.07721 4.12944 4.25690 4.28230 4.30982 4.31808 4.37685 4.49554 4.55157 4.62336 4.67930 4.78004 4.85891 4.96573 4.98593 4.99040 5.08056 5.11403 5.16167 5.24494 5.26636 5.35213 5.51720 5.56001 5.61421 5.72333 5.88648 6.03076 6.37198 6.49599 6.63499 6.66615 6.80289 7.36999 8.92096 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.009396 B = 0.005219 C = 0.003800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2979.276590 B = 5363.994571 C = 7365.734542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.123 4.123 3 C -0.102 4.102 4 C 0.061 3.939 5 N -0.538 5.538 6 C 0.170 3.830 7 C -0.508 4.508 8 H 0.036 0.964 9 C 0.008 3.992 10 N -0.951 5.951 11 Si 0.939 3.061 12 H -0.266 1.266 13 H -0.288 1.288 14 H -0.243 1.243 15 C 0.108 3.892 16 C 0.097 3.903 17 C -0.222 4.222 18 C -0.100 4.100 19 C -0.071 4.071 20 C 0.543 3.457 21 O -0.533 6.533 22 O -0.366 6.366 23 C 0.031 3.969 24 N -0.502 5.502 25 H 0.431 0.569 26 H 0.060 0.940 27 H 0.064 0.936 28 H 0.048 0.952 29 H 0.045 0.955 30 H 0.069 0.931 31 H 0.076 0.924 32 H 0.050 0.950 33 H 0.052 0.948 34 H 0.040 0.960 35 H 0.035 0.965 36 H -0.011 1.011 37 H 0.264 0.736 38 H 0.069 0.931 39 H 0.108 0.892 40 H 0.149 0.851 41 H 0.154 0.846 42 H 0.060 0.940 43 H 0.135 0.865 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.114 6.171 14.022 20.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.161 4.161 3 C -0.140 4.140 4 C -0.066 4.066 5 N -0.262 5.262 6 C 0.043 3.957 7 C -0.547 4.547 8 H 0.055 0.945 9 C -0.189 4.189 10 N -0.592 5.592 11 Si 0.763 3.237 12 H -0.192 1.192 13 H -0.214 1.214 14 H -0.166 1.166 15 C -0.020 4.020 16 C -0.025 4.025 17 C -0.246 4.246 18 C -0.126 4.126 19 C -0.182 4.182 20 C 0.390 3.610 21 O -0.423 6.423 22 O -0.282 6.282 23 C -0.062 4.062 24 N -0.097 5.097 25 H 0.271 0.729 26 H 0.079 0.921 27 H 0.083 0.917 28 H 0.067 0.933 29 H 0.064 0.936 30 H 0.087 0.913 31 H 0.094 0.906 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.058 0.942 35 H 0.053 0.947 36 H 0.007 0.993 37 H 0.073 0.927 38 H 0.087 0.913 39 H 0.126 0.874 40 H 0.167 0.833 41 H 0.172 0.828 42 H 0.079 0.921 43 H 0.153 0.847 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -13.386 6.717 13.460 20.136 hybrid contribution 1.143 -0.214 -0.139 1.171 sum -12.242 6.503 13.321 19.225 Atomic orbital electron populations 1.21722 0.94592 1.01993 1.01971 1.21479 0.96782 0.96166 1.01702 1.21529 0.93423 0.97110 1.01957 1.22067 0.96017 0.88593 0.99950 1.61811 1.22129 1.15289 1.26984 1.19986 0.85869 0.96293 0.93523 1.21260 0.93754 1.40833 0.98825 0.94533 1.25798 1.02615 0.95145 0.95364 1.70056 1.26783 1.48721 1.13649 0.85829 0.78965 0.79954 0.78982 1.19160 1.21429 1.16612 1.20827 1.03879 0.85949 0.91394 1.20572 0.87239 0.93783 1.00886 1.20896 0.99025 0.92782 1.11895 1.21482 0.92056 0.98513 1.00564 1.19246 0.94351 0.83764 1.20846 1.19835 0.80958 0.86906 0.73288 1.90856 1.74206 1.26155 1.51129 1.86564 1.20924 1.41272 1.79473 1.23602 0.96226 0.85588 1.00783 1.41644 1.11536 1.05877 1.50631 0.72931 0.92114 0.91704 0.93318 0.93633 0.91265 0.90568 0.93144 0.92976 0.94218 0.94669 0.99305 0.92703 0.91260 0.87360 0.83344 0.82790 0.92075 0.84674 0.91343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.72 9.91 71.98 0.71 -2.01 16 2 C -0.12 -2.85 5.93 30.59 0.18 -2.67 16 3 C -0.10 -2.69 5.26 30.59 0.16 -2.53 16 4 C 0.06 2.06 4.79 86.30 0.41 2.47 16 5 N -0.54 -19.73 4.35 -905.36 -3.93 -23.66 16 6 C 0.17 7.71 3.61 85.55 0.31 8.02 16 7 C -0.51 -28.76 8.79 25.60 0.22 -28.53 16 8 H 0.04 2.32 7.56 -2.91 -0.02 2.30 16 9 C 0.01 0.44 5.47 84.65 0.46 0.90 16 10 N -0.95 -59.65 13.96 21.45 0.30 -59.36 16 11 Si 0.94 43.79 27.47 68.60 1.88 45.67 16 12 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 13 H -0.29 -13.46 7.11 99.48 0.71 -12.76 16 14 H -0.24 -10.42 6.54 99.48 0.65 -9.77 16 15 C 0.11 2.95 5.34 85.56 0.46 3.41 16 16 C 0.10 2.84 6.17 41.44 0.26 3.09 16 17 C -0.22 -6.80 9.68 22.01 0.21 -6.58 16 18 C -0.10 -3.05 10.66 22.59 0.24 -2.81 16 19 C -0.07 -2.14 7.10 40.32 0.29 -1.86 16 20 C 0.54 16.08 7.93 69.97 0.55 16.63 16 21 O -0.53 -18.00 16.68 19.46 0.32 -17.68 16 22 O -0.37 -8.84 10.58 -58.10 -0.61 -9.45 16 23 C 0.03 0.51 10.57 113.37 1.20 1.71 16 24 N -0.50 -13.56 6.07 -172.32 -1.05 -14.61 16 25 H 0.43 9.58 8.96 -92.71 -0.83 8.75 16 26 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16 27 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.08 1.60 6.90 -2.39 -0.02 1.58 16 32 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.05 2.19 6.58 -2.39 -0.02 2.18 16 34 H 0.04 1.18 8.00 -2.39 -0.02 1.16 16 35 H 0.04 1.63 5.67 -2.39 -0.01 1.61 16 36 H -0.01 -0.47 7.55 -2.39 -0.02 -0.49 16 37 H 0.26 15.56 8.31 -92.71 -0.77 14.78 16 38 H 0.07 1.79 8.00 -2.39 -0.02 1.77 16 39 H 0.11 2.28 6.56 -2.39 -0.02 2.26 16 40 H 0.15 4.29 8.06 -2.91 -0.02 4.26 16 41 H 0.15 4.36 8.06 -2.91 -0.02 4.33 16 42 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 43 H 0.14 1.28 8.14 -2.39 -0.02 1.26 16 44 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 Total: -1.00 -71.28 364.54 2.69 -68.59 By element: Atomic # 1 Polarization: 21.13 SS G_CDS: 0.10 Total: 21.24 kcal Atomic # 6 Polarization: -16.42 SS G_CDS: 5.67 Total: -10.75 kcal Atomic # 7 Polarization: -92.95 SS G_CDS: -4.68 Total: -97.63 kcal Atomic # 8 Polarization: -26.84 SS G_CDS: -0.29 Total: -27.13 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 1.88 Total: 45.67 kcal Total: -71.28 2.69 -68.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232075413.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.593 kcal (2) G-P(sol) polarization free energy of solvation -71.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds